Wall clock time and date at job start Sat Apr 11 2020 05:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 S 1.65605 * 120.00142 * 2 1 4 4 O 1.42103 * 106.40127 * 311.46215 * 3 2 1 5 5 O 1.42095 * 106.40106 * 178.54318 * 3 2 1 6 6 C 1.76201 * 107.21569 * 65.00015 * 3 2 1 7 7 C 1.38359 * 119.45178 * 90.00320 * 6 3 2 8 8 C 1.38344 * 119.30869 * 179.97438 * 7 6 3 9 9 C 1.40078 * 118.28280 * 359.97438 * 8 7 6 10 10 C 1.47724 * 120.56447 * 180.02562 * 9 8 7 11 11 O 1.21464 * 119.99676 * 354.81493 * 10 9 8 12 12 O 1.34712 * 119.99799 * 174.81160 * 10 9 8 13 13 C 1.45198 * 116.99809 * 183.71701 * 12 10 9 14 14 C 1.52999 * 109.47041 * 176.79086 * 13 12 10 15 15 C 1.50698 * 115.54914 * 306.73479 * 14 13 12 16 16 H 1.07999 * 119.99890 * 144.10519 * 15 14 13 17 17 C 1.37872 * 119.99960 * 324.10211 * 15 14 13 18 18 N 1.31510 * 120.00357 * 349.50390 * 17 15 14 19 19 Si 1.86805 * 119.99980 * 169.50307 * 17 15 14 20 20 H 1.48500 * 109.47123 * 90.00225 * 19 17 15 21 21 H 1.48498 * 109.47174 * 210.00246 * 19 17 15 22 22 H 1.48502 * 109.46984 * 330.00231 * 19 17 15 23 23 C 1.52998 * 117.49732 * 161.06398 * 14 13 12 24 24 C 1.53001 * 117.49857 * 92.40617 * 14 13 12 25 25 C 1.39572 * 118.87057 * 0.27633 * 9 8 7 26 26 N 1.31689 * 120.56025 * 359.44962 * 25 9 8 27 27 H 1.08994 * 109.47416 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47053 * 300.00002 * 1 2 3 29 29 H 1.09001 * 109.47415 * 59.99850 * 1 2 3 30 30 H 0.96994 * 119.99865 * 180.02562 * 2 1 3 31 31 H 1.08007 * 120.34809 * 0.02562 * 7 6 3 32 32 H 1.08003 * 120.86104 * 179.97438 * 8 7 6 33 33 H 1.09006 * 109.46819 * 296.79228 * 13 12 10 34 34 H 1.09002 * 109.47092 * 56.78671 * 13 12 10 35 35 H 0.96998 * 120.00524 * 185.04219 * 18 17 15 36 36 H 1.09000 * 117.50101 * 0.02562 * 23 14 13 37 37 H 1.09007 * 117.49845 * 145.01612 * 23 14 13 38 38 H 1.09002 * 117.49573 * 214.97881 * 24 14 13 39 39 H 1.09003 * 117.49935 * 359.97438 * 24 14 13 40 40 H 1.08000 * 119.72039 * 179.72495 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7120 2.2330 -1.0216 5 8 3.6737 1.1002 0.0347 6 6 1.9378 2.2414 1.5254 7 6 2.7463 2.0072 2.6235 8 6 2.4650 2.6430 3.8195 9 6 1.3629 3.5062 3.8691 10 6 1.0170 4.2117 5.1201 11 8 1.6314 3.9747 6.1407 12 8 0.0202 5.1178 5.1288 13 6 -0.2102 5.8322 6.3717 14 6 -1.3189 6.8667 6.1673 15 6 -1.1164 7.8174 5.0157 16 1 -1.9639 8.1499 4.4346 17 6 0.1506 8.2627 4.7040 18 7 1.1504 8.0292 5.5258 19 14 0.4472 9.1979 3.1143 20 1 0.2643 10.6520 3.3539 21 1 1.8319 8.9444 2.6418 22 1 -0.5191 8.7408 2.0835 23 6 -2.0190 7.4077 7.4155 24 6 -2.7526 6.4379 6.4858 25 6 0.5941 3.6844 2.7180 26 7 0.9060 3.0601 1.6012 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.9499 -0.8400 -0.0004 31 1 3.5887 1.3356 2.5475 32 1 3.0792 2.4781 4.6924 33 1 -0.5102 5.1263 7.1463 34 1 0.7065 6.3374 6.6758 35 1 2.0260 8.4046 5.3434 36 1 -1.6896 7.0271 8.3822 37 1 -2.3335 8.4514 7.4036 38 1 -3.5495 6.8438 5.8626 39 1 -2.9061 5.4187 6.8406 40 1 -0.2613 4.3433 2.7420 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770875816.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:21 Heat of formation + Delta-G solvation = -109.439697 kcal Electronic energy + Delta-G solvation = -27231.594330 eV Core-core repulsion = 23139.139997 eV Total energy + Delta-G solvation = -4092.454333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.96108 -40.74122 -38.60492 -38.49253 -37.11342 -36.96669 -35.97822 -34.21156 -34.02973 -33.17917 -28.74774 -27.52050 -26.90919 -26.26604 -25.07115 -23.04234 -22.44045 -21.14838 -20.92749 -19.60448 -19.05226 -18.84436 -18.63581 -17.87883 -17.41540 -17.36266 -16.97474 -16.57337 -16.10836 -15.75613 -15.67333 -15.45668 -15.06113 -14.82227 -14.54269 -14.36950 -13.93719 -13.86856 -13.83565 -13.57306 -13.36679 -13.26762 -12.90626 -12.80790 -12.71214 -12.55038 -12.39667 -12.13912 -12.01655 -11.54035 -11.41707 -11.35548 -11.10557 -11.01473 -10.86609 -10.68556 -10.60768 -10.08877 -8.11828 -6.20638 -1.25312 -0.82964 -0.18107 1.13812 1.36167 1.42260 1.49666 1.59103 1.85903 2.23632 2.37762 2.57629 2.75213 2.98767 3.36636 3.45678 3.50465 3.62984 3.70042 3.79529 4.18280 4.19934 4.21977 4.33786 4.45147 4.57146 4.64650 4.69083 4.74505 4.83798 4.92502 4.94689 5.01467 5.06730 5.17669 5.38127 5.51529 5.58711 5.79726 6.08189 6.19157 6.30854 6.63700 6.79559 7.41769 8.87869 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014757 B = 0.003255 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.986392 B = 8600.394391 C = 9172.871527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -1.095 6.095 3 S 2.729 3.271 4 O -0.965 6.965 5 O -0.961 6.961 6 C -0.436 4.436 7 C -0.083 4.083 8 C -0.026 4.026 9 C -0.127 4.127 10 C 0.500 3.500 11 O -0.531 6.531 12 O -0.327 6.327 13 C 0.125 3.875 14 C 0.008 3.992 15 C -0.494 4.494 16 H 0.058 0.942 17 C 0.038 3.962 18 N -0.907 5.907 19 Si 0.938 3.062 20 H -0.274 1.274 21 H -0.291 1.291 22 H -0.265 1.265 23 C -0.185 4.185 24 C -0.184 4.184 25 C 0.133 3.867 26 N -0.412 5.412 27 H 0.117 0.883 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.436 0.564 31 H 0.200 0.800 32 H 0.176 0.824 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.259 0.741 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.802 -19.457 -7.649 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.861 5.861 3 S 2.810 3.190 4 O -0.954 6.954 5 O -0.950 6.950 6 C -0.653 4.653 7 C -0.104 4.104 8 C -0.052 4.052 9 C -0.131 4.131 10 C 0.344 3.656 11 O -0.423 6.423 12 O -0.241 6.241 13 C 0.052 3.948 14 C 0.008 3.992 15 C -0.531 4.531 16 H 0.076 0.924 17 C -0.162 4.162 18 N -0.545 5.545 19 Si 0.764 3.236 20 H -0.199 1.199 21 H -0.217 1.217 22 H -0.190 1.190 23 C -0.223 4.223 24 C -0.221 4.221 25 C -0.027 4.027 26 N -0.121 5.121 27 H 0.136 0.864 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.274 0.726 31 H 0.217 0.783 32 H 0.194 0.806 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.040 -18.887 -8.735 20.835 hybrid contribution 0.627 0.801 1.302 1.652 sum 1.667 -18.086 -7.432 19.625 Atomic orbital electron populations 1.21754 0.76908 1.06222 1.02288 1.54900 1.17009 1.23333 1.90886 1.01349 0.72371 0.72960 0.72347 1.93581 1.78762 1.69604 1.53499 1.93609 1.31265 1.83614 1.86527 1.34336 1.00195 1.08475 1.22252 1.22325 0.99286 0.98298 0.90503 1.22150 0.92965 0.90112 1.00022 1.20633 0.99513 0.99680 0.93255 1.21227 0.78052 0.78049 0.88284 1.90755 1.51699 1.64656 1.35201 1.86511 1.47955 1.48025 1.41632 1.22649 1.01295 0.90622 0.80247 1.18989 0.88849 0.95554 0.95846 1.20669 0.92874 1.26577 1.13027 0.92410 1.25454 0.95754 0.96475 0.98550 1.69908 1.02065 1.45211 1.37361 0.85850 0.77250 0.79204 0.81298 1.19928 1.21667 1.18970 1.22973 1.06321 0.98416 0.94590 1.23001 0.96582 0.98604 1.03909 1.23614 0.98169 0.94589 0.86373 1.67950 1.14193 1.04017 1.25941 0.86412 0.92469 0.91456 0.72609 0.78267 0.80648 0.93925 0.89779 0.93100 0.89944 0.90063 0.89618 0.89118 0.79961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 11.14 127.77 1.42 2.18 16 2 N -1.10 -12.36 6.19 -206.55 -1.28 -13.64 16 3 S 2.73 55.29 5.80 -56.49 -0.33 54.96 16 4 O -0.97 -27.41 17.57 -128.00 -2.25 -29.66 16 5 O -0.96 -21.28 17.24 -128.00 -2.21 -23.49 16 6 C -0.44 -10.42 6.84 84.71 0.58 -9.84 16 7 C -0.08 -1.71 9.54 22.32 0.21 -1.49 16 8 C -0.03 -0.65 9.72 22.74 0.22 -0.43 16 9 C -0.13 -4.14 5.89 -20.00 -0.12 -4.26 16 10 C 0.50 20.18 7.89 70.33 0.56 20.74 16 11 O -0.53 -23.03 16.22 19.95 0.32 -22.71 16 12 O -0.33 -14.72 9.15 -56.22 -0.51 -15.23 16 13 C 0.12 5.89 4.55 71.98 0.33 6.22 16 14 C 0.01 0.38 2.12 -52.93 -0.11 0.27 16 15 C -0.49 -25.90 8.75 25.60 0.22 -25.67 16 16 H 0.06 3.01 7.84 -2.91 -0.02 2.99 16 17 C 0.04 2.01 5.19 84.65 0.44 2.45 16 18 N -0.91 -50.05 10.80 21.44 0.23 -49.82 16 19 Si 0.94 42.96 29.55 68.60 2.03 44.99 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 C -0.19 -7.71 9.96 30.62 0.30 -7.41 16 24 C -0.18 -7.23 9.92 30.62 0.30 -6.93 16 25 C 0.13 4.22 10.79 85.04 0.92 5.13 16 26 N -0.41 -12.04 10.09 -192.18 -1.94 -13.98 16 27 H 0.12 0.42 8.14 -2.39 -0.02 0.41 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.81 8.10 -2.39 -0.02 0.79 16 30 H 0.44 2.21 8.96 -96.75 -0.87 1.34 16 31 H 0.20 2.47 7.59 -2.91 -0.02 2.45 16 32 H 0.18 3.79 7.75 -2.91 -0.02 3.77 16 33 H 0.04 1.85 8.08 -2.38 -0.02 1.83 16 34 H 0.08 4.50 6.05 -2.39 -0.01 4.48 16 35 H 0.26 13.96 8.32 -92.71 -0.77 13.19 16 36 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.08 3.41 8.14 -2.38 -0.02 3.39 16 38 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 39 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 40 H 0.18 5.84 7.64 -2.91 -0.02 5.82 16 Total: -1.00 -71.98 365.39 -0.43 -72.41 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.22 Total: 15.21 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 5.28 Total: -19.04 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -2.98 Total: -77.43 kcal Atomic # 8 Polarization: -86.44 SS G_CDS: -4.65 Total: -91.09 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: 55.29 SS G_CDS: -0.33 Total: 54.96 kcal Total: -71.98 -0.43 -72.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770875816.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.032 kcal (2) G-P(sol) polarization free energy of solvation -71.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds