Wall clock time and date at job start Sat Apr 11 2020 05:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34782 * 119.99897 * 2 1 4 4 O 1.21288 * 119.99641 * 179.97438 * 3 2 1 5 5 C 1.50695 * 120.00249 * 359.97438 * 3 2 1 6 6 S 1.80996 * 109.47306 * 180.02562 * 5 3 2 7 7 C 1.76199 * 100.00197 * 180.02562 * 6 5 3 8 8 H 1.07998 * 119.99776 * 359.97438 * 7 6 5 9 9 C 1.38798 * 120.00056 * 179.97438 * 7 6 5 10 10 N 1.31630 * 120.00086 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00070 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46709 * 89.99916 * 11 9 7 13 13 H 1.48493 * 109.47025 * 210.00181 * 11 9 7 14 14 H 1.48502 * 109.46678 * 330.00491 * 11 9 7 15 15 C 1.46503 * 120.00025 * 179.97438 * 2 1 3 16 16 H 1.09001 * 110.43470 * 177.46042 * 15 2 1 17 17 C 1.54630 * 110.48581 * 300.00506 * 15 2 1 18 18 C 1.54476 * 101.76544 * 143.47469 * 17 15 2 19 19 N 1.46762 * 105.47211 * 334.58468 * 18 17 15 20 20 C 1.46506 * 124.34760 * 197.01958 * 19 18 17 21 21 C 1.52997 * 109.47289 * 89.99827 * 20 19 18 22 22 F 1.39897 * 109.47422 * 59.99979 * 21 20 19 23 23 F 1.39895 * 109.47162 * 180.02562 * 21 20 19 24 24 F 1.39900 * 109.47010 * 299.99671 * 21 20 19 25 25 C 1.34420 * 111.30189 * 17.28212 * 19 18 17 26 26 O 1.21284 * 124.94130 * 179.31550 * 25 19 18 27 27 H 1.09001 * 109.47573 * 270.00303 * 1 2 3 28 28 H 1.09005 * 109.46814 * 30.00318 * 1 2 3 29 29 H 1.09005 * 109.47052 * 150.00244 * 1 2 3 30 30 H 1.08998 * 109.47120 * 300.00403 * 5 3 2 31 31 H 1.09001 * 109.47118 * 60.00006 * 5 3 2 32 32 H 0.97000 * 120.00107 * 179.97438 * 10 9 7 33 33 H 1.09004 * 110.97141 * 25.35429 * 17 15 2 34 34 H 1.09007 * 110.96884 * 261.59496 * 17 15 2 35 35 H 1.09003 * 110.24587 * 215.58140 * 18 17 15 36 36 H 1.08997 * 110.32096 * 93.61913 * 18 17 15 37 37 H 1.09001 * 109.47060 * 210.00096 * 20 19 18 38 38 H 1.09004 * 109.47073 * 329.99584 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 16 2.5616 3.8481 -0.0012 7 6 1.4415 5.2082 -0.0010 8 1 0.3763 5.0305 -0.0011 9 6 1.9283 6.5081 -0.0009 10 7 3.2266 6.7247 -0.0013 11 14 0.7408 7.9501 -0.0014 12 1 0.4256 8.3322 1.3986 13 1 1.3625 9.1029 -0.7012 14 1 -0.5095 7.5613 -0.7019 15 6 2.1975 -1.2687 0.0006 16 1 3.2715 -1.0881 -0.0448 17 6 1.8408 -2.0990 1.2553 18 6 1.8465 -3.5378 0.6931 19 7 1.5601 -3.3994 -0.7397 20 6 1.1191 -4.4968 -1.6043 21 6 -0.4093 -4.5667 -1.6003 22 9 -0.9325 -3.3594 -2.0756 23 9 -0.8303 -5.6150 -2.4255 24 9 -0.8625 -4.7899 -0.2957 25 6 1.7600 -2.1377 -1.1579 26 8 1.6087 -1.7515 -2.2977 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8901 -0.5138 30 1 0.7591 2.5299 -0.8908 31 1 0.7584 2.5303 0.8892 32 1 3.5668 7.6331 -0.0016 33 1 0.8537 -1.8315 1.6325 34 1 2.5982 -1.9800 2.0302 35 1 1.0730 -4.1348 1.1764 36 1 2.8238 -3.9976 0.8396 37 1 1.4723 -4.3230 -2.6208 38 1 1.5268 -5.4375 -1.2340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732779004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:53 Heat of formation + Delta-G solvation = -233.593724 kcal Electronic energy + Delta-G solvation = -27853.905839 eV Core-core repulsion = 23214.211043 eV Total energy + Delta-G solvation = -4639.694796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.12375 -48.65773 -48.62233 -42.10782 -40.39861 -37.76632 -36.71198 -34.58822 -33.90861 -31.09925 -29.45162 -28.64432 -27.72214 -27.21607 -24.66516 -23.12609 -21.55772 -20.46309 -19.68795 -19.55320 -19.54214 -18.86499 -18.47110 -17.75219 -17.34297 -16.88533 -16.81268 -16.59646 -16.11968 -15.64565 -15.52999 -15.37105 -15.07856 -14.98462 -14.90627 -14.77333 -14.75897 -14.57615 -14.40090 -14.12729 -13.72054 -13.60348 -13.46765 -13.39426 -13.30439 -13.16184 -12.89172 -12.85868 -12.58841 -12.17027 -11.73882 -11.36145 -11.14233 -11.02140 -10.29080 -10.13004 -9.78810 -8.68004 -8.34945 -6.13320 0.89755 1.27848 1.38646 1.42724 1.45971 1.55319 1.57795 1.80244 2.09701 2.26789 2.77514 2.94068 2.99275 3.12768 3.20837 3.25650 3.44850 3.69268 3.79460 3.96659 4.01219 4.09919 4.22535 4.22871 4.43810 4.48032 4.54316 4.63073 4.75430 4.97079 5.03138 5.16681 5.30983 5.41716 5.68177 6.06012 6.19811 6.80551 7.00305 7.06355 8.74387 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.024844 B = 0.002468 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.761071 B =11344.078556 C =11824.096462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.595 5.595 3 C 0.539 3.461 4 O -0.557 6.557 5 C -0.124 4.124 6 S -0.148 6.148 7 C -0.546 4.546 8 H 0.082 0.918 9 C 0.014 3.986 10 N -0.911 5.911 11 Si 0.999 3.001 12 H -0.265 1.265 13 H -0.278 1.278 14 H -0.260 1.260 15 C 0.104 3.896 16 H 0.121 0.879 17 C -0.131 4.131 18 C 0.103 3.897 19 N -0.614 5.614 20 C 0.089 3.911 21 C 0.430 3.570 22 F -0.197 7.197 23 F -0.182 7.182 24 F -0.180 7.180 25 C 0.509 3.491 26 O -0.546 6.546 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.271 0.729 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.684 -29.865 3.557 31.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.329 5.329 3 C 0.327 3.673 4 O -0.434 6.434 5 C -0.275 4.275 6 S 0.080 5.920 7 C -0.694 4.694 8 H 0.101 0.899 9 C -0.191 4.191 10 N -0.547 5.547 11 Si 0.821 3.179 12 H -0.190 1.190 13 H -0.203 1.203 14 H -0.184 1.184 15 C -0.004 4.004 16 H 0.138 0.862 17 C -0.169 4.169 18 C -0.018 4.018 19 N -0.348 5.348 20 C -0.036 4.036 21 C 0.375 3.625 22 F -0.179 7.179 23 F -0.164 7.164 24 F -0.162 7.162 25 C 0.295 3.705 26 O -0.422 6.422 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.133 0.867 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.141 0.859 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.907 -29.600 2.915 30.535 hybrid contribution -2.043 1.126 -0.468 2.380 sum -8.951 -28.475 2.447 29.948 Atomic orbital electron populations 1.22009 0.77109 1.03678 1.03877 1.47523 1.08038 1.03671 1.73699 1.20148 0.87316 0.85210 0.74622 1.90671 1.15358 1.87199 1.50197 1.23369 1.02852 0.94761 1.06494 1.85539 1.12396 0.97077 1.97030 1.23187 0.94622 0.92617 1.58940 0.89939 1.26127 0.97614 1.01660 0.93698 1.70180 1.14090 1.22509 1.47969 0.84948 0.77822 0.76283 0.78889 1.19048 1.20343 1.18352 1.21840 0.99761 0.83328 0.95473 0.86159 1.23075 1.05775 0.92451 0.95632 1.22594 1.05131 0.97495 0.76557 1.48090 1.66349 1.07928 1.12395 1.22755 0.85879 0.94783 1.00167 1.21604 0.94277 0.73084 0.73563 1.93214 1.89257 1.46903 1.88519 1.93198 1.92023 1.58278 1.72854 1.93181 1.91359 1.94369 1.37246 1.21417 0.75867 0.83899 0.89286 1.90761 1.51876 1.77178 1.22353 0.88908 0.90592 0.91180 0.88031 0.86656 0.91955 0.88182 0.86286 0.86791 0.86893 0.85886 0.80778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.60 9.19 127.77 1.17 2.77 16 2 N -0.60 -16.72 2.85 -822.60 -2.35 -19.07 16 3 C 0.54 20.82 7.69 87.65 0.67 21.50 16 4 O -0.56 -25.98 15.23 -3.05 -0.05 -26.03 16 5 C -0.12 -5.10 4.71 71.23 0.34 -4.76 16 6 S -0.15 -8.32 20.57 -56.49 -1.16 -9.48 16 7 C -0.55 -31.48 9.50 67.95 0.65 -30.83 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 9 C 0.01 0.79 5.49 84.86 0.47 1.26 16 10 N -0.91 -56.31 13.22 21.65 0.29 -56.02 16 11 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 12 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 13 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 14 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 15 C 0.10 2.35 3.33 44.98 0.15 2.50 16 16 H 0.12 3.24 6.98 -2.39 -0.02 3.22 16 17 C -0.13 -1.43 6.77 31.65 0.21 -1.22 16 18 C 0.10 0.59 7.26 86.83 0.63 1.22 16 19 N -0.61 -8.01 2.80 -817.97 -2.29 -10.31 16 20 C 0.09 0.80 5.91 86.38 0.51 1.31 16 21 C 0.43 5.90 3.29 71.98 0.24 6.14 16 22 F -0.20 -4.24 16.97 44.97 0.76 -3.48 16 23 F -0.18 -2.58 17.32 44.97 0.78 -1.80 16 24 F -0.18 -2.27 16.54 44.97 0.74 -1.52 16 25 C 0.51 11.90 6.16 87.90 0.54 12.44 16 26 O -0.55 -18.17 17.58 -3.04 -0.05 -18.22 16 27 H 0.09 1.41 7.94 -2.39 -0.02 1.39 16 28 H 0.08 1.73 6.44 -2.38 -0.02 1.71 16 29 H 0.07 1.44 7.12 -2.38 -0.02 1.42 16 30 H 0.10 3.97 7.40 -2.40 -0.02 3.95 16 31 H 0.12 4.16 8.11 -2.39 -0.02 4.14 16 32 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.10 0.97 7.10 -2.38 -0.02 0.96 16 34 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.11 0.20 7.52 -2.39 -0.02 0.18 16 36 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.12 1.34 7.92 -2.39 -0.02 1.32 16 38 H 0.17 -0.06 8.14 -2.38 -0.02 -0.08 16 Total: -1.00 -86.27 350.34 5.39 -80.89 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 1.11 Total: 6.75 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 5.58 Total: 12.34 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -4.35 Total: -85.40 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -0.10 Total: -44.25 kcal Atomic # 9 Polarization: -9.09 SS G_CDS: 2.29 Total: -6.80 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.48 kcal Total: -86.27 5.39 -80.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732779004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.705 kcal (2) G-P(sol) polarization free energy of solvation -86.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds