Wall clock time and date at job start Sat Apr 11 2020 05:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46491 * 120.00435 * 2 1 4 4 C 1.50702 * 109.47698 * 275.55812 * 3 2 1 5 5 H 1.08005 * 119.99136 * 4.95231 * 4 3 2 6 6 C 1.37872 * 120.00612 * 184.95650 * 4 3 2 7 7 N 1.31508 * 120.00169 * 179.97438 * 6 4 3 8 8 Si 1.86805 * 119.99729 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.47008 * 90.00276 * 8 6 4 10 10 H 1.48496 * 109.46718 * 209.99926 * 8 6 4 11 11 H 1.48495 * 109.47201 * 330.00081 * 8 6 4 12 12 S 1.65604 * 119.99492 * 180.02562 * 2 1 3 13 13 O 1.42102 * 106.39967 * 159.52317 * 12 2 1 14 14 O 1.42097 * 106.40678 * 26.60403 * 12 2 1 15 15 N 1.65604 * 107.21624 * 273.05831 * 12 2 1 16 16 C 1.46491 * 119.99751 * 62.74333 * 15 12 2 17 17 C 1.53008 * 109.47332 * 164.42106 * 16 15 12 18 18 S 1.81397 * 109.47236 * 179.97438 * 17 16 15 19 19 O 1.42093 * 108.57969 * 65.50947 * 18 17 16 20 20 O 1.42100 * 108.57710 * 294.48452 * 18 17 16 21 21 C 1.81393 * 101.91962 * 179.97438 * 18 17 16 22 22 C 1.53000 * 109.47427 * 179.97438 * 21 18 17 23 23 C 1.53001 * 117.50179 * 243.75089 * 22 21 18 24 24 C 1.52996 * 117.50591 * 175.08730 * 22 21 18 25 25 H 1.09001 * 109.47061 * 269.99975 * 1 2 3 26 26 H 1.08996 * 109.46750 * 29.99537 * 1 2 3 27 27 H 1.08997 * 109.47089 * 149.99746 * 1 2 3 28 28 H 1.09009 * 109.46914 * 35.55383 * 3 2 1 29 29 H 1.09000 * 109.47483 * 155.55468 * 3 2 1 30 30 H 0.97001 * 120.00241 * 179.97438 * 7 6 4 31 31 H 0.96998 * 119.99640 * 242.73599 * 15 12 2 32 32 H 1.08995 * 109.48013 * 44.41453 * 16 15 12 33 33 H 1.09010 * 109.47083 * 284.41577 * 16 15 12 34 34 H 1.08995 * 109.46729 * 59.99181 * 17 16 15 35 35 H 1.09001 * 109.46392 * 299.99675 * 17 16 15 36 36 H 1.09002 * 109.47376 * 59.99761 * 21 18 17 37 37 H 1.09001 * 109.47465 * 299.99854 * 21 18 17 38 38 H 1.09005 * 115.55021 * 29.41151 * 22 21 18 39 39 H 1.09005 * 117.49741 * 359.97438 * 23 22 21 40 40 H 1.08999 * 117.50079 * 145.01688 * 23 22 21 41 41 H 1.08994 * 117.50434 * 214.98366 * 24 22 21 42 42 H 1.09006 * 117.49175 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3297 1.7725 -1.4141 5 1 1.8420 1.2475 -2.2222 6 6 3.0731 2.9037 -1.6763 7 7 3.1887 3.3431 -2.9104 8 14 3.9161 3.8121 -0.2785 9 1 5.2814 3.2618 -0.0829 10 1 4.0075 5.2565 -0.6110 11 1 3.1295 3.6401 0.9692 12 16 2.2929 -1.4342 -0.0006 13 8 3.5995 -1.1431 -0.4774 14 8 1.4380 -2.3909 -0.6115 15 7 2.4649 -1.9016 1.5787 16 6 1.2802 -2.1954 2.3887 17 6 1.6987 -2.9604 3.6460 18 16 0.2318 -3.3234 4.6494 19 8 -0.6018 -4.2180 3.9256 20 8 -0.3102 -2.0967 5.1193 21 6 0.9511 -4.2147 6.0560 22 6 -0.1595 -4.6101 7.0312 23 6 -0.1203 -3.9977 8.4327 24 6 0.2295 -5.4744 8.2322 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5139 28 1 1.6552 2.0014 0.5976 29 1 3.1895 1.1155 0.4253 30 1 3.7114 4.1391 -3.0949 31 1 3.3501 -1.9810 1.9674 32 1 0.5847 -2.8021 1.8089 33 1 0.7958 -1.2619 2.6759 34 1 2.3941 -2.3535 4.2258 35 1 2.1830 -3.8937 3.3589 36 1 1.6690 -3.5715 6.5650 37 1 1.4569 -5.1114 5.6978 38 1 -1.1388 -4.7813 6.5841 39 1 0.6971 -3.3133 8.6602 40 1 -1.0736 -3.7664 8.9078 41 1 -0.4939 -6.2140 8.5755 42 1 1.2767 -5.7616 8.3274 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765234657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:18 Heat of formation + Delta-G solvation = -148.074273 kcal Electronic energy + Delta-G solvation = -25816.070381 eV Core-core repulsion = 21857.384679 eV Total energy + Delta-G solvation = -3958.685702 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.43963 -38.39631 -38.00497 -37.37985 -37.15799 -36.92756 -36.89006 -34.51232 -31.34822 -30.28993 -30.23965 -26.83216 -24.62394 -23.85118 -23.26867 -21.83394 -20.69120 -19.81141 -19.18852 -18.81062 -18.32507 -18.16193 -17.37853 -17.21921 -16.94943 -16.55834 -16.07446 -15.87305 -15.78814 -15.32277 -15.14384 -14.64520 -14.51619 -14.24294 -14.10089 -13.87408 -13.45027 -13.28514 -13.18699 -13.13048 -13.08169 -13.03056 -13.00899 -12.93677 -12.74553 -12.37033 -12.36846 -12.27349 -12.25313 -12.03690 -11.74904 -11.70081 -11.15982 -10.86897 -10.78197 -10.66726 -9.81430 -8.28936 -6.35153 -1.07663 -0.40382 1.37644 1.41703 1.50381 1.81818 1.94632 2.36207 2.54656 2.62206 2.77319 3.05297 3.12941 3.32097 3.45540 3.52828 3.78721 3.91250 3.98475 4.02975 4.12386 4.22863 4.36157 4.39773 4.52578 4.56726 4.65393 4.70575 4.80949 4.87054 4.87945 5.03887 5.05753 5.15829 5.25372 5.31637 5.47519 5.67863 6.07433 6.30313 6.68138 7.28165 8.88541 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.002691 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.132014 B =10403.873284 C =10944.965639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.999 5.999 3 C 0.232 3.768 4 C -0.546 4.546 5 H 0.028 0.972 6 C 0.005 3.995 7 N -0.949 5.949 8 Si 0.945 3.055 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.227 1.227 12 S 2.793 3.207 13 O -1.003 7.003 14 O -1.010 7.010 15 N -1.107 6.107 16 C 0.107 3.893 17 C -0.618 4.618 18 S 2.422 3.578 19 O -0.977 6.977 20 O -0.970 6.970 21 C -0.557 4.557 22 C -0.183 4.183 23 C -0.180 4.180 24 C -0.155 4.155 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.268 0.732 31 H 0.431 0.569 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.179 0.821 35 H 0.172 0.828 36 H 0.166 0.834 37 H 0.168 0.832 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.759 -16.841 28.122 32.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.841 5.841 3 C 0.108 3.892 4 C -0.585 4.585 5 H 0.046 0.954 6 C -0.193 4.193 7 N -0.589 5.589 8 Si 0.767 3.233 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.150 1.150 12 S 2.801 3.199 13 O -0.987 6.987 14 O -0.993 6.993 15 N -0.873 5.873 16 C -0.020 4.020 17 C -0.748 4.748 18 S 2.608 3.392 19 O -0.974 6.974 20 O -0.967 6.967 21 C -0.689 4.689 22 C -0.202 4.202 23 C -0.217 4.217 24 C -0.193 4.193 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.268 0.732 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.196 0.804 35 H 0.190 0.810 36 H 0.184 0.816 37 H 0.186 0.814 38 H 0.122 0.878 39 H 0.131 0.869 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.487 -16.925 26.963 32.026 hybrid contribution 1.278 0.610 -0.011 1.416 sum -2.210 -16.315 26.952 31.583 Atomic orbital electron populations 1.21712 0.77980 1.03910 1.02997 1.57306 1.15784 1.21578 1.89414 1.19265 0.92189 0.82273 0.95510 1.21719 1.31804 1.11044 0.93940 0.95351 1.25979 0.96537 0.98073 0.98704 1.70073 1.42130 1.24941 1.21724 0.85758 0.79761 0.77523 0.80261 1.19333 1.20562 1.14994 1.01373 0.72182 0.72605 0.73743 1.93590 1.40701 1.85077 1.79341 1.93522 1.69114 1.61184 1.75459 1.55662 1.15088 1.85005 1.31499 1.21186 0.87937 1.01036 0.91823 1.30591 1.22081 1.12837 1.09305 1.07762 0.78008 0.75398 0.78030 1.93566 1.64816 1.66543 1.72499 1.93565 1.76695 1.45358 1.81048 1.29753 1.09015 1.15646 1.14483 1.21834 0.98455 1.09234 0.90696 1.23309 1.04549 0.97130 0.96715 1.23150 1.03887 0.93831 0.98453 0.89904 0.90923 0.90917 0.92476 0.94177 0.92351 0.73181 0.89704 0.89172 0.80352 0.81034 0.81604 0.81448 0.87794 0.86942 0.88142 0.87735 0.86647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.58 10.69 127.77 1.37 3.95 16 2 N -1.00 -39.20 3.23 -543.23 -1.75 -40.95 16 3 C 0.23 10.54 4.16 85.64 0.36 10.89 16 4 C -0.55 -31.74 9.93 25.60 0.25 -31.48 16 5 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 6 C 0.00 0.28 5.47 84.65 0.46 0.74 16 7 N -0.95 -60.28 13.96 21.44 0.30 -59.98 16 8 Si 0.95 42.57 27.37 68.60 1.88 44.45 16 9 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.23 -8.81 6.69 99.48 0.67 -8.14 16 12 S 2.79 104.34 6.09 -56.49 -0.34 104.00 16 13 O -1.00 -45.97 16.99 -128.00 -2.18 -48.15 16 14 O -1.01 -41.38 16.34 -128.00 -2.09 -43.47 16 15 N -1.11 -26.01 6.05 -187.49 -1.13 -27.14 16 16 C 0.11 2.07 6.27 86.38 0.54 2.61 16 17 C -0.62 -5.41 5.95 71.98 0.43 -4.98 16 18 S 2.42 31.55 4.66 -56.49 -0.26 31.28 16 19 O -0.98 -21.43 18.10 -127.37 -2.30 -23.73 16 20 O -0.97 -20.16 18.10 -127.37 -2.31 -22.47 16 21 C -0.56 -2.66 6.09 71.98 0.44 -2.22 16 22 C -0.18 -1.77 5.74 -10.79 -0.06 -1.84 16 23 C -0.18 -1.48 10.18 30.62 0.31 -1.17 16 24 C -0.16 -1.00 10.25 30.62 0.31 -0.69 16 25 H 0.08 2.01 8.06 -2.39 -0.02 1.99 16 26 H 0.07 2.50 8.07 -2.39 -0.02 2.48 16 27 H 0.07 2.32 7.05 -2.39 -0.02 2.30 16 28 H 0.06 2.34 7.51 -2.38 -0.02 2.32 16 29 H 0.04 1.76 6.66 -2.39 -0.02 1.75 16 30 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 31 H 0.43 7.37 8.66 -96.75 -0.84 6.53 16 32 H 0.08 1.79 7.79 -2.39 -0.02 1.77 16 33 H 0.09 1.59 8.06 -2.38 -0.02 1.57 16 34 H 0.18 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.17 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.17 -0.20 7.87 -2.39 -0.02 -0.21 16 37 H 0.17 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.10 1.27 8.06 -2.38 -0.02 1.25 16 39 H 0.11 0.64 8.03 -2.38 -0.02 0.62 16 40 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.12 0.38 8.14 -2.38 -0.02 0.36 16 Total: -1.00 -94.13 377.56 -5.64 -99.76 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.15 Total: 10.58 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: 4.41 Total: -24.18 kcal Atomic # 7 Polarization: -125.49 SS G_CDS: -2.59 Total: -128.08 kcal Atomic # 8 Polarization: -128.94 SS G_CDS: -8.88 Total: -137.82 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.88 Total: 44.45 kcal Atomic # 16 Polarization: 135.89 SS G_CDS: -0.61 Total: 135.28 kcal Total: -94.13 -5.64 -99.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765234657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.309 kcal (2) G-P(sol) polarization free energy of solvation -94.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds