Wall clock time and date at job start Sat Apr 11 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34776 * 120.00035 * 2 1 4 4 O 1.21558 * 119.99832 * 0.02562 * 3 2 1 5 5 C 1.47858 * 120.00205 * 179.97438 * 3 2 1 6 6 C 1.39706 * 120.07306 * 359.97438 * 5 3 2 7 7 C 1.38050 * 120.15023 * 179.97438 * 6 5 3 8 8 C 1.38106 * 120.29501 * 359.97438 * 7 6 5 9 9 C 1.39668 * 120.14068 * 0.02562 * 8 7 6 10 10 C 1.47860 * 120.07255 * 179.97438 * 9 8 7 11 11 O 1.21550 * 120.00325 * 180.02562 * 10 9 8 12 12 N 1.34778 * 120.00102 * 359.97438 * 10 9 8 13 13 S 1.65599 * 120.00250 * 180.02562 * 12 10 9 14 14 O 1.42105 * 104.27655 * 308.93058 * 13 12 10 15 15 O 1.42101 * 104.27764 * 181.07495 * 13 12 10 16 16 C 1.81395 * 104.44748 * 65.00363 * 13 12 10 17 17 C 1.52999 * 109.46986 * 180.02562 * 16 13 12 18 18 C 1.50700 * 109.47535 * 180.02562 * 17 16 13 19 19 H 1.08006 * 119.99840 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00463 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00062 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00103 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47443 * 59.99483 * 22 20 18 24 24 H 1.48505 * 109.47343 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47001 * 299.99442 * 22 20 18 26 26 C 1.39293 * 120.07620 * 180.23100 * 5 3 2 27 27 H 1.09005 * 109.47079 * 300.00085 * 1 2 3 28 28 H 1.09000 * 109.46781 * 59.99863 * 1 2 3 29 29 H 1.08993 * 109.47140 * 179.97438 * 1 2 3 30 30 H 0.96999 * 120.00129 * 179.97438 * 2 1 3 31 31 H 1.08000 * 119.92621 * 359.97438 * 6 5 3 32 32 H 1.07996 * 119.85749 * 180.02562 * 7 6 5 33 33 H 1.07992 * 119.93333 * 180.02562 * 8 7 6 34 34 H 0.97001 * 119.99746 * 0.02562 * 12 10 9 35 35 H 1.09003 * 109.47393 * 299.99669 * 16 13 12 36 36 H 1.08994 * 109.47678 * 60.00285 * 16 13 12 37 37 H 1.09004 * 109.47080 * 299.99725 * 17 16 13 38 38 H 1.09005 * 109.47285 * 59.99790 * 17 16 13 39 39 H 0.96996 * 119.99792 * 180.02562 * 21 20 18 40 40 H 1.07998 * 120.14606 * 359.97438 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6175 1.1672 0.0006 6 6 4.3176 -0.0417 0.0017 7 6 5.6981 -0.0436 0.0017 8 6 6.3964 1.1480 0.0001 9 6 5.7088 2.3637 -0.0010 10 6 6.4579 3.6385 -0.0022 11 8 5.8583 4.6958 -0.0027 12 7 7.8057 3.6282 -0.0016 13 16 8.6446 5.0560 -0.0023 14 8 8.0765 5.7958 -1.0743 15 8 10.0093 4.6605 -0.0273 16 6 8.2334 5.8233 1.5891 17 6 8.9562 7.1664 1.7096 18 6 8.6151 7.8037 3.0319 19 1 7.9489 7.3012 3.7177 20 6 9.1525 9.0286 3.3659 21 7 9.9632 9.6408 2.5307 22 14 8.7290 9.8188 5.0047 23 1 9.1578 8.9253 6.1106 24 1 9.4307 11.1224 5.1218 25 1 7.2623 10.0368 5.0848 26 6 4.3155 2.3726 0.0054 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.9500 -0.8400 0.0004 31 1 3.7776 -0.9771 0.0025 32 1 6.2345 -0.9809 0.0021 33 1 7.4762 1.1397 -0.0004 34 1 8.2842 2.7845 -0.0009 35 1 7.1568 5.9840 1.6476 36 1 8.5474 5.1672 2.4008 37 1 10.0328 7.0061 1.6510 38 1 8.6417 7.8224 0.8978 39 1 10.3416 10.5024 2.7659 40 1 3.7791 3.3100 0.0084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776116721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:29 Heat of formation + Delta-G solvation = -118.894381 kcal Electronic energy + Delta-G solvation = -26307.751191 eV Core-core repulsion = 22214.886873 eV Total energy + Delta-G solvation = -4092.864318 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.96616 -40.00562 -38.32972 -36.71586 -35.64327 -35.15429 -34.67842 -33.88788 -31.93743 -31.60512 -31.16950 -27.47737 -25.63663 -24.96189 -23.74194 -21.94733 -21.66546 -20.83986 -19.60005 -19.11915 -17.73556 -17.26011 -16.73339 -16.59042 -16.32395 -15.87082 -15.65069 -15.36070 -15.18295 -14.93884 -14.76992 -14.53699 -14.30663 -14.10764 -13.58651 -13.43004 -12.85359 -12.81417 -12.55528 -12.49176 -12.35667 -11.88434 -11.80574 -11.73656 -11.63376 -11.05994 -11.00308 -10.91959 -10.56698 -10.41291 -10.38543 -10.30429 -9.73893 -9.70412 -9.58511 -9.49269 -9.18320 -8.47652 -6.10238 -4.15677 0.07625 0.46257 0.56956 2.01203 2.55149 2.64335 2.74470 3.30378 3.34771 3.37127 3.39268 3.83805 4.06645 4.09496 4.23954 4.39326 4.42026 4.52209 4.61221 4.73020 4.77842 4.89441 5.03800 5.05790 5.25008 5.34724 5.36950 5.57912 5.66970 5.69042 5.72009 5.74476 5.85009 6.19192 6.46021 6.56640 6.94174 7.29240 7.35801 7.36621 7.73335 7.82685 8.18389 8.86970 9.48769 11.00818 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014286 B = 0.002571 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.525800 B =10887.411503 C =12162.190981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.733 5.733 3 C 0.558 3.442 4 O -0.524 6.524 5 C -0.145 4.145 6 C -0.059 4.059 7 C -0.132 4.132 8 C -0.055 4.055 9 C -0.143 4.143 10 C 0.579 3.421 11 O -0.477 6.477 12 N -1.056 6.056 13 S 2.566 3.434 14 O -0.935 6.935 15 O -0.952 6.952 16 C -0.575 4.575 17 C 0.030 3.970 18 C -0.519 4.519 19 H 0.062 0.938 20 C 0.058 3.942 21 N -0.891 5.891 22 Si 0.902 3.098 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.005 3.995 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.401 0.599 31 H 0.132 0.868 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.426 0.574 35 H 0.132 0.868 36 H 0.122 0.878 37 H 0.034 0.966 38 H 0.037 0.963 39 H 0.266 0.734 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.573 -28.401 -4.977 31.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.385 5.385 3 C 0.345 3.655 4 O -0.401 6.401 5 C -0.149 4.149 6 C -0.078 4.078 7 C -0.150 4.150 8 C -0.074 4.074 9 C -0.148 4.148 10 C 0.366 3.634 11 O -0.348 6.348 12 N -0.817 5.817 13 S 2.666 3.334 14 O -0.925 6.925 15 O -0.943 6.943 16 C -0.710 4.710 17 C -0.009 4.009 18 C -0.559 4.559 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.529 5.529 22 Si 0.729 3.271 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.015 4.015 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.236 0.764 31 H 0.150 0.850 32 H 0.158 0.842 33 H 0.155 0.845 34 H 0.262 0.738 35 H 0.150 0.850 36 H 0.140 0.860 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.845 -26.427 -5.772 29.945 hybrid contribution 0.052 -0.614 1.416 1.544 sum -12.793 -27.040 -4.356 30.229 Atomic orbital electron populations 1.21586 0.78869 1.02429 1.02790 1.45677 1.08071 1.08421 1.76378 1.18216 0.87009 0.83916 0.76381 1.90844 1.69686 1.31007 1.48538 1.19854 0.93075 0.94122 1.07814 1.21508 0.94767 0.96922 0.94565 1.21064 0.93825 0.98428 1.01655 1.21608 1.00594 0.91557 0.93598 1.19841 0.94075 0.93009 1.07849 1.18074 0.81269 0.89757 0.74305 1.91017 1.67744 1.31608 1.44465 1.55404 1.16015 1.29385 1.80875 1.06765 0.73715 0.73349 0.79577 1.93607 1.77972 1.69455 1.51464 1.93592 1.31673 1.80823 1.88205 1.30341 1.12284 1.11935 1.16399 1.18994 0.95289 0.86555 1.00098 1.20937 1.29271 1.04105 1.01582 0.91998 1.25062 0.94881 0.96981 0.97548 1.69944 1.30937 1.16040 1.35929 0.86500 0.78723 0.78502 0.83377 1.20098 1.21072 1.19999 1.21483 0.92260 0.99008 0.88709 0.91866 0.91895 0.90434 0.76444 0.85029 0.84193 0.84516 0.73836 0.84952 0.85955 0.94731 0.94517 0.92457 0.82662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.43 10.70 59.85 0.64 1.07 16 2 N -0.73 -4.28 5.66 -68.04 -0.39 -4.67 16 3 C 0.56 5.56 7.77 -12.32 -0.10 5.46 16 4 O -0.52 -7.58 16.34 5.31 0.09 -7.49 16 5 C -0.15 -1.28 5.87 -105.02 -0.62 -1.90 16 6 C -0.06 -0.30 9.54 -39.10 -0.37 -0.68 16 7 C -0.13 -0.63 10.02 -39.70 -0.40 -1.03 16 8 C -0.05 -0.37 9.54 -39.10 -0.37 -0.74 16 9 C -0.14 -1.52 5.87 -105.02 -0.62 -2.13 16 10 C 0.58 8.13 7.51 -12.32 -0.09 8.04 16 11 O -0.48 -8.68 14.44 -11.80 -0.17 -8.85 16 12 N -1.06 -13.46 5.55 30.53 0.17 -13.29 16 13 S 2.57 46.47 5.11 -107.50 -0.55 45.92 16 14 O -0.93 -20.58 17.04 -64.79 -1.10 -21.68 16 15 O -0.95 -18.49 18.08 -57.54 -1.04 -19.53 16 16 C -0.57 -11.47 5.82 37.16 0.22 -11.26 16 17 C 0.03 0.78 4.98 -27.88 -0.14 0.64 16 18 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 19 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 22 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.01 0.06 9.14 -38.78 -0.35 -0.30 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.40 0.95 6.85 -40.82 -0.28 0.67 16 31 H 0.13 0.19 6.39 -52.49 -0.34 -0.14 16 32 H 0.14 0.25 8.06 -52.49 -0.42 -0.17 16 33 H 0.14 0.55 6.39 -52.49 -0.34 0.21 16 34 H 0.43 3.48 6.81 -34.47 -0.23 3.25 16 35 H 0.13 2.62 7.19 -51.92 -0.37 2.25 16 36 H 0.12 2.08 8.14 -51.93 -0.42 1.66 16 37 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.16 2.08 7.23 -52.49 -0.38 1.70 16 LS Contribution 361.51 15.07 5.45 5.45 Total: -1.00 -40.83 361.51 -8.88 -49.71 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -4.44 Total: 0.09 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -2.61 Total: -16.21 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.52 Total: -43.99 kcal Atomic # 8 Polarization: -55.32 SS G_CDS: -2.23 Total: -57.55 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 46.47 SS G_CDS: -0.55 Total: 45.92 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -40.83 -8.88 -49.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776116721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.189 kcal (2) G-P(sol) polarization free energy of solvation -40.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds