Wall clock time and date at job start Sat Apr 11 2020 05:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47222 * 2 1 4 4 C 1.46498 * 120.00074 * 270.00278 * 3 2 1 5 5 C 1.50705 * 109.47053 * 270.00026 * 4 3 2 6 6 H 1.07996 * 120.00003 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99693 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00415 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99765 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47185 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.46869 * 119.99913 * 9 7 5 12 12 H 1.48500 * 109.47173 * 240.00165 * 9 7 5 13 13 C 1.34774 * 119.99885 * 90.00358 * 3 2 1 14 14 O 1.21278 * 120.00437 * 179.97438 * 13 3 2 15 15 C 1.50702 * 119.99925 * 0.02562 * 13 3 2 16 16 O 1.45209 * 109.46995 * 179.97438 * 15 13 3 17 17 C 1.34826 * 116.99677 * 179.97438 * 16 15 13 18 18 O 1.21550 * 120.00231 * 0.02562 * 17 16 15 19 19 C 1.47012 * 119.99777 * 180.02562 * 17 16 15 20 20 C 1.36690 * 125.16167 * 180.02562 * 19 17 16 21 21 C 1.36775 * 114.72917 * 179.97438 * 20 19 17 22 22 C 1.36624 * 114.75499 * 359.97438 * 21 20 19 23 23 C 1.47199 * 125.15972 * 179.97438 * 22 21 20 24 24 N 1.34771 * 120.00416 * 179.97438 * 23 22 21 25 25 O 1.21624 * 119.99956 * 0.02562 * 23 22 21 26 26 S 1.75833 * 125.16526 * 359.96354 * 19 17 16 27 27 H 1.09000 * 109.47299 * 59.99333 * 1 2 3 28 28 H 1.08993 * 109.47151 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46903 * 299.99676 * 1 2 3 30 30 H 1.09003 * 109.46903 * 240.00324 * 2 1 3 31 31 H 1.09000 * 109.47299 * 120.00667 * 2 1 3 32 32 H 1.08997 * 109.47258 * 30.00140 * 4 3 2 33 33 H 1.09007 * 109.46968 * 150.00249 * 4 3 2 34 34 H 0.96998 * 120.00481 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.47244 * 60.00385 * 15 13 3 36 36 H 1.09000 * 109.47076 * 299.99870 * 15 13 3 37 37 H 1.07995 * 122.63806 * 0.23006 * 20 19 17 38 38 H 1.07997 * 122.61827 * 180.02562 * 21 20 19 39 39 H 0.96998 * 119.99897 * 0.02562 * 24 23 22 40 40 H 0.97003 * 120.00154 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0959 7 6 4.1493 2.3905 -2.8775 8 7 3.3496 3.1275 -3.6171 9 14 5.9137 2.0975 -3.4165 10 1 6.6010 1.2413 -2.4167 11 1 5.9216 1.4191 -4.7373 12 1 6.6210 3.3988 -3.5241 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1597 1.1673 15 6 1.9925 1.3058 2.4723 16 8 2.3075 2.1952 3.5760 17 6 2.1358 1.7093 4.8218 18 8 1.7342 0.5731 4.9811 19 6 2.4343 2.5536 5.9877 20 6 2.2993 2.1699 7.2927 21 6 2.6383 3.1274 8.2086 22 6 3.0572 4.3112 7.6703 23 6 3.4749 5.4928 8.4424 24 7 3.8710 6.6107 7.8022 25 8 3.4634 5.4600 9.6581 26 16 3.0207 4.2096 5.9153 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5816 1.6878 -2.0283 33 1 2.0955 3.1411 -1.1383 34 1 3.6756 3.5180 -4.4430 35 1 2.6230 0.4186 2.5298 36 1 0.9446 1.0113 2.5303 37 1 1.9560 1.1865 7.5782 38 1 2.5802 2.9605 9.2740 39 1 3.8805 6.6367 6.8326 40 1 4.1466 7.3892 8.3111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748960592.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:04 Heat of formation + Delta-G solvation = -143.693961 kcal Electronic energy + Delta-G solvation = -26028.396863 eV Core-core repulsion = 21934.457155 eV Total energy + Delta-G solvation = -4093.939709 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.81562 -40.75848 -40.55075 -38.52588 -37.51841 -36.97323 -34.93676 -34.91087 -31.89677 -31.57650 -30.50165 -28.53740 -27.06238 -24.92580 -24.21859 -23.32372 -22.85100 -20.58043 -20.24066 -20.03228 -18.67873 -18.65503 -18.19157 -17.92787 -17.73042 -17.43840 -16.89146 -16.74089 -16.29484 -16.11381 -15.98500 -15.46440 -14.88859 -14.78965 -14.59893 -14.35087 -14.11021 -13.95848 -13.70934 -13.57761 -13.47009 -13.28212 -13.06353 -12.69476 -12.51420 -12.32197 -12.24468 -12.09144 -11.96836 -11.82607 -11.69198 -11.51295 -10.92158 -10.75079 -10.64773 -10.19186 -9.82421 -9.54612 -8.23081 -6.37256 -1.23490 0.07227 0.51913 0.71239 1.05004 1.37673 1.39736 1.51107 1.54411 1.61657 1.97776 2.27492 2.29565 2.42772 3.07327 3.38822 3.46359 3.73388 3.89071 3.94383 3.94872 4.15240 4.16165 4.38636 4.59762 4.72432 4.77770 4.88749 4.95461 5.02374 5.04805 5.08843 5.20891 5.37217 5.54413 5.68744 5.79435 6.04315 6.11958 6.31728 6.60890 6.72261 7.02999 7.20495 7.36538 8.84517 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014020 B = 0.002504 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.725698 B =11180.675411 C =12569.746686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.263 3.737 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.267 1.267 11 H -0.270 1.270 12 H -0.282 1.282 13 C 0.500 3.500 14 O -0.575 6.575 15 C 0.063 3.937 16 O -0.344 6.344 17 C 0.540 3.460 18 O -0.505 6.505 19 C -0.249 4.249 20 C -0.041 4.041 21 C -0.071 4.071 22 C -0.245 4.245 23 C 0.596 3.404 24 N -0.829 5.829 25 O -0.563 6.563 26 S 0.267 5.733 27 H 0.043 0.957 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.029 0.971 33 H 0.001 0.999 34 H 0.267 0.733 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.181 0.819 38 H 0.178 0.822 39 H 0.412 0.588 40 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.449 -2.084 21.284 21.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.029 4.029 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.191 1.191 11 H -0.196 1.196 12 H -0.208 1.208 13 C 0.287 3.713 14 O -0.455 6.455 15 C -0.014 4.014 16 O -0.260 6.260 17 C 0.384 3.616 18 O -0.395 6.395 19 C -0.369 4.369 20 C -0.075 4.075 21 C -0.104 4.104 22 C -0.367 4.367 23 C 0.379 3.621 24 N -0.394 5.394 25 O -0.443 6.443 26 S 0.538 5.462 27 H 0.063 0.937 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.047 0.953 33 H 0.019 0.981 34 H 0.076 0.924 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.198 0.802 38 H 0.195 0.805 39 H 0.243 0.757 40 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -3.066 -0.859 20.606 20.851 hybrid contribution 0.516 -0.547 -0.110 0.760 sum -2.550 -1.406 20.496 20.702 Atomic orbital electron populations 1.22180 0.94321 1.03798 1.01878 1.21881 0.95555 0.80961 1.04494 1.48199 1.63539 1.15264 1.05658 1.18801 0.95574 0.91727 0.79727 1.21721 0.97780 1.32036 1.06558 0.92722 1.25827 1.02277 0.94462 0.96448 1.70047 1.37683 1.34129 1.14849 0.85380 0.79130 0.77999 0.78376 1.19113 1.19551 1.20782 1.20466 0.78449 0.86676 0.85726 1.90680 1.47040 1.20045 1.87700 1.22941 1.05189 0.91902 0.81340 1.86604 1.79210 1.45538 1.14674 1.19970 0.74296 0.85075 0.82289 1.90866 1.43176 1.18867 1.86582 1.23786 1.17415 1.00396 0.95294 1.20791 0.96289 1.02184 0.88196 1.20714 0.96999 0.89886 1.02843 1.25240 1.12616 1.00287 0.98542 1.17097 0.76293 0.82454 0.86218 1.43606 1.68298 1.15347 1.12125 1.90862 1.55712 1.83526 1.14234 1.84584 1.57370 1.05911 0.98324 0.93737 0.88422 0.92306 0.90023 0.88251 0.95263 0.98090 0.92374 0.85954 0.85513 0.80189 0.80494 0.75742 0.74473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 10.24 71.98 0.74 -3.02 16 2 C 0.09 2.63 5.93 86.38 0.51 3.15 16 3 N -0.59 -24.07 2.46 -826.16 -2.03 -26.10 16 4 C 0.26 13.68 5.16 85.64 0.44 14.13 16 5 C -0.54 -30.41 9.39 25.60 0.24 -30.16 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.51 5.46 84.65 0.46 0.97 16 8 N -0.93 -54.92 13.29 21.45 0.28 -54.64 16 9 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 C 0.50 20.29 7.75 87.66 0.68 20.97 16 14 O -0.57 -29.33 16.08 15.78 0.25 -29.08 16 15 C 0.06 1.82 4.51 71.24 0.32 2.14 16 16 O -0.34 -10.58 9.60 -50.99 -0.49 -11.07 16 17 C 0.54 14.11 7.94 70.12 0.56 14.66 16 18 O -0.50 -13.87 16.61 19.67 0.33 -13.55 16 19 C -0.25 -5.25 6.46 24.21 0.16 -5.10 16 20 C -0.04 -0.65 9.88 21.56 0.21 -0.44 16 21 C -0.07 -1.09 9.88 21.55 0.21 -0.88 16 22 C -0.24 -4.13 6.46 24.25 0.16 -3.98 16 23 C 0.60 10.63 8.08 86.60 0.70 11.33 16 24 N -0.83 -8.92 8.87 -176.05 -1.56 -10.48 16 25 O -0.56 -13.92 17.65 -4.11 -0.07 -14.00 16 26 S 0.27 4.86 22.17 -56.49 -1.25 3.61 16 27 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.26 7.22 -2.39 -0.02 1.24 16 30 H 0.08 2.44 8.07 -2.39 -0.02 2.42 16 31 H 0.10 2.14 6.44 -2.39 -0.02 2.13 16 32 H 0.03 1.54 8.07 -2.39 -0.02 1.52 16 33 H 0.00 0.06 7.42 -2.38 -0.02 0.04 16 34 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 35 H 0.12 2.99 7.40 -2.39 -0.02 2.98 16 36 H 0.13 2.96 7.18 -2.39 -0.02 2.94 16 37 H 0.18 2.25 8.04 -2.91 -0.02 2.22 16 38 H 0.18 2.18 8.04 -2.91 -0.02 2.16 16 39 H 0.41 3.12 7.93 -92.71 -0.74 2.39 16 40 H 0.42 3.08 8.93 -92.71 -0.83 2.26 16 Total: -1.00 -79.91 371.88 2.43 -77.48 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -0.45 Total: 8.06 kcal Atomic # 6 Polarization: 18.38 SS G_CDS: 5.39 Total: 23.77 kcal Atomic # 7 Polarization: -87.92 SS G_CDS: -3.31 Total: -91.22 kcal Atomic # 8 Polarization: -67.71 SS G_CDS: 0.02 Total: -67.69 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 4.86 SS G_CDS: -1.25 Total: 3.61 kcal Total: -79.91 2.43 -77.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748960592.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.217 kcal (2) G-P(sol) polarization free energy of solvation -79.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds