Wall clock time and date at job start Sat Apr 11 2020 05:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34782 * 119.99897 * 2 1 4 4 O 1.21288 * 119.99641 * 179.97438 * 3 2 1 5 5 C 1.50695 * 120.00249 * 359.97438 * 3 2 1 6 6 S 1.80996 * 109.47306 * 180.02562 * 5 3 2 7 7 C 1.76199 * 100.00197 * 180.02562 * 6 5 3 8 8 H 1.07998 * 119.99776 * 359.97438 * 7 6 5 9 9 C 1.38798 * 120.00056 * 179.97438 * 7 6 5 10 10 N 1.31630 * 120.00086 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00070 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46709 * 89.99916 * 11 9 7 13 13 H 1.48493 * 109.47025 * 210.00181 * 11 9 7 14 14 H 1.48502 * 109.46678 * 330.00491 * 11 9 7 15 15 C 1.46503 * 120.00025 * 179.97438 * 2 1 3 16 16 H 1.09001 * 110.43470 * 177.46042 * 15 2 1 17 17 C 1.54630 * 110.48581 * 300.00506 * 15 2 1 18 18 C 1.54476 * 101.76544 * 143.47469 * 17 15 2 19 19 N 1.46762 * 105.47211 * 334.58468 * 18 17 15 20 20 C 1.46506 * 124.34760 * 197.01958 * 19 18 17 21 21 C 1.52997 * 109.47289 * 89.99827 * 20 19 18 22 22 F 1.39897 * 109.47422 * 59.99979 * 21 20 19 23 23 F 1.39895 * 109.47162 * 180.02562 * 21 20 19 24 24 F 1.39900 * 109.47010 * 299.99671 * 21 20 19 25 25 C 1.34420 * 111.30189 * 17.28212 * 19 18 17 26 26 O 1.21284 * 124.94130 * 179.31550 * 25 19 18 27 27 H 1.09001 * 109.47573 * 270.00303 * 1 2 3 28 28 H 1.09005 * 109.46814 * 30.00318 * 1 2 3 29 29 H 1.09005 * 109.47052 * 150.00244 * 1 2 3 30 30 H 1.08998 * 109.47120 * 300.00403 * 5 3 2 31 31 H 1.09001 * 109.47118 * 60.00006 * 5 3 2 32 32 H 0.97000 * 120.00107 * 179.97438 * 10 9 7 33 33 H 1.09004 * 110.97141 * 25.35429 * 17 15 2 34 34 H 1.09007 * 110.96884 * 261.59496 * 17 15 2 35 35 H 1.09003 * 110.24587 * 215.58140 * 18 17 15 36 36 H 1.08997 * 110.32096 * 93.61913 * 18 17 15 37 37 H 1.09001 * 109.47060 * 210.00096 * 20 19 18 38 38 H 1.09004 * 109.47073 * 329.99584 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 16 2.5616 3.8481 -0.0012 7 6 1.4415 5.2082 -0.0010 8 1 0.3763 5.0305 -0.0011 9 6 1.9283 6.5081 -0.0009 10 7 3.2266 6.7247 -0.0013 11 14 0.7408 7.9501 -0.0014 12 1 0.4256 8.3322 1.3986 13 1 1.3625 9.1029 -0.7012 14 1 -0.5095 7.5613 -0.7019 15 6 2.1975 -1.2687 0.0006 16 1 3.2715 -1.0881 -0.0448 17 6 1.8408 -2.0990 1.2553 18 6 1.8465 -3.5378 0.6931 19 7 1.5601 -3.3994 -0.7397 20 6 1.1191 -4.4968 -1.6043 21 6 -0.4093 -4.5667 -1.6003 22 9 -0.9325 -3.3594 -2.0756 23 9 -0.8303 -5.6150 -2.4255 24 9 -0.8625 -4.7899 -0.2957 25 6 1.7600 -2.1377 -1.1579 26 8 1.6087 -1.7515 -2.2977 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8901 -0.5138 30 1 0.7591 2.5299 -0.8908 31 1 0.7584 2.5303 0.8892 32 1 3.5668 7.6331 -0.0016 33 1 0.8537 -1.8315 1.6325 34 1 2.5982 -1.9800 2.0302 35 1 1.0730 -4.1348 1.1764 36 1 2.8238 -3.9976 0.8396 37 1 1.4723 -4.3230 -2.6208 38 1 1.5268 -5.4375 -1.2340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732779004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:54 Heat of formation + Delta-G solvation = -207.372450 kcal Electronic energy + Delta-G solvation = -27852.768799 eV Core-core repulsion = 23214.211043 eV Total energy + Delta-G solvation = -4638.557756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.47677 -48.02984 -47.92931 -41.20215 -39.08473 -36.86508 -35.55181 -33.10856 -32.42390 -29.80862 -28.71132 -27.66004 -26.29369 -25.45277 -24.04658 -22.36868 -20.59626 -19.32827 -18.91384 -18.87569 -18.20223 -17.78856 -17.21075 -16.79180 -16.41557 -15.72045 -15.44903 -15.00702 -14.87340 -14.79835 -14.67419 -14.41955 -14.22124 -14.10543 -14.09987 -14.03379 -13.79047 -13.27808 -13.14497 -13.07981 -12.86810 -12.66178 -12.55761 -12.35280 -12.21291 -11.99262 -11.47037 -11.05845 -11.01918 -10.75810 -10.37454 -9.81007 -9.53634 -9.43597 -9.06041 -8.65432 -8.23650 -6.50149 -6.21207 -3.91910 1.79520 2.16790 2.41397 2.90135 2.93492 3.23069 3.25736 3.30968 3.34999 3.49832 3.55224 3.81387 3.95231 4.11863 4.20506 4.40436 4.47054 4.56723 4.66683 4.83995 4.98437 5.06302 5.14103 5.20503 5.36308 5.49134 5.52085 5.66797 5.68507 5.75134 5.88787 6.12883 6.33020 6.45759 7.34559 7.60354 7.67534 8.35793 8.42733 9.24202 10.86260 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.024844 B = 0.002468 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.761071 B =11344.078556 C =11824.096462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.606 5.606 3 C 0.541 3.459 4 O -0.512 6.512 5 C -0.149 4.149 6 S -0.060 6.060 7 C -0.534 4.534 8 H 0.073 0.927 9 C 0.074 3.926 10 N -0.868 5.868 11 Si 0.919 3.081 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.117 3.883 16 H 0.141 0.859 17 C -0.142 4.142 18 C 0.102 3.898 19 N -0.625 5.625 20 C 0.089 3.911 21 C 0.432 3.568 22 F -0.174 7.174 23 F -0.181 7.181 24 F -0.183 7.183 25 C 0.511 3.489 26 O -0.492 6.492 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.268 0.732 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.705 -27.811 2.156 28.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.342 5.342 3 C 0.329 3.671 4 O -0.385 6.385 5 C -0.299 4.299 6 S 0.167 5.833 7 C -0.683 4.683 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.503 5.503 11 Si 0.745 3.255 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.008 3.992 16 H 0.158 0.842 17 C -0.180 4.180 18 C -0.020 4.020 19 N -0.361 5.361 20 C -0.037 4.037 21 C 0.376 3.624 22 F -0.155 7.155 23 F -0.163 7.163 24 F -0.165 7.165 25 C 0.297 3.703 26 O -0.363 6.363 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.146 0.854 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.885 -27.454 1.475 27.924 hybrid contribution -2.612 0.693 -0.038 2.703 sum -7.497 -26.761 1.438 27.828 Atomic orbital electron populations 1.21788 0.79074 1.03623 1.01802 1.47595 1.06840 1.04013 1.75756 1.20430 0.87939 0.84352 0.74363 1.90690 1.13697 1.86515 1.47617 1.23551 1.04632 0.96718 1.05011 1.85387 1.07953 0.93278 1.96720 1.22853 0.94314 0.92150 1.58956 0.90888 1.24991 0.95681 0.98376 0.94520 1.70016 1.11745 1.21673 1.46867 0.86163 0.80291 0.80697 0.78327 1.20274 1.20756 1.19665 1.21550 1.00981 0.84006 0.92613 0.84159 1.23037 1.04925 0.92411 0.97675 1.22286 1.02503 0.98543 0.78704 1.48072 1.68140 1.08931 1.10945 1.22465 0.87318 0.93711 1.00184 1.21333 0.93465 0.73957 0.73666 1.93254 1.88777 1.45342 1.88158 1.93200 1.91909 1.58413 1.72756 1.93179 1.91242 1.94472 1.37561 1.21418 0.76209 0.82447 0.90199 1.90788 1.49190 1.75887 1.20444 0.92164 0.89972 0.91806 0.88945 0.88984 0.92179 0.88996 0.87845 0.89407 0.89821 0.85391 0.85512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 9.19 59.85 0.55 1.47 16 2 N -0.61 -8.69 2.85 -173.94 -0.50 -9.18 16 3 C 0.54 10.27 7.69 -10.99 -0.08 10.18 16 4 O -0.51 -11.44 15.23 5.55 0.08 -11.35 16 5 C -0.15 -3.04 4.71 36.00 0.17 -2.87 16 6 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 7 C -0.53 -15.23 9.50 30.94 0.29 -14.94 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 10 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 11 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 C 0.12 1.37 3.33 -67.94 -0.23 1.15 16 16 H 0.14 1.84 6.98 -51.93 -0.36 1.48 16 17 C -0.14 -0.99 6.77 -25.10 -0.17 -1.16 16 18 C 0.10 0.51 7.26 -3.12 -0.02 0.49 16 19 N -0.62 -4.91 2.80 -172.41 -0.48 -5.39 16 20 C 0.09 0.53 5.91 -4.04 -0.02 0.50 16 21 C 0.43 3.43 3.29 37.16 0.12 3.56 16 22 F -0.17 -1.94 16.97 2.25 0.04 -1.91 16 23 F -0.18 -1.45 17.32 2.25 0.04 -1.42 16 24 F -0.18 -1.44 16.54 2.25 0.04 -1.40 16 25 C 0.51 6.18 6.16 -10.86 -0.07 6.11 16 26 O -0.49 -8.01 17.58 5.55 0.10 -7.92 16 27 H 0.06 0.56 7.94 -51.93 -0.41 0.14 16 28 H 0.08 0.99 6.44 -51.93 -0.33 0.65 16 29 H 0.06 0.71 7.12 -51.93 -0.37 0.34 16 30 H 0.09 1.80 7.40 -51.92 -0.38 1.42 16 31 H 0.09 1.70 8.11 -51.92 -0.42 1.28 16 32 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.09 0.62 7.10 -51.93 -0.37 0.26 16 34 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.09 0.32 7.52 -51.93 -0.39 -0.07 16 36 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.13 0.79 7.92 -51.93 -0.41 0.38 16 38 H 0.13 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 350.34 15.07 5.28 5.28 Total: -1.00 -37.23 350.34 -5.73 -42.95 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -4.27 Total: -3.29 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 0.45 Total: 6.50 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: -0.25 Total: -40.03 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.18 Total: -19.27 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.11 Total: -4.72 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -37.23 -5.73 -42.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732779004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.419 kcal (2) G-P(sol) polarization free energy of solvation -37.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds