Wall clock time and date at job start Sat Apr 11 2020 05:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47222 * 2 1 4 4 C 1.46498 * 120.00074 * 270.00278 * 3 2 1 5 5 C 1.50705 * 109.47053 * 270.00026 * 4 3 2 6 6 H 1.07996 * 120.00003 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99693 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00415 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99765 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47185 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.46869 * 119.99913 * 9 7 5 12 12 H 1.48500 * 109.47173 * 240.00165 * 9 7 5 13 13 C 1.34774 * 119.99885 * 90.00358 * 3 2 1 14 14 O 1.21278 * 120.00437 * 179.97438 * 13 3 2 15 15 C 1.50702 * 119.99925 * 0.02562 * 13 3 2 16 16 O 1.45209 * 109.46995 * 179.97438 * 15 13 3 17 17 C 1.34826 * 116.99677 * 179.97438 * 16 15 13 18 18 O 1.21550 * 120.00231 * 0.02562 * 17 16 15 19 19 C 1.47012 * 119.99777 * 180.02562 * 17 16 15 20 20 C 1.36690 * 125.16167 * 180.02562 * 19 17 16 21 21 C 1.36775 * 114.72917 * 179.97438 * 20 19 17 22 22 C 1.36624 * 114.75499 * 359.97438 * 21 20 19 23 23 C 1.47199 * 125.15972 * 179.97438 * 22 21 20 24 24 N 1.34771 * 120.00416 * 179.97438 * 23 22 21 25 25 O 1.21624 * 119.99956 * 0.02562 * 23 22 21 26 26 S 1.75833 * 125.16526 * 359.96354 * 19 17 16 27 27 H 1.09000 * 109.47299 * 59.99333 * 1 2 3 28 28 H 1.08993 * 109.47151 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46903 * 299.99676 * 1 2 3 30 30 H 1.09003 * 109.46903 * 240.00324 * 2 1 3 31 31 H 1.09000 * 109.47299 * 120.00667 * 2 1 3 32 32 H 1.08997 * 109.47258 * 30.00140 * 4 3 2 33 33 H 1.09007 * 109.46968 * 150.00249 * 4 3 2 34 34 H 0.96998 * 120.00481 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.47244 * 60.00385 * 15 13 3 36 36 H 1.09000 * 109.47076 * 299.99870 * 15 13 3 37 37 H 1.07995 * 122.63806 * 0.23006 * 20 19 17 38 38 H 1.07997 * 122.61827 * 180.02562 * 21 20 19 39 39 H 0.96998 * 119.99897 * 0.02562 * 24 23 22 40 40 H 0.97003 * 120.00154 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0959 7 6 4.1493 2.3905 -2.8775 8 7 3.3496 3.1275 -3.6171 9 14 5.9137 2.0975 -3.4165 10 1 6.6010 1.2413 -2.4167 11 1 5.9216 1.4191 -4.7373 12 1 6.6210 3.3988 -3.5241 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1597 1.1673 15 6 1.9925 1.3058 2.4723 16 8 2.3075 2.1952 3.5760 17 6 2.1358 1.7093 4.8218 18 8 1.7342 0.5731 4.9811 19 6 2.4343 2.5536 5.9877 20 6 2.2993 2.1699 7.2927 21 6 2.6383 3.1274 8.2086 22 6 3.0572 4.3112 7.6703 23 6 3.4749 5.4928 8.4424 24 7 3.8710 6.6107 7.8022 25 8 3.4634 5.4600 9.6581 26 16 3.0207 4.2096 5.9153 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5816 1.6878 -2.0283 33 1 2.0955 3.1411 -1.1383 34 1 3.6756 3.5180 -4.4430 35 1 2.6230 0.4186 2.5298 36 1 0.9446 1.0113 2.5303 37 1 1.9560 1.1865 7.5782 38 1 2.5802 2.9605 9.2740 39 1 3.8805 6.6367 6.8326 40 1 4.1466 7.3892 8.3111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748960592.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:04 Heat of formation + Delta-G solvation = -118.760957 kcal Electronic energy + Delta-G solvation = -26027.315687 eV Core-core repulsion = 21934.457155 eV Total energy + Delta-G solvation = -4092.858533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.67958 -39.95929 -39.07113 -37.67411 -36.40356 -35.38672 -34.22154 -32.89927 -30.86059 -30.23334 -29.19464 -26.94823 -26.01833 -23.18659 -23.00164 -22.30988 -21.97293 -19.66277 -19.32745 -18.66251 -17.69727 -17.40535 -16.86133 -16.57058 -16.45914 -16.14671 -15.95430 -15.42043 -15.32111 -14.77749 -14.64796 -14.27493 -13.74410 -13.54310 -13.52575 -13.16757 -12.91984 -12.81865 -12.63943 -12.21655 -12.12215 -11.71180 -11.49226 -11.30118 -11.01952 -10.99831 -10.93409 -10.71509 -10.68389 -10.60551 -10.25731 -10.20076 -9.70136 -9.41319 -9.10080 -9.09526 -8.50127 -7.82975 -6.11033 -4.16043 -0.44146 0.83919 1.27103 1.52444 2.16230 2.45896 2.72615 2.92212 3.15325 3.25915 3.33897 3.37870 3.74295 4.34928 4.38740 4.52858 4.66582 4.75699 4.85317 5.02179 5.09984 5.23859 5.28771 5.42261 5.51488 5.52224 5.66882 5.74714 5.93117 6.07900 6.13667 6.22914 6.39075 6.72514 6.92123 7.32677 7.36226 7.43651 7.66200 7.84844 8.14403 8.21331 8.76592 8.92225 9.49287 10.97163 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014020 B = 0.002504 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.725698 B =11180.675411 C =12569.746686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.247 3.753 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.051 3.949 16 O -0.325 6.325 17 C 0.536 3.464 18 O -0.492 6.492 19 C -0.219 4.219 20 C -0.062 4.062 21 C -0.071 4.071 22 C -0.250 4.250 23 C 0.597 3.403 24 N -0.847 5.847 25 O -0.527 6.527 26 S 0.263 5.737 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.403 0.597 40 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.785 -0.548 19.899 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.324 5.324 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.292 3.708 14 O -0.394 6.394 15 C -0.026 4.026 16 O -0.240 6.240 17 C 0.378 3.622 18 O -0.381 6.381 19 C -0.339 4.339 20 C -0.096 4.096 21 C -0.104 4.104 22 C -0.372 4.372 23 C 0.381 3.619 24 N -0.411 5.411 25 O -0.404 6.404 26 S 0.533 5.467 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.181 0.819 38 H 0.180 0.820 39 H 0.232 0.768 40 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -3.388 0.699 19.238 19.547 hybrid contribution 0.650 -1.070 0.278 1.282 sum -2.738 -0.370 19.516 19.710 Atomic orbital electron populations 1.22235 0.96457 1.01772 1.02439 1.21529 0.93807 0.83882 1.03119 1.48213 1.63669 1.13435 1.07084 1.19354 0.96555 0.93709 0.77483 1.21452 0.96797 1.32078 1.06379 0.92332 1.24933 0.97938 0.94832 0.96351 1.69934 1.35665 1.33305 1.14355 0.86431 0.84497 0.78096 0.78336 1.19782 1.20938 1.20826 1.19642 0.79840 0.87158 0.84209 1.90716 1.44545 1.17468 1.86700 1.23075 1.03054 0.92547 0.83916 1.86611 1.78683 1.44876 1.13824 1.19731 0.74871 0.84940 0.82653 1.90884 1.42291 1.18348 1.86590 1.23824 1.14865 0.99695 0.95486 1.20588 0.98254 1.01596 0.89147 1.20513 0.97492 0.90313 1.02109 1.25140 1.13214 1.00069 0.98764 1.17013 0.76435 0.81819 0.86663 1.43701 1.69993 1.15924 1.11506 1.90874 1.53821 1.82849 1.12858 1.84598 1.57377 1.06516 0.98164 0.91738 0.91826 0.93139 0.89317 0.91718 0.94560 0.93667 0.92686 0.88266 0.88345 0.81873 0.82032 0.76845 0.75634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.10 1.51 5.93 -4.04 -0.02 1.48 16 3 N -0.59 -11.86 2.46 -175.06 -0.43 -12.29 16 4 C 0.25 6.20 5.16 -5.19 -0.03 6.17 16 5 C -0.53 -14.49 9.39 -34.44 -0.32 -14.82 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 9 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.51 10.22 7.75 -10.99 -0.09 10.14 16 14 O -0.52 -12.73 16.08 -14.10 -0.23 -12.96 16 15 C 0.05 0.78 4.51 36.01 0.16 0.95 16 16 O -0.32 -5.12 9.60 -47.52 -0.46 -5.58 16 17 C 0.54 7.38 7.94 34.29 0.27 7.66 16 18 O -0.49 -7.29 16.61 -19.30 -0.32 -7.61 16 19 C -0.22 -2.45 6.46 -36.59 -0.24 -2.69 16 20 C -0.06 -0.57 9.88 -40.67 -0.40 -0.97 16 21 C -0.07 -0.61 9.88 -40.69 -0.40 -1.02 16 22 C -0.25 -2.29 6.46 -36.53 -0.24 -2.52 16 23 C 0.60 5.69 8.08 -12.62 -0.10 5.59 16 24 N -0.85 -5.12 8.87 30.38 0.27 -4.85 16 25 O -0.53 -6.76 17.65 5.26 0.09 -6.66 16 26 S 0.26 2.51 22.17 -107.50 -2.38 0.13 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.60 7.22 -51.93 -0.38 0.23 16 30 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 31 H 0.06 0.80 6.44 -51.93 -0.33 0.47 16 32 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.10 1.35 7.40 -51.93 -0.38 0.97 16 36 H 0.10 1.29 7.18 -51.93 -0.37 0.91 16 37 H 0.16 1.24 8.04 -52.49 -0.42 0.82 16 38 H 0.16 1.18 8.04 -52.49 -0.42 0.76 16 39 H 0.40 1.80 7.93 -40.82 -0.32 1.47 16 40 H 0.41 1.79 8.93 -40.82 -0.36 1.43 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -35.71 371.88 -7.87 -43.58 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -4.61 Total: -0.37 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -1.12 Total: 9.83 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.58 Total: -42.29 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -0.91 Total: -32.81 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.38 Total: 0.13 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.71 -7.87 -43.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748960592.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.182 kcal (2) G-P(sol) polarization free energy of solvation -35.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds