Wall clock time and date at job start Sat Apr 11 2020 05:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34776 * 120.00035 * 2 1 4 4 O 1.21558 * 119.99832 * 0.02562 * 3 2 1 5 5 C 1.47858 * 120.00205 * 179.97438 * 3 2 1 6 6 C 1.39706 * 120.07306 * 359.97438 * 5 3 2 7 7 C 1.38050 * 120.15023 * 179.97438 * 6 5 3 8 8 C 1.38106 * 120.29501 * 359.97438 * 7 6 5 9 9 C 1.39668 * 120.14068 * 0.02562 * 8 7 6 10 10 C 1.47860 * 120.07255 * 179.97438 * 9 8 7 11 11 O 1.21550 * 120.00325 * 180.02562 * 10 9 8 12 12 N 1.34778 * 120.00102 * 359.97438 * 10 9 8 13 13 S 1.65599 * 120.00250 * 180.02562 * 12 10 9 14 14 O 1.42105 * 104.27655 * 308.93058 * 13 12 10 15 15 O 1.42101 * 104.27764 * 181.07495 * 13 12 10 16 16 C 1.81395 * 104.44748 * 65.00363 * 13 12 10 17 17 C 1.52999 * 109.46986 * 180.02562 * 16 13 12 18 18 C 1.50700 * 109.47535 * 180.02562 * 17 16 13 19 19 H 1.08006 * 119.99840 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00463 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00062 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00103 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47443 * 59.99483 * 22 20 18 24 24 H 1.48505 * 109.47343 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47001 * 299.99442 * 22 20 18 26 26 C 1.39293 * 120.07620 * 180.23100 * 5 3 2 27 27 H 1.09005 * 109.47079 * 300.00085 * 1 2 3 28 28 H 1.09000 * 109.46781 * 59.99863 * 1 2 3 29 29 H 1.08993 * 109.47140 * 179.97438 * 1 2 3 30 30 H 0.96999 * 120.00129 * 179.97438 * 2 1 3 31 31 H 1.08000 * 119.92621 * 359.97438 * 6 5 3 32 32 H 1.07996 * 119.85749 * 180.02562 * 7 6 5 33 33 H 1.07992 * 119.93333 * 180.02562 * 8 7 6 34 34 H 0.97001 * 119.99746 * 0.02562 * 12 10 9 35 35 H 1.09003 * 109.47393 * 299.99669 * 16 13 12 36 36 H 1.08994 * 109.47678 * 60.00285 * 16 13 12 37 37 H 1.09004 * 109.47080 * 299.99725 * 17 16 13 38 38 H 1.09005 * 109.47285 * 59.99790 * 17 16 13 39 39 H 0.96996 * 119.99792 * 180.02562 * 21 20 18 40 40 H 1.07998 * 120.14606 * 359.97438 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6175 1.1672 0.0006 6 6 4.3176 -0.0417 0.0017 7 6 5.6981 -0.0436 0.0017 8 6 6.3964 1.1480 0.0001 9 6 5.7088 2.3637 -0.0010 10 6 6.4579 3.6385 -0.0022 11 8 5.8583 4.6958 -0.0027 12 7 7.8057 3.6282 -0.0016 13 16 8.6446 5.0560 -0.0023 14 8 8.0765 5.7958 -1.0743 15 8 10.0093 4.6605 -0.0273 16 6 8.2334 5.8233 1.5891 17 6 8.9562 7.1664 1.7096 18 6 8.6151 7.8037 3.0319 19 1 7.9489 7.3012 3.7177 20 6 9.1525 9.0286 3.3659 21 7 9.9632 9.6408 2.5307 22 14 8.7290 9.8188 5.0047 23 1 9.1578 8.9253 6.1106 24 1 9.4307 11.1224 5.1218 25 1 7.2623 10.0368 5.0848 26 6 4.3155 2.3726 0.0054 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.9500 -0.8400 0.0004 31 1 3.7776 -0.9771 0.0025 32 1 6.2345 -0.9809 0.0021 33 1 7.4762 1.1397 -0.0004 34 1 8.2842 2.7845 -0.0009 35 1 7.1568 5.9840 1.6476 36 1 8.5474 5.1672 2.4008 37 1 10.0328 7.0061 1.6510 38 1 8.6417 7.8224 0.8978 39 1 10.3416 10.5024 2.7659 40 1 3.7791 3.3100 0.0084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776116721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:28 Heat of formation + Delta-G solvation = -153.129195 kcal Electronic energy + Delta-G solvation = -26309.235724 eV Core-core repulsion = 22214.886873 eV Total energy + Delta-G solvation = -4094.348851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.83541 -40.92083 -39.09135 -38.30265 -37.27474 -36.01440 -35.84452 -35.80159 -33.20151 -32.60099 -32.21030 -28.01950 -27.66693 -25.79543 -24.43333 -23.63520 -22.68738 -21.64619 -20.86264 -20.07898 -19.28083 -18.45588 -18.12962 -17.40128 -17.34926 -16.98308 -16.69840 -16.57811 -16.43268 -16.24807 -16.21216 -15.52628 -15.22731 -14.90776 -14.82128 -14.50472 -14.15071 -13.87499 -13.77898 -13.49147 -13.40707 -13.30245 -13.21461 -12.96384 -12.93967 -12.86812 -12.56769 -12.37769 -12.26683 -12.09876 -11.79867 -11.60051 -11.21960 -11.11464 -10.66180 -10.40458 -10.19320 -10.03694 -8.28587 -6.42620 -1.06407 -0.55395 -0.13261 1.16551 1.34093 1.38609 1.42848 1.50857 1.80998 2.11428 2.35464 2.51346 2.74348 2.90863 3.04574 3.15480 3.56751 3.69370 3.76843 3.95233 3.97979 4.01782 4.03115 4.26836 4.38488 4.56531 4.61476 4.66954 4.85030 4.95844 5.05491 5.13202 5.18958 5.20559 5.22427 5.32110 5.57132 5.64872 5.70617 6.02386 6.29891 6.45276 6.69348 7.13062 7.27026 8.83576 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014286 B = 0.002571 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.525800 B =10887.411503 C =12162.190981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.711 5.711 3 C 0.550 3.450 4 O -0.586 6.586 5 C -0.159 4.159 6 C -0.034 4.034 7 C -0.116 4.116 8 C -0.045 4.045 9 C -0.162 4.162 10 C 0.578 3.422 11 O -0.530 6.530 12 N -1.031 6.031 13 S 2.604 3.396 14 O -0.977 6.977 15 O -0.962 6.962 16 C -0.580 4.580 17 C 0.023 3.977 18 C -0.542 4.542 19 H 0.072 0.928 20 C -0.003 4.003 21 N -0.931 5.931 22 Si 0.975 3.025 23 H -0.259 1.259 24 H -0.281 1.281 25 H -0.269 1.269 26 C -0.022 4.022 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.120 0.880 30 H 0.421 0.579 31 H 0.179 0.821 32 H 0.190 0.810 33 H 0.169 0.831 34 H 0.449 0.551 35 H 0.130 0.870 36 H 0.154 0.846 37 H 0.019 0.981 38 H 0.004 0.996 39 H 0.269 0.731 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.466 -33.475 -3.856 35.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.364 5.364 3 C 0.338 3.662 4 O -0.467 6.467 5 C -0.162 4.162 6 C -0.052 4.052 7 C -0.133 4.133 8 C -0.063 4.063 9 C -0.167 4.167 10 C 0.368 3.632 11 O -0.405 6.405 12 N -0.798 5.798 13 S 2.703 3.297 14 O -0.967 6.967 15 O -0.952 6.952 16 C -0.713 4.713 17 C -0.016 4.016 18 C -0.581 4.581 19 H 0.090 0.910 20 C -0.201 4.201 21 N -0.571 5.571 22 Si 0.798 3.202 23 H -0.184 1.184 24 H -0.206 1.206 25 H -0.194 1.194 26 C -0.042 4.042 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.138 0.862 30 H 0.260 0.740 31 H 0.196 0.804 32 H 0.207 0.793 33 H 0.187 0.813 34 H 0.291 0.709 35 H 0.148 0.852 36 H 0.172 0.828 37 H 0.037 0.963 38 H 0.022 0.978 39 H 0.077 0.923 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.708 -31.593 -4.637 34.367 hybrid contribution -0.038 0.750 1.006 1.255 sum -12.746 -30.843 -3.631 33.570 Atomic orbital electron populations 1.21744 0.78202 1.04759 1.01487 1.45560 1.08567 1.08052 1.74191 1.18573 0.87724 0.84146 0.75775 1.90814 1.70872 1.33363 1.51692 1.19834 0.92486 0.94728 1.09147 1.22038 0.95398 0.96831 0.90944 1.21641 0.93561 0.99300 0.98806 1.22044 1.02272 0.90489 0.91536 1.19552 0.93341 0.92566 1.11289 1.18740 0.81144 0.90634 0.72698 1.90997 1.68566 1.33842 1.47055 1.54746 1.15673 1.28964 1.80422 1.05308 0.73089 0.73593 0.77756 1.93556 1.78833 1.71600 1.52746 1.93571 1.32512 1.81221 1.87910 1.30252 1.11461 1.09889 1.19713 1.18829 0.94959 0.89271 0.98528 1.21437 1.29325 1.04778 1.02582 0.90954 1.26112 0.94605 0.97682 1.01743 1.70085 1.32194 1.16578 1.38207 0.85351 0.78608 0.77630 0.78583 1.18361 1.20591 1.19367 1.21287 0.92928 0.98826 0.91194 0.93279 0.93263 0.86159 0.73988 0.80361 0.79311 0.81329 0.70917 0.85161 0.82761 0.96254 0.97763 0.92255 0.86787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 10.70 127.77 1.37 2.05 16 2 N -0.71 -6.74 5.66 -487.45 -2.76 -9.50 16 3 C 0.55 10.94 7.77 86.79 0.67 11.62 16 4 O -0.59 -18.42 16.34 -3.90 -0.06 -18.49 16 5 C -0.16 -2.62 5.87 -20.12 -0.12 -2.74 16 6 C -0.03 -0.18 9.54 22.58 0.22 0.04 16 7 C -0.12 -0.39 10.02 22.19 0.22 -0.17 16 8 C -0.04 -0.42 9.54 22.58 0.22 -0.20 16 9 C -0.16 -3.34 5.87 -20.12 -0.12 -3.46 16 10 C 0.58 16.56 7.51 86.79 0.65 17.22 16 11 O -0.53 -20.77 14.44 12.50 0.18 -20.59 16 12 N -1.03 -25.38 5.55 -175.59 -0.98 -26.35 16 13 S 2.60 95.88 5.11 -56.49 -0.29 95.60 16 14 O -0.98 -44.99 17.04 -120.72 -2.06 -47.05 16 15 O -0.96 -36.89 18.08 -127.65 -2.31 -39.20 16 16 C -0.58 -23.80 5.82 71.98 0.42 -23.38 16 17 C 0.02 1.26 4.98 29.85 0.15 1.41 16 18 C -0.54 -31.32 9.11 25.60 0.23 -31.09 16 19 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 20 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 21 N -0.93 -57.78 13.29 21.45 0.28 -57.50 16 22 Si 0.98 44.74 29.54 68.60 2.03 46.76 16 23 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 26 C -0.02 -0.53 9.14 22.79 0.21 -0.32 16 27 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.42 0.13 6.85 -92.71 -0.64 -0.51 16 31 H 0.18 -0.75 6.39 -2.91 -0.02 -0.77 16 32 H 0.19 -1.00 8.06 -2.91 -0.02 -1.02 16 33 H 0.17 0.41 6.39 -2.91 -0.02 0.40 16 34 H 0.45 6.10 6.81 -96.74 -0.66 5.44 16 35 H 0.13 5.41 7.19 -2.39 -0.02 5.40 16 36 H 0.15 5.18 8.14 -2.39 -0.02 5.16 16 37 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 39 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 40 H 0.11 3.59 7.23 -2.91 -0.02 3.57 16 Total: -1.00 -98.36 361.51 -1.56 -99.92 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -0.18 Total: 5.12 kcal Atomic # 6 Polarization: -33.31 SS G_CDS: 4.58 Total: -28.73 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -3.45 Total: -93.35 kcal Atomic # 8 Polarization: -121.07 SS G_CDS: -4.25 Total: -125.32 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 95.88 SS G_CDS: -0.29 Total: 95.60 kcal Total: -98.36 -1.56 -99.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776116721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.205 kcal (2) G-P(sol) polarization free energy of solvation -98.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds