Wall clock time and date at job start Sat Apr 11 2020 05:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 S 1.65602 * 120.00157 * 2 1 4 4 O 1.42102 * 104.27199 * 309.14112 * 3 2 1 5 5 O 1.42096 * 104.27684 * 181.28882 * 3 2 1 6 6 C 1.81395 * 104.45097 * 65.21396 * 3 2 1 7 7 H 1.09003 * 110.88821 * 298.76752 * 6 3 2 8 8 C 1.55162 * 111.00487 * 174.89117 * 6 3 2 9 9 C 1.54324 * 102.94126 * 206.38715 * 8 6 3 10 10 N 1.47026 * 107.27369 * 22.19040 * 9 8 6 11 11 S 1.65593 * 125.64746 * 181.02108 * 10 9 8 12 12 O 1.42097 * 104.28110 * 333.95590 * 11 10 9 13 13 O 1.42094 * 104.27570 * 206.09427 * 11 10 9 14 14 C 1.81403 * 104.44660 * 90.02454 * 11 10 9 15 15 C 1.53007 * 109.46951 * 179.97438 * 14 11 10 16 16 C 1.53007 * 109.46912 * 180.02562 * 15 14 11 17 17 C 1.50697 * 109.46901 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00299 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99726 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00191 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99787 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47104 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47228 * 119.99738 * 21 19 17 24 24 H 1.48502 * 109.47284 * 240.00052 * 21 19 17 25 25 C 1.47421 * 108.69975 * 1.28679 * 10 9 8 26 26 H 1.08998 * 109.47122 * 304.90298 * 1 2 3 27 27 H 1.09000 * 109.46629 * 64.89814 * 1 2 3 28 28 H 1.09000 * 109.47185 * 184.89927 * 1 2 3 29 29 H 0.96996 * 119.99535 * 179.97438 * 2 1 3 30 30 H 1.08995 * 110.72374 * 88.01922 * 8 6 3 31 31 H 1.09001 * 110.86675 * 324.82210 * 8 6 3 32 32 H 1.08997 * 109.88186 * 262.77377 * 9 8 6 33 33 H 1.08997 * 110.01113 * 141.68128 * 9 8 6 34 34 H 1.09003 * 109.47318 * 60.00223 * 14 11 10 35 35 H 1.08994 * 109.47643 * 299.99921 * 14 11 10 36 36 H 1.08994 * 109.47101 * 60.00436 * 15 14 11 37 37 H 1.08997 * 109.46951 * 300.00107 * 15 14 11 38 38 H 1.09004 * 109.46958 * 60.00265 * 16 15 14 39 39 H 1.08997 * 109.46899 * 300.00097 * 16 15 14 40 40 H 0.96999 * 119.99884 * 180.02562 * 20 19 17 41 41 H 1.09004 * 110.36899 * 94.48284 * 25 10 9 42 42 H 1.09000 * 110.36857 * 216.80720 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4341 0.0000 4 8 1.7154 2.1722 -1.0681 5 8 3.6606 1.0492 -0.0310 6 6 1.8817 2.1944 1.5947 7 1 0.8100 2.3771 1.6732 8 6 2.6863 3.5034 1.8109 9 6 2.7592 3.6143 3.3484 10 7 2.5541 2.2644 3.8938 11 16 2.5207 1.8677 5.5011 12 8 3.3052 2.8739 6.1268 13 8 2.9173 0.5036 5.5337 14 6 0.7770 2.0351 5.9725 15 6 0.6140 1.6904 7.4543 16 6 -0.8569 1.8310 7.8517 17 6 -1.0174 1.4921 9.3113 18 1 -0.1566 1.2047 9.8968 19 6 -2.2634 1.5479 9.8989 20 7 -3.3117 1.8973 9.1859 21 14 -2.4625 1.1271 11.7080 22 1 -1.1405 0.7675 12.2810 23 1 -3.0134 2.3011 12.4316 24 1 -3.3919 -0.0224 11.8495 25 6 2.3895 1.3216 2.7725 26 1 -0.3633 0.5880 0.8428 27 1 -0.3632 0.4360 -0.9306 28 1 -0.3633 -1.0239 0.0878 29 1 1.9499 -0.8401 0.0004 30 1 2.1561 4.3563 1.3874 31 1 3.6851 3.4204 1.3824 32 1 1.9774 4.2826 3.7093 33 1 3.7367 3.9911 3.6493 34 1 0.1717 1.3553 5.3730 35 1 0.4507 3.0606 5.7997 36 1 1.2193 2.3699 8.0541 37 1 0.9401 0.6648 7.6267 38 1 -1.4619 1.1512 7.2518 39 1 -1.1834 2.8565 7.6792 40 1 -4.1882 1.9369 9.5994 41 1 3.3446 0.8602 2.5214 42 1 1.6528 0.5584 3.0235 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611003264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:45 Heat of formation + Delta-G solvation = -179.878450 kcal Electronic energy + Delta-G solvation = -26020.433125 eV Core-core repulsion = 22060.368290 eV Total energy + Delta-G solvation = -3960.064835 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.55380 -38.28941 -38.23675 -37.12427 -37.11519 -36.48068 -35.85489 -34.17497 -32.34655 -30.27574 -29.66746 -26.77486 -25.67448 -24.15504 -22.96119 -22.29127 -20.31172 -20.06111 -19.02963 -18.85420 -18.57875 -17.94865 -17.41491 -17.21457 -17.09513 -16.48898 -16.15625 -15.77852 -15.74333 -14.90959 -14.75069 -14.58942 -14.50444 -14.43927 -14.05847 -13.76500 -13.57474 -13.46098 -13.30056 -13.28079 -13.22035 -13.16808 -13.01212 -12.79359 -12.78217 -12.65702 -12.61408 -12.47675 -12.17643 -12.10014 -11.76823 -11.68020 -11.38331 -11.12838 -10.58450 -10.42450 -10.06086 -8.23683 -6.34152 -0.93343 -0.77919 1.39044 1.40497 1.53008 1.57117 1.73468 2.39218 2.66711 2.73750 2.80789 3.02698 3.10281 3.28266 3.45423 3.73005 3.83635 3.90235 4.15327 4.20262 4.25055 4.35668 4.38111 4.60055 4.64354 4.65188 4.71820 4.78205 4.90566 4.93581 4.94880 5.02211 5.08299 5.09071 5.25924 5.45067 5.62488 5.78919 6.11612 6.19236 6.81562 7.35349 8.87788 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017973 B = 0.002623 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.476401 B =10670.626665 C =11475.634341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -1.118 6.118 3 S 2.638 3.362 4 O -0.981 6.981 5 O -0.985 6.985 6 C -0.602 4.602 7 H 0.183 0.817 8 C -0.111 4.111 9 C 0.112 3.888 10 N -1.011 6.011 11 S 2.637 3.363 12 O -0.983 6.983 13 O -0.982 6.982 14 C -0.604 4.604 15 C -0.108 4.108 16 C 0.032 3.968 17 C -0.552 4.552 18 H 0.059 0.941 19 C 0.005 3.995 20 N -0.928 5.928 21 Si 0.960 3.040 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.277 1.277 25 C 0.131 3.869 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.427 0.573 30 H 0.130 0.870 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.006 0.994 39 H 0.004 0.996 40 H 0.265 0.735 41 H 0.084 0.916 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.042 0.052 -21.280 22.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.880 5.880 3 S 2.729 3.271 4 O -0.971 6.971 5 O -0.976 6.976 6 C -0.714 4.714 7 H 0.201 0.799 8 C -0.151 4.151 9 C -0.013 4.013 10 N -0.850 5.850 11 S 2.735 3.265 12 O -0.974 6.974 13 O -0.972 6.972 14 C -0.736 4.736 15 C -0.147 4.147 16 C -0.006 4.006 17 C -0.590 4.590 18 H 0.077 0.923 19 C -0.194 4.194 20 N -0.568 5.568 21 Si 0.785 3.215 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.202 1.202 25 C 0.005 3.995 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.262 0.738 30 H 0.148 0.852 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.168 0.832 35 H 0.165 0.835 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.024 0.976 39 H 0.022 0.978 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.073 0.278 -21.399 23.245 hybrid contribution -1.164 -0.392 1.438 1.892 sum 7.909 -0.115 -19.961 21.471 Atomic orbital electron populations 1.21800 0.77277 1.06075 1.02650 1.55148 1.16910 1.24017 1.91927 1.04085 0.72846 0.73928 0.76195 1.93583 1.79133 1.73481 1.50894 1.93578 1.34811 1.81654 1.87529 1.31927 1.13243 1.07985 1.18232 0.79910 1.22634 1.00771 0.95637 0.96072 1.21957 1.03354 0.82384 0.93584 1.58495 1.88421 1.16523 1.21530 1.04150 0.77780 0.72871 0.71722 1.93531 1.67693 1.61046 1.75099 1.93535 1.81836 1.36270 1.85604 1.30523 1.24000 1.13081 1.05966 1.21334 1.00740 1.01507 0.91144 1.18955 0.90593 0.96002 0.95051 1.21767 0.94063 1.46277 0.96890 0.92312 1.25889 0.95694 0.94950 1.02850 1.70058 0.99737 1.49010 1.38016 0.85467 0.78462 0.78036 0.79530 1.18901 1.20290 1.20211 1.21964 1.02629 0.91256 0.83657 0.90120 0.92011 0.87988 0.73764 0.85224 0.89096 0.88794 0.90388 0.83173 0.83466 0.91715 0.91505 0.97576 0.97788 0.92621 0.89741 0.86897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 11.02 127.77 1.41 1.82 16 2 N -1.12 -10.38 6.07 -206.53 -1.25 -11.64 16 3 S 2.64 37.21 5.00 -56.49 -0.28 36.93 16 4 O -0.98 -19.82 17.81 -127.65 -2.27 -22.10 16 5 O -0.99 -20.76 17.61 -127.65 -2.25 -23.01 16 6 C -0.60 -6.11 3.57 32.06 0.11 -5.99 16 7 H 0.18 0.72 7.76 -2.39 -0.02 0.70 16 8 C -0.11 -1.14 6.43 31.78 0.20 -0.93 16 9 C 0.11 1.65 6.89 86.73 0.60 2.25 16 10 N -1.01 -19.43 3.62 -506.01 -1.83 -21.26 16 11 S 2.64 71.47 5.65 -56.49 -0.32 71.15 16 12 O -0.98 -32.69 17.60 -127.65 -2.25 -34.94 16 13 O -0.98 -32.06 17.60 -127.65 -2.25 -34.30 16 14 C -0.60 -16.40 6.18 71.98 0.44 -15.95 16 15 C -0.11 -4.16 5.16 30.60 0.16 -4.00 16 16 C 0.03 1.60 4.97 29.85 0.15 1.74 16 17 C -0.55 -30.60 9.11 25.60 0.23 -30.36 16 18 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 19 C 0.00 0.25 5.46 84.66 0.46 0.72 16 20 N -0.93 -54.17 13.29 21.45 0.28 -53.89 16 21 Si 0.96 43.27 29.54 68.60 2.03 45.29 16 22 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 24 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 25 C 0.13 1.95 6.36 86.93 0.55 2.50 16 26 H 0.08 0.20 7.63 -2.39 -0.02 0.18 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.43 2.95 8.92 -96.75 -0.86 2.09 16 30 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 0.90 8.04 -2.39 -0.02 0.88 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.15 3.36 8.14 -2.39 -0.02 3.34 16 35 H 0.15 3.43 8.14 -2.39 -0.02 3.41 16 36 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 40 H 0.26 14.48 8.31 -92.71 -0.77 13.70 16 41 H 0.08 1.33 7.63 -2.38 -0.02 1.31 16 42 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -84.84 373.97 -5.91 -90.75 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 0.16 Total: 5.22 kcal Atomic # 6 Polarization: -52.54 SS G_CDS: 4.32 Total: -48.22 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -2.80 Total: -86.78 kcal Atomic # 8 Polarization: -105.33 SS G_CDS: -9.01 Total: -114.35 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 108.68 SS G_CDS: -0.60 Total: 108.08 kcal Total: -84.84 -5.91 -90.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611003264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.126 kcal (2) G-P(sol) polarization free energy of solvation -84.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds