Wall clock time and date at job start Sat Apr 11 2020 05:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21277 * 120.00103 * 2 1 4 4 N 1.34782 * 119.99711 * 179.97438 * 2 1 3 5 5 C 1.39437 * 119.99678 * 185.28008 * 4 2 1 6 6 C 1.39130 * 119.92865 * 33.53877 * 5 4 2 7 7 C 1.37674 * 120.07612 * 180.27610 * 6 5 4 8 8 C 1.39752 * 119.92173 * 359.52075 * 7 6 5 9 9 C 1.47602 * 120.07259 * 180.23429 * 8 7 6 10 10 O 1.21582 * 119.99703 * 180.25201 * 9 8 7 11 11 N 1.34780 * 119.99774 * 0.24501 * 9 8 7 12 12 S 1.65597 * 119.99561 * 180.02562 * 11 9 8 13 13 O 1.42098 * 104.27415 * 181.07698 * 12 11 9 14 14 O 1.42100 * 104.27908 * 308.93378 * 12 11 9 15 15 C 1.81397 * 104.45202 * 65.00353 * 12 11 9 16 16 C 1.52996 * 109.47652 * 179.97438 * 15 12 11 17 17 C 1.50698 * 109.47394 * 179.97438 * 16 15 12 18 18 H 1.08001 * 119.99952 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00055 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00163 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00232 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47268 * 90.00172 * 21 19 17 23 23 H 1.48497 * 109.47311 * 210.00402 * 21 19 17 24 24 H 1.48504 * 109.47033 * 330.00227 * 21 19 17 25 25 C 1.39750 * 119.85540 * 0.48141 * 8 7 6 26 26 C 1.37670 * 119.92215 * 359.75042 * 25 8 7 27 27 H 1.08998 * 109.47126 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47151 * 300.00548 * 1 2 3 29 29 H 1.08995 * 109.46832 * 60.00506 * 1 2 3 30 30 H 0.96998 * 120.00470 * 5.28025 * 4 2 1 31 31 H 1.07998 * 119.96654 * 0.02562 * 6 5 4 32 32 H 1.08000 * 120.04203 * 179.72964 * 7 6 5 33 33 H 0.96997 * 119.99959 * 0.02562 * 11 9 8 34 34 H 1.09002 * 109.46875 * 300.00301 * 15 12 11 35 35 H 1.09009 * 109.47050 * 59.99387 * 15 12 11 36 36 H 1.08994 * 109.47334 * 300.00392 * 16 15 12 37 37 H 1.09009 * 109.46471 * 60.00098 * 16 15 12 38 38 H 0.96997 * 120.00658 * 179.97438 * 20 19 17 39 39 H 1.07996 * 120.03893 * 179.73230 * 25 8 7 40 40 H 1.08003 * 119.96370 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5708 -1.1698 0.1117 6 6 4.2078 -0.1974 0.8761 7 6 5.5803 -0.1936 0.9833 8 6 6.3332 -1.1740 0.3313 9 6 7.8046 -1.1761 0.4482 10 8 8.4585 -2.0270 -0.1234 11 7 8.4231 -0.2349 1.1884 12 16 10.0740 -0.2369 1.3190 13 8 10.3589 0.8586 2.1779 14 8 10.3938 -1.5683 1.6990 15 6 10.6616 0.1033 -0.3631 16 6 12.1913 0.1280 -0.3739 17 6 12.6794 0.4100 -1.7715 18 1 11.9695 0.5574 -2.5719 19 6 14.0322 0.4800 -2.0282 20 7 14.8967 0.3000 -1.0536 21 14 14.6373 0.8303 -3.7604 22 1 14.7781 2.2965 -3.9485 23 1 15.9543 0.1760 -3.9665 24 1 13.6603 0.2967 -4.7434 25 6 5.6902 -2.1492 -0.4359 26 6 4.3177 -2.1443 -0.5427 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.6990 -2.0056 -0.0764 31 1 3.6252 0.5577 1.3828 32 1 6.0745 0.5640 1.5734 33 1 7.9013 0.4437 1.6446 34 1 10.3056 -0.6761 -1.0369 35 1 10.2805 1.0701 -0.6925 36 1 12.5468 0.9076 0.2998 37 1 12.5725 -0.8386 -0.0444 38 1 15.8484 0.3488 -1.2342 39 1 6.2694 -2.9056 -0.9445 40 1 3.8201 -2.8980 -1.1351 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776119114.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:32 Heat of formation + Delta-G solvation = -120.396817 kcal Electronic energy + Delta-G solvation = -26231.844583 eV Core-core repulsion = 22138.915114 eV Total energy + Delta-G solvation = -4092.929469 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.16136 -40.20888 -38.40111 -36.66793 -35.58872 -35.34221 -34.49722 -33.86510 -31.49108 -31.35534 -31.14736 -29.29340 -25.60533 -24.58298 -23.37947 -21.95314 -21.55500 -20.84732 -19.46814 -18.57117 -18.23915 -17.61073 -17.37661 -16.51339 -16.15663 -15.77657 -15.57553 -15.12854 -15.00863 -14.86428 -14.67401 -14.52289 -14.19392 -13.89084 -13.48680 -13.39749 -13.24429 -12.93493 -12.70256 -12.51385 -12.30510 -11.77722 -11.73230 -11.68461 -11.58367 -11.05648 -10.97254 -10.95928 -10.81513 -10.53698 -10.39764 -10.33872 -10.23861 -9.68044 -9.41360 -9.15116 -8.66185 -8.46850 -6.09137 -4.14326 0.31320 0.54083 0.99462 1.88568 2.39046 2.49654 2.75197 3.29480 3.35422 3.39032 3.46735 4.00960 4.08048 4.21054 4.37187 4.40513 4.51956 4.54050 4.66890 4.77037 4.82409 4.90352 5.02194 5.03196 5.20367 5.26124 5.53984 5.64497 5.70215 5.76504 5.78252 5.94165 5.95711 6.46205 6.50094 6.67384 6.74120 7.31879 7.38542 7.47424 7.48160 7.84133 8.20115 8.88607 9.49974 11.01952 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018032 B = 0.002312 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.423301 B =12106.050153 C =12721.447783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.510 3.490 3 O -0.520 6.520 4 N -0.675 5.675 5 C 0.173 3.827 6 C -0.132 4.132 7 C -0.058 4.058 8 C -0.156 4.156 9 C 0.582 3.418 10 O -0.487 6.487 11 N -1.057 6.057 12 S 2.567 3.433 13 O -0.954 6.954 14 O -0.937 6.937 15 C -0.575 4.575 16 C 0.029 3.971 17 C -0.518 4.518 18 H 0.062 0.938 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.902 3.098 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.031 4.031 26 C -0.155 4.155 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.414 0.586 31 H 0.142 0.858 32 H 0.134 0.866 33 H 0.426 0.574 34 H 0.132 0.868 35 H 0.122 0.878 36 H 0.034 0.966 37 H 0.036 0.964 38 H 0.265 0.735 39 H 0.146 0.854 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.200 -3.498 3.283 32.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.298 3.702 3 O -0.394 6.394 4 N -0.320 5.320 5 C 0.078 3.922 6 C -0.152 4.152 7 C -0.077 4.077 8 C -0.162 4.162 9 C 0.370 3.630 10 O -0.359 6.359 11 N -0.818 5.818 12 S 2.668 3.332 13 O -0.944 6.944 14 O -0.927 6.927 15 C -0.710 4.710 16 C -0.010 4.010 17 C -0.557 4.557 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.529 5.529 21 Si 0.729 3.271 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.050 4.050 26 C -0.176 4.176 27 H 0.098 0.902 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.251 0.749 31 H 0.159 0.841 32 H 0.152 0.848 33 H 0.262 0.738 34 H 0.150 0.850 35 H 0.140 0.860 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.164 0.836 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -30.754 -3.522 3.771 31.184 hybrid contribution -0.353 0.308 -1.288 1.370 sum -31.107 -3.214 2.483 31.371 Atomic orbital electron populations 1.21870 0.90343 1.04736 1.05974 1.21107 0.91063 0.83048 0.74956 1.90787 1.70440 1.31133 1.47047 1.43695 1.05258 1.10300 1.72779 1.17976 0.82929 0.96424 0.94838 1.21041 0.94425 1.00054 0.99648 1.21228 0.93580 0.96406 0.96530 1.19854 0.92266 0.99651 1.04388 1.18093 0.88581 0.79564 0.76801 1.90984 1.66682 1.34928 1.43343 1.55373 1.30933 1.37960 1.57503 1.06681 0.72085 0.74860 0.79623 1.93590 1.81401 1.55162 1.64273 1.93596 1.80521 1.36738 1.81841 1.30341 1.11595 1.10906 1.18158 1.18995 0.82648 0.99121 1.00217 1.20979 0.91786 1.49747 0.93234 0.91958 1.25068 0.96814 0.95041 0.97616 1.69954 1.02149 1.48957 1.31798 0.86440 0.78240 0.78410 0.84023 1.20485 1.21010 1.19738 1.21146 0.93555 0.96208 0.94127 1.20875 0.93734 1.01080 1.01897 0.90184 0.88085 0.88169 0.74917 0.84068 0.84805 0.73786 0.84993 0.85987 0.94739 0.94536 0.92538 0.83580 0.84671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.32 10.39 36.01 0.37 0.05 16 2 C 0.51 3.18 7.67 -10.98 -0.08 3.10 16 3 O -0.52 -5.68 14.78 5.56 0.08 -5.60 16 4 N -0.67 -3.34 5.32 -9.86 -0.05 -3.39 16 5 C 0.17 1.37 6.27 -83.74 -0.53 0.84 16 6 C -0.13 -1.21 8.63 -39.46 -0.34 -1.55 16 7 C -0.06 -0.55 9.53 -39.22 -0.37 -0.92 16 8 C -0.16 -1.77 5.88 -104.95 -0.62 -2.39 16 9 C 0.58 8.44 7.50 -12.44 -0.09 8.35 16 10 O -0.49 -8.75 14.44 -11.84 -0.17 -8.92 16 11 N -1.06 -14.50 5.55 30.47 0.17 -14.33 16 12 S 2.57 48.01 5.11 -107.50 -0.55 47.46 16 13 O -0.95 -19.25 18.08 -57.54 -1.04 -20.29 16 14 O -0.94 -20.89 17.04 -64.79 -1.10 -21.99 16 15 C -0.58 -11.73 5.82 37.16 0.22 -11.52 16 16 C 0.03 0.77 4.98 -27.89 -0.14 0.64 16 17 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 18 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 21 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 C -0.03 -0.31 9.58 -39.22 -0.38 -0.68 16 26 C -0.16 -1.16 9.94 -39.46 -0.39 -1.55 16 27 H 0.08 -0.06 7.92 -51.93 -0.41 -0.47 16 28 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.10 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.41 0.52 8.66 -40.82 -0.35 0.17 16 31 H 0.14 1.32 6.41 -52.49 -0.34 0.98 16 32 H 0.13 0.95 6.39 -52.49 -0.34 0.61 16 33 H 0.43 4.15 6.81 -34.47 -0.23 3.91 16 34 H 0.13 2.64 7.19 -51.92 -0.37 2.27 16 35 H 0.12 2.16 8.14 -51.92 -0.42 1.74 16 36 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.04 1.02 8.14 -51.92 -0.42 0.59 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.15 1.41 7.64 -52.49 -0.40 1.01 16 40 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 LS Contribution 361.05 15.07 5.44 5.44 Total: -1.00 -40.50 361.05 -8.79 -49.30 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -4.52 Total: 0.89 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -2.76 Total: -19.09 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.85 Total: -43.85 kcal Atomic # 8 Polarization: -54.56 SS G_CDS: -2.23 Total: -56.80 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 48.01 SS G_CDS: -0.55 Total: 47.46 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -40.50 -8.79 -49.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776119114.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.100 kcal (2) G-P(sol) polarization free energy of solvation -40.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds