Wall clock time and date at job start Sat Apr 11 2020 05:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46809 * 2 1 4 4 C 1.50691 * 109.47250 * 120.00295 * 2 1 3 5 5 O 1.20833 * 119.99771 * 120.00099 * 4 2 1 6 6 O 1.34228 * 120.00416 * 299.99947 * 4 2 1 7 7 C 1.45195 * 117.00360 * 179.97438 * 6 4 2 8 8 C 1.50704 * 109.47364 * 180.02562 * 7 6 4 9 9 O 1.21286 * 119.99667 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00104 * 180.02562 * 8 7 6 11 11 C 1.37095 * 119.99692 * 179.97438 * 10 8 7 12 12 H 1.07994 * 120.00208 * 359.97438 * 11 10 8 13 13 C 1.38954 * 119.99927 * 179.97438 * 11 10 8 14 14 N 1.31408 * 120.00252 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99679 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.46765 * 90.00459 * 15 13 11 17 17 H 1.48494 * 109.46961 * 210.00028 * 15 13 11 18 18 H 1.48495 * 109.47250 * 330.00240 * 15 13 11 19 19 C 1.50705 * 109.47042 * 240.00545 * 2 1 3 20 20 C 1.38214 * 120.01059 * 299.99749 * 19 2 1 21 21 C 1.38225 * 120.02588 * 179.97438 * 20 19 2 22 22 C 1.38275 * 120.05072 * 359.97438 * 21 20 19 23 23 N 1.47998 * 119.98601 * 180.02562 * 22 21 20 24 24 O 1.21801 * 120.00340 * 0.02562 * 23 22 21 25 25 O 1.21800 * 119.99899 * 179.97438 * 23 22 21 26 26 C 1.38172 * 120.02282 * 0.02562 * 22 21 20 27 27 C 1.38431 * 120.01288 * 119.97568 * 19 2 1 28 28 F 1.35101 * 120.02486 * 359.97438 * 27 19 2 29 29 H 1.08998 * 109.47333 * 59.99683 * 1 2 3 30 30 H 1.09005 * 109.46558 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46872 * 299.99111 * 1 2 3 32 32 H 1.09001 * 109.47444 * 300.00529 * 7 6 4 33 33 H 1.09007 * 109.47193 * 60.00230 * 7 6 4 34 34 H 0.97001 * 119.99754 * 359.97438 * 10 8 7 35 35 H 0.96996 * 119.99939 * 179.97438 * 14 13 11 36 36 H 1.07999 * 119.99303 * 0.02562 * 20 19 2 37 37 H 1.07993 * 119.97788 * 179.72581 * 21 20 19 38 38 H 1.08005 * 120.01385 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.7271 -1.6928 1.1194 6 8 1.7082 -0.2520 2.4495 7 6 2.2269 -0.9865 3.5895 8 6 1.7620 -0.3301 4.8639 9 8 1.0628 0.6597 4.8161 10 7 2.1242 -0.8424 6.0568 11 6 1.7017 -0.2448 7.2161 12 1 1.0791 0.6365 7.1735 13 6 2.0746 -0.7733 8.4459 14 7 1.6692 -0.2009 9.5572 15 14 3.1510 -2.2982 8.5195 16 1 4.5801 -1.8949 8.5392 17 1 2.8366 -3.0670 9.7505 18 1 2.8920 -3.1450 7.3275 19 6 2.0324 -0.7103 -1.2306 20 6 1.6986 -2.0336 -1.4496 21 6 2.1588 -2.6852 -2.5784 22 6 2.9529 -2.0141 -3.4900 23 7 3.4443 -2.7131 -4.6985 24 8 3.1488 -3.8791 -4.8902 25 8 4.1434 -2.1220 -5.5019 26 6 3.2878 -0.6913 -3.2731 27 6 2.8278 -0.0376 -2.1422 28 9 3.1539 1.2561 -1.9295 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8628 -2.0134 3.5563 33 1 3.3165 -0.9862 3.5567 34 1 2.6837 -1.6338 6.0950 35 1 1.9292 -0.5700 10.4156 36 1 1.0774 -2.5584 -0.7390 37 1 1.9012 -3.7204 -2.7466 38 1 3.9077 -0.1671 -3.9855 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755057697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:12 Heat of formation + Delta-G solvation = -154.444306 kcal Electronic energy + Delta-G solvation = -28265.107816 eV Core-core repulsion = 23604.488761 eV Total energy + Delta-G solvation = -4660.619055 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.099 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.36571 -43.37881 -42.06837 -40.63835 -40.05342 -37.78880 -37.68535 -36.09730 -35.89946 -33.87699 -32.25790 -31.89239 -30.20170 -27.83310 -26.71874 -25.57304 -24.51633 -23.64040 -21.64345 -21.54443 -20.76202 -20.54961 -19.97691 -18.95137 -18.72788 -18.22129 -17.99911 -17.74564 -17.57820 -17.32709 -16.96817 -16.94617 -16.45724 -15.90363 -15.41889 -15.41679 -14.80556 -14.70424 -14.46892 -14.25323 -14.04894 -13.90950 -13.87311 -13.47539 -13.24751 -13.02221 -12.91485 -12.76973 -12.46939 -12.45991 -12.37716 -12.34156 -12.01588 -11.91202 -11.62033 -11.59825 -10.74972 -10.61773 -10.35321 -10.33105 -8.46959 -6.10204 -1.49612 -0.39576 0.00756 0.14732 0.93827 1.21819 1.29545 1.32869 1.43835 1.74849 1.94063 2.19194 2.62100 2.75768 2.87007 3.07494 3.10491 3.33249 3.48630 3.59332 3.80265 3.88102 3.93027 3.97076 4.08737 4.12214 4.28870 4.47812 4.53497 4.62252 4.74902 4.84429 4.95813 5.15598 5.19845 5.26515 5.46240 5.84522 6.35608 6.40575 6.52537 6.76522 7.24718 7.76466 8.69500 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.021871 B = 0.002126 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.933329 B =13168.100945 C =13832.006242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 H 0.137 0.863 4 C 0.469 3.531 5 O -0.517 6.517 6 O -0.337 6.337 7 C 0.068 3.932 8 C 0.448 3.552 9 O -0.608 6.608 10 N -0.576 5.576 11 C -0.332 4.332 12 H 0.061 0.939 13 C -0.009 4.009 14 N -0.925 5.925 15 Si 0.961 3.039 16 H -0.257 1.257 17 H -0.273 1.273 18 H -0.229 1.229 19 C -0.056 4.056 20 C -0.054 4.054 21 C -0.052 4.052 22 C -0.026 4.026 23 N 0.029 4.971 24 O -0.158 6.158 25 O -0.176 6.176 26 C -0.091 4.091 27 C 0.115 3.885 28 F -0.120 7.120 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.393 0.607 35 H 0.282 0.718 36 H 0.175 0.825 37 H 0.181 0.819 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.887 -6.850 -26.334 27.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 H 0.155 0.845 4 C 0.312 3.688 5 O -0.406 6.406 6 O -0.252 6.252 7 C -0.009 4.009 8 C 0.235 3.765 9 O -0.492 6.492 10 N -0.218 5.218 11 C -0.461 4.461 12 H 0.079 0.921 13 C -0.209 4.209 14 N -0.565 5.565 15 Si 0.780 3.220 16 H -0.181 1.181 17 H -0.198 1.198 18 H -0.152 1.152 19 C -0.057 4.057 20 C -0.072 4.072 21 C -0.071 4.071 22 C -0.109 4.109 23 N 0.547 4.453 24 O -0.376 6.376 25 O -0.389 6.389 26 C -0.110 4.110 27 C 0.094 3.906 28 F -0.098 7.098 29 H 0.117 0.883 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.229 0.771 35 H 0.092 0.908 36 H 0.192 0.808 37 H 0.198 0.802 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.406 -6.061 -25.556 26.303 hybrid contribution 0.922 -0.387 0.497 1.116 sum 2.328 -6.448 -25.059 25.980 Atomic orbital electron populations 1.21904 0.87875 1.04897 1.05298 1.20027 1.00890 1.00937 0.84663 0.84538 1.23783 0.77245 0.82790 0.84939 1.90688 1.36048 1.26459 1.87392 1.86542 1.69068 1.55044 1.14537 1.22639 1.01071 0.96021 0.81196 1.20199 0.84745 0.86575 0.85017 1.90588 1.42159 1.29086 1.87384 1.41822 1.47461 1.27980 1.04564 1.18989 1.31659 1.11987 0.83483 0.92069 1.26098 0.98913 1.02247 0.93615 1.69778 1.45650 1.42405 0.98643 0.85425 0.78782 0.77558 0.80200 1.18109 1.19802 1.15248 1.19918 0.95810 0.95429 0.94550 1.21127 0.98100 0.92076 0.95919 1.21342 0.92295 1.02637 0.90789 1.20869 1.06720 0.93912 0.89401 1.43733 0.98659 1.00895 1.02010 1.94550 1.61063 1.00432 1.81518 1.94562 1.34960 1.68040 1.41309 1.20898 0.99737 0.92615 0.97768 1.16961 0.98626 0.79950 0.95031 1.91589 1.90827 1.32983 1.94439 0.88318 0.90096 0.90593 0.86088 0.86662 0.77099 0.90839 0.80800 0.80172 0.80553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.94 71.98 0.64 -1.00 16 2 C -0.05 -0.70 2.99 -12.29 -0.04 -0.74 16 3 H 0.14 1.94 7.13 -2.39 -0.02 1.92 16 4 C 0.47 10.46 7.13 71.23 0.51 10.97 16 5 O -0.52 -12.55 14.86 21.94 0.33 -12.22 16 6 O -0.34 -9.83 9.66 -45.04 -0.43 -10.27 16 7 C 0.07 2.01 5.94 71.24 0.42 2.43 16 8 C 0.45 19.31 7.86 87.66 0.69 20.00 16 9 O -0.61 -32.64 16.08 15.75 0.25 -32.39 16 10 N -0.58 -25.74 5.09 -306.99 -1.56 -27.30 16 11 C -0.33 -18.61 10.16 84.04 0.85 -17.75 16 12 H 0.06 4.09 7.39 -2.91 -0.02 4.07 16 13 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 14 N -0.93 -53.57 13.96 21.66 0.30 -53.27 16 15 Si 0.96 36.63 27.74 68.60 1.90 38.53 16 16 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 17 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 18 H -0.23 -7.23 6.52 99.48 0.65 -6.58 16 19 C -0.06 -0.75 4.40 -19.82 -0.09 -0.84 16 20 C -0.05 -0.59 7.93 22.26 0.18 -0.42 16 21 C -0.05 -0.59 9.55 22.28 0.21 -0.37 16 22 C -0.03 -0.39 6.85 36.37 0.25 -0.14 16 23 N 0.03 0.57 4.45 -46.49 -0.21 0.37 16 24 O -0.16 -3.28 18.45 18.88 0.35 -2.93 16 25 O -0.18 -3.82 18.45 18.89 0.35 -3.47 16 26 C -0.09 -1.24 9.53 22.31 0.21 -1.02 16 27 C 0.11 1.61 7.25 22.38 0.16 1.77 16 28 F -0.12 -1.85 16.19 44.97 0.73 -1.12 16 29 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.73 7.39 -2.38 -0.02 0.71 16 31 H 0.08 1.16 8.11 -2.39 -0.02 1.14 16 32 H 0.12 2.88 8.13 -2.39 -0.02 2.86 16 33 H 0.12 2.87 8.13 -2.38 -0.02 2.85 16 34 H 0.39 14.25 5.76 -92.71 -0.53 13.71 16 35 H 0.28 14.87 8.31 -92.71 -0.77 14.10 16 36 H 0.17 1.37 7.52 -2.91 -0.02 1.35 16 37 H 0.18 1.38 7.61 -2.91 -0.02 1.36 16 38 H 0.18 2.02 7.61 -2.91 -0.02 2.00 16 Total: -1.00 -76.32 350.92 7.04 -69.28 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.56 Total: 21.91 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 4.47 Total: 12.89 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -1.47 Total: -80.20 kcal Atomic # 8 Polarization: -62.12 SS G_CDS: 0.84 Total: -61.28 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.73 Total: -1.12 kcal Atomic # 14 Polarization: 36.63 SS G_CDS: 1.90 Total: 38.53 kcal Total: -76.32 7.04 -69.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755057697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.163 kcal (2) G-P(sol) polarization free energy of solvation -76.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds