Wall clock time and date at job start Sat Apr 11 2020 05:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46809 * 2 1 4 4 C 1.50691 * 109.47250 * 120.00295 * 2 1 3 5 5 O 1.20833 * 119.99771 * 120.00099 * 4 2 1 6 6 O 1.34228 * 120.00416 * 299.99947 * 4 2 1 7 7 C 1.45195 * 117.00360 * 179.97438 * 6 4 2 8 8 C 1.50704 * 109.47364 * 180.02562 * 7 6 4 9 9 O 1.21286 * 119.99667 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00104 * 180.02562 * 8 7 6 11 11 C 1.37095 * 119.99692 * 179.97438 * 10 8 7 12 12 H 1.07994 * 120.00208 * 359.97438 * 11 10 8 13 13 C 1.38954 * 119.99927 * 179.97438 * 11 10 8 14 14 N 1.31408 * 120.00252 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99679 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.46765 * 90.00459 * 15 13 11 17 17 H 1.48494 * 109.46961 * 210.00028 * 15 13 11 18 18 H 1.48495 * 109.47250 * 330.00240 * 15 13 11 19 19 C 1.50705 * 109.47042 * 240.00545 * 2 1 3 20 20 C 1.38214 * 120.01059 * 299.99749 * 19 2 1 21 21 C 1.38225 * 120.02588 * 179.97438 * 20 19 2 22 22 C 1.38275 * 120.05072 * 359.97438 * 21 20 19 23 23 N 1.47998 * 119.98601 * 180.02562 * 22 21 20 24 24 O 1.21801 * 120.00340 * 0.02562 * 23 22 21 25 25 O 1.21800 * 119.99899 * 179.97438 * 23 22 21 26 26 C 1.38172 * 120.02282 * 0.02562 * 22 21 20 27 27 C 1.38431 * 120.01288 * 119.97568 * 19 2 1 28 28 F 1.35101 * 120.02486 * 359.97438 * 27 19 2 29 29 H 1.08998 * 109.47333 * 59.99683 * 1 2 3 30 30 H 1.09005 * 109.46558 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46872 * 299.99111 * 1 2 3 32 32 H 1.09001 * 109.47444 * 300.00529 * 7 6 4 33 33 H 1.09007 * 109.47193 * 60.00230 * 7 6 4 34 34 H 0.97001 * 119.99754 * 359.97438 * 10 8 7 35 35 H 0.96996 * 119.99939 * 179.97438 * 14 13 11 36 36 H 1.07999 * 119.99303 * 0.02562 * 20 19 2 37 37 H 1.07993 * 119.97788 * 179.72581 * 21 20 19 38 38 H 1.08005 * 120.01385 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.7271 -1.6928 1.1194 6 8 1.7082 -0.2520 2.4495 7 6 2.2269 -0.9865 3.5895 8 6 1.7620 -0.3301 4.8639 9 8 1.0628 0.6597 4.8161 10 7 2.1242 -0.8424 6.0568 11 6 1.7017 -0.2448 7.2161 12 1 1.0791 0.6365 7.1735 13 6 2.0746 -0.7733 8.4459 14 7 1.6692 -0.2009 9.5572 15 14 3.1510 -2.2982 8.5195 16 1 4.5801 -1.8949 8.5392 17 1 2.8366 -3.0670 9.7505 18 1 2.8920 -3.1450 7.3275 19 6 2.0324 -0.7103 -1.2306 20 6 1.6986 -2.0336 -1.4496 21 6 2.1588 -2.6852 -2.5784 22 6 2.9529 -2.0141 -3.4900 23 7 3.4443 -2.7131 -4.6985 24 8 3.1488 -3.8791 -4.8902 25 8 4.1434 -2.1220 -5.5019 26 6 3.2878 -0.6913 -3.2731 27 6 2.8278 -0.0376 -2.1422 28 9 3.1539 1.2561 -1.9295 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8628 -2.0134 3.5563 33 1 3.3165 -0.9862 3.5567 34 1 2.6837 -1.6338 6.0950 35 1 1.9292 -0.5700 10.4156 36 1 1.0774 -2.5584 -0.7390 37 1 1.9012 -3.7204 -2.7466 38 1 3.9077 -0.1671 -3.9855 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755057697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:13 Heat of formation + Delta-G solvation = -134.606139 kcal Electronic energy + Delta-G solvation = -28264.247569 eV Core-core repulsion = 23604.488761 eV Total energy + Delta-G solvation = -4659.758807 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.099 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.73790 -42.63076 -41.10939 -39.76322 -38.44925 -37.00024 -36.54037 -35.18750 -34.15843 -31.89318 -31.67396 -31.20470 -28.78444 -27.15690 -25.31918 -24.39811 -23.88607 -22.84468 -20.73643 -20.07879 -19.76274 -19.22113 -18.71975 -18.03278 -17.96242 -17.18395 -17.10974 -17.05206 -16.60247 -16.37470 -15.94885 -15.60622 -15.00203 -14.91319 -14.47542 -14.15834 -13.85655 -13.65357 -13.33679 -13.20999 -12.97685 -12.78521 -12.61590 -12.33796 -12.26311 -12.20864 -11.99011 -11.81029 -11.60180 -11.55041 -11.33954 -10.74076 -10.71630 -10.69107 -10.13903 -10.12108 -9.76104 -9.73934 -8.77795 -8.37779 -6.46772 -4.00150 -0.78821 0.17338 0.73743 0.84189 1.89862 2.20480 2.61247 2.91762 2.96968 3.06353 3.23893 3.44775 3.52626 3.66467 3.90539 3.96538 4.08717 4.18705 4.40015 4.51760 4.57658 4.67042 4.86910 5.02165 5.03055 5.07389 5.15634 5.18040 5.28161 5.39757 5.42264 5.55719 5.61621 5.73187 5.91553 6.24648 7.17893 7.34304 7.49844 7.92047 8.38836 8.75447 9.21333 9.55644 10.65278 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.021871 B = 0.002126 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.933329 B =13168.100945 C =13832.006242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 H 0.131 0.869 4 C 0.466 3.534 5 O -0.507 6.507 6 O -0.316 6.316 7 C 0.058 3.942 8 C 0.445 3.555 9 O -0.557 6.557 10 N -0.577 5.577 11 C -0.310 4.310 12 H 0.123 0.877 13 C 0.046 3.954 14 N -0.872 5.872 15 Si 0.879 3.121 16 H -0.268 1.268 17 H -0.274 1.274 18 H -0.268 1.268 19 C -0.055 4.055 20 C -0.056 4.056 21 C -0.062 4.062 22 C -0.016 4.016 23 N 0.028 4.972 24 O -0.149 6.149 25 O -0.154 6.154 26 C -0.094 4.094 27 C 0.118 3.882 28 F -0.116 7.116 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.373 0.627 35 H 0.276 0.724 36 H 0.158 0.842 37 H 0.163 0.837 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.870 -4.344 -24.846 25.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 H 0.149 0.851 4 C 0.308 3.692 5 O -0.395 6.395 6 O -0.230 6.230 7 C -0.020 4.020 8 C 0.230 3.770 9 O -0.439 6.439 10 N -0.217 5.217 11 C -0.438 4.438 12 H 0.140 0.860 13 C -0.159 4.159 14 N -0.511 5.511 15 Si 0.705 3.295 16 H -0.194 1.194 17 H -0.199 1.199 18 H -0.194 1.194 19 C -0.056 4.056 20 C -0.075 4.075 21 C -0.081 4.081 22 C -0.099 4.099 23 N 0.549 4.451 24 O -0.367 6.367 25 O -0.371 6.371 26 C -0.113 4.113 27 C 0.098 3.902 28 F -0.094 7.094 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.206 0.794 35 H 0.087 0.913 36 H 0.176 0.824 37 H 0.181 0.819 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.369 -3.553 -24.014 24.278 hybrid contribution 1.325 -1.281 0.069 1.845 sum 1.694 -4.834 -23.945 24.487 Atomic orbital electron populations 1.21870 0.89322 1.03929 1.05038 1.19960 0.99780 1.01083 0.86252 0.85092 1.23190 0.77782 0.82875 0.85333 1.90696 1.35526 1.25836 1.87454 1.86537 1.68410 1.54366 1.13648 1.22828 0.99758 0.95690 0.83714 1.19130 0.86730 0.87648 0.83463 1.90609 1.40259 1.26758 1.86264 1.42035 1.46900 1.27325 1.05449 1.19419 1.30874 1.12555 0.80940 0.85960 1.25050 0.97674 0.98187 0.94949 1.69606 1.43893 1.40002 0.97627 0.86680 0.81314 0.82771 0.78728 1.19372 1.19868 1.19386 1.19900 0.95758 0.95001 0.94962 1.20938 0.98243 0.92494 0.95795 1.21118 0.93491 1.01921 0.91549 1.20772 1.05759 0.93583 0.89805 1.43489 0.98995 1.00979 1.01630 1.94567 1.60989 0.99963 1.81175 1.94567 1.34107 1.68004 1.40396 1.20814 0.99980 0.92795 0.97747 1.16959 0.98348 0.80046 0.94823 1.91597 1.90723 1.32671 1.94403 0.90450 0.91356 0.88980 0.89240 0.89283 0.79379 0.91296 0.82420 0.81927 0.81419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.94 37.16 0.33 -0.67 16 2 C -0.05 -0.45 2.99 -92.92 -0.28 -0.73 16 3 H 0.13 1.05 7.13 -51.93 -0.37 0.68 16 4 C 0.47 5.79 7.13 36.00 0.26 6.05 16 5 O -0.51 -6.98 14.86 -18.76 -0.28 -7.26 16 6 O -0.32 -4.90 9.66 -45.90 -0.44 -5.34 16 7 C 0.06 0.93 5.94 36.01 0.21 1.15 16 8 C 0.45 9.70 7.86 -10.98 -0.09 9.61 16 9 O -0.56 -14.50 16.08 -14.11 -0.23 -14.73 16 10 N -0.58 -13.08 5.09 -10.96 -0.06 -13.13 16 11 C -0.31 -8.38 10.16 -14.93 -0.15 -8.53 16 12 H 0.12 3.78 7.39 -52.49 -0.39 3.40 16 13 C 0.05 1.20 5.50 -17.47 -0.10 1.11 16 14 N -0.87 -24.45 13.96 55.50 0.77 -23.68 16 15 Si 0.88 18.43 27.74 -169.99 -4.71 13.72 16 16 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 17 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 18 H -0.27 -5.09 6.52 56.52 0.37 -4.72 16 19 C -0.05 -0.44 4.40 -104.56 -0.46 -0.90 16 20 C -0.06 -0.40 7.93 -39.59 -0.31 -0.71 16 21 C -0.06 -0.44 9.55 -39.57 -0.38 -0.81 16 22 C -0.02 -0.14 6.85 -79.97 -0.55 -0.69 16 23 N 0.03 0.29 4.45 33.95 0.15 0.44 16 24 O -0.15 -1.64 18.45 -29.46 -0.54 -2.19 16 25 O -0.15 -1.72 18.45 -29.46 -0.54 -2.26 16 26 C -0.09 -0.72 9.53 -39.51 -0.38 -1.10 16 27 C 0.12 0.95 7.25 -39.42 -0.29 0.67 16 28 F -0.12 -0.98 16.19 2.25 0.04 -0.95 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.41 7.39 -51.93 -0.38 0.02 16 31 H 0.09 0.76 8.11 -51.93 -0.42 0.34 16 32 H 0.09 1.25 8.13 -51.93 -0.42 0.83 16 33 H 0.09 1.28 8.13 -51.92 -0.42 0.85 16 34 H 0.37 7.32 5.76 -40.82 -0.24 7.08 16 35 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.16 0.92 7.52 -52.49 -0.39 0.53 16 37 H 0.16 0.88 7.61 -52.49 -0.40 0.48 16 38 H 0.17 1.07 7.61 -52.48 -0.40 0.67 16 LS Contribution 350.92 15.07 5.29 5.29 Total: -1.00 -33.09 350.92 -6.15 -39.24 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -3.43 Total: 6.41 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -2.17 Total: 4.44 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.87 Total: -36.37 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -2.04 Total: -31.78 kcal Atomic # 9 Polarization: -0.98 SS G_CDS: 0.04 Total: -0.95 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -4.71 Total: 13.72 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.09 -6.15 -39.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755057697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.363 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds