Wall clock time and date at job start Sat Apr 11 2020 05:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21277 * 120.00103 * 2 1 4 4 N 1.34782 * 119.99711 * 179.97438 * 2 1 3 5 5 C 1.39437 * 119.99678 * 185.28008 * 4 2 1 6 6 C 1.39130 * 119.92865 * 33.53877 * 5 4 2 7 7 C 1.37674 * 120.07612 * 180.27610 * 6 5 4 8 8 C 1.39752 * 119.92173 * 359.52075 * 7 6 5 9 9 C 1.47602 * 120.07259 * 180.23429 * 8 7 6 10 10 O 1.21582 * 119.99703 * 180.25201 * 9 8 7 11 11 N 1.34780 * 119.99774 * 0.24501 * 9 8 7 12 12 S 1.65597 * 119.99561 * 180.02562 * 11 9 8 13 13 O 1.42098 * 104.27415 * 181.07698 * 12 11 9 14 14 O 1.42100 * 104.27908 * 308.93378 * 12 11 9 15 15 C 1.81397 * 104.45202 * 65.00353 * 12 11 9 16 16 C 1.52996 * 109.47652 * 179.97438 * 15 12 11 17 17 C 1.50698 * 109.47394 * 179.97438 * 16 15 12 18 18 H 1.08001 * 119.99952 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00055 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00163 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00232 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47268 * 90.00172 * 21 19 17 23 23 H 1.48497 * 109.47311 * 210.00402 * 21 19 17 24 24 H 1.48504 * 109.47033 * 330.00227 * 21 19 17 25 25 C 1.39750 * 119.85540 * 0.48141 * 8 7 6 26 26 C 1.37670 * 119.92215 * 359.75042 * 25 8 7 27 27 H 1.08998 * 109.47126 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47151 * 300.00548 * 1 2 3 29 29 H 1.08995 * 109.46832 * 60.00506 * 1 2 3 30 30 H 0.96998 * 120.00470 * 5.28025 * 4 2 1 31 31 H 1.07998 * 119.96654 * 0.02562 * 6 5 4 32 32 H 1.08000 * 120.04203 * 179.72964 * 7 6 5 33 33 H 0.96997 * 119.99959 * 0.02562 * 11 9 8 34 34 H 1.09002 * 109.46875 * 300.00301 * 15 12 11 35 35 H 1.09009 * 109.47050 * 59.99387 * 15 12 11 36 36 H 1.08994 * 109.47334 * 300.00392 * 16 15 12 37 37 H 1.09009 * 109.46471 * 60.00098 * 16 15 12 38 38 H 0.96997 * 120.00658 * 179.97438 * 20 19 17 39 39 H 1.07996 * 120.03893 * 179.73230 * 25 8 7 40 40 H 1.08003 * 119.96370 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5708 -1.1698 0.1117 6 6 4.2078 -0.1974 0.8761 7 6 5.5803 -0.1936 0.9833 8 6 6.3332 -1.1740 0.3313 9 6 7.8046 -1.1761 0.4482 10 8 8.4585 -2.0270 -0.1234 11 7 8.4231 -0.2349 1.1884 12 16 10.0740 -0.2369 1.3190 13 8 10.3589 0.8586 2.1779 14 8 10.3938 -1.5683 1.6990 15 6 10.6616 0.1033 -0.3631 16 6 12.1913 0.1280 -0.3739 17 6 12.6794 0.4100 -1.7715 18 1 11.9695 0.5574 -2.5719 19 6 14.0322 0.4800 -2.0282 20 7 14.8967 0.3000 -1.0536 21 14 14.6373 0.8303 -3.7604 22 1 14.7781 2.2965 -3.9485 23 1 15.9543 0.1760 -3.9665 24 1 13.6603 0.2967 -4.7434 25 6 5.6902 -2.1492 -0.4359 26 6 4.3177 -2.1443 -0.5427 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.6990 -2.0056 -0.0764 31 1 3.6252 0.5577 1.3828 32 1 6.0745 0.5640 1.5734 33 1 7.9013 0.4437 1.6446 34 1 10.3056 -0.6761 -1.0369 35 1 10.2805 1.0701 -0.6925 36 1 12.5468 0.9076 0.2998 37 1 12.5725 -0.8386 -0.0444 38 1 15.8484 0.3488 -1.2342 39 1 6.2694 -2.9056 -0.9445 40 1 3.8201 -2.8980 -1.1351 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776119114.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:32 Heat of formation + Delta-G solvation = -152.507136 kcal Electronic energy + Delta-G solvation = -26233.236991 eV Core-core repulsion = 22138.915114 eV Total energy + Delta-G solvation = -4094.321877 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.87395 -41.15555 -39.18458 -38.29638 -37.25601 -36.10513 -35.92861 -35.60803 -33.19007 -32.09934 -31.95095 -29.78408 -27.66016 -25.44772 -24.07213 -23.66354 -22.70751 -21.47324 -20.81316 -19.74066 -19.13502 -18.85684 -18.37788 -17.91567 -17.37787 -16.93824 -16.72633 -16.54406 -16.31333 -16.22277 -15.67779 -15.38815 -15.20784 -14.84603 -14.57485 -14.49448 -14.00404 -13.87624 -13.82373 -13.72579 -13.39473 -13.28337 -13.23983 -13.03928 -12.95549 -12.85656 -12.39969 -12.33302 -12.27317 -12.06075 -11.77689 -11.59856 -11.52630 -11.10248 -11.00578 -10.65856 -10.09506 -9.32334 -8.27692 -6.41681 -1.03786 -0.47820 0.31336 1.16585 1.36974 1.39578 1.42032 1.53306 1.64462 2.03450 2.36292 2.52460 2.73417 2.98846 3.05490 3.22550 3.65422 3.75247 3.87161 3.88405 4.00209 4.02553 4.19933 4.30243 4.44490 4.53274 4.67464 4.67919 4.88817 5.00440 5.10514 5.17248 5.17929 5.21628 5.24244 5.32093 5.63033 5.66005 5.82378 6.03235 6.35589 6.37280 6.70471 7.06651 7.27905 8.84650 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018032 B = 0.002312 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.423301 B =12106.050153 C =12721.447783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.505 3.495 3 O -0.572 6.572 4 N -0.660 5.660 5 C 0.179 3.821 6 C -0.145 4.145 7 C -0.055 4.055 8 C -0.177 4.177 9 C 0.582 3.418 10 O -0.527 6.527 11 N -1.038 6.038 12 S 2.603 3.397 13 O -0.968 6.968 14 O -0.974 6.974 15 C -0.578 4.578 16 C 0.023 3.977 17 C -0.540 4.540 18 H 0.073 0.927 19 C -0.004 4.004 20 N -0.932 5.932 21 Si 0.976 3.024 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.261 1.261 25 C -0.038 4.038 26 C -0.146 4.146 27 H 0.112 0.888 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.434 0.566 31 H 0.139 0.861 32 H 0.152 0.848 33 H 0.445 0.555 34 H 0.135 0.865 35 H 0.150 0.850 36 H 0.016 0.984 37 H 0.007 0.993 38 H 0.268 0.732 39 H 0.144 0.856 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.530 -3.497 2.033 35.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.297 3.703 3 O -0.450 6.450 4 N -0.308 5.308 5 C 0.082 3.918 6 C -0.165 4.165 7 C -0.074 4.074 8 C -0.183 4.183 9 C 0.372 3.628 10 O -0.402 6.402 11 N -0.804 5.804 12 S 2.702 3.298 13 O -0.958 6.958 14 O -0.964 6.964 15 C -0.712 4.712 16 C -0.016 4.016 17 C -0.579 4.579 18 H 0.091 0.909 19 C -0.202 4.202 20 N -0.571 5.571 21 Si 0.800 3.200 22 H -0.193 1.193 23 H -0.206 1.206 24 H -0.185 1.185 25 C -0.058 4.058 26 C -0.166 4.166 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.275 0.725 31 H 0.157 0.843 32 H 0.170 0.830 33 H 0.286 0.714 34 H 0.153 0.847 35 H 0.168 0.832 36 H 0.035 0.965 37 H 0.025 0.975 38 H 0.077 0.923 39 H 0.162 0.838 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -34.132 -3.528 2.529 34.407 hybrid contribution 0.483 0.289 -0.851 1.020 sum -33.649 -3.239 1.679 33.846 Atomic orbital electron populations 1.21918 0.86677 1.07118 1.06387 1.21959 0.92733 0.82309 0.73344 1.90770 1.71749 1.33006 1.49441 1.43704 1.04110 1.11269 1.71670 1.18173 0.84459 0.95594 0.93556 1.21141 0.94343 1.00649 1.00383 1.21394 0.93799 0.96149 0.96096 1.19661 0.89965 1.01703 1.06939 1.18643 0.89902 0.78551 0.75660 1.90964 1.67637 1.36496 1.45125 1.54819 1.29097 1.38729 1.57750 1.05324 0.72846 0.73525 0.78119 1.93564 1.82536 1.55481 1.64258 1.93547 1.82091 1.38748 1.82060 1.30242 1.07722 1.12790 1.20397 1.18838 0.86739 0.96793 0.99252 1.21458 0.92533 1.49576 0.94363 0.90902 1.26124 0.97095 0.94631 1.02381 1.70093 1.02600 1.50030 1.34368 0.85276 0.77702 0.78718 0.78334 1.19265 1.20630 1.18531 1.21293 0.94744 0.95835 0.93923 1.21121 0.92650 1.01391 1.01420 0.86880 0.87509 0.87715 0.72493 0.84334 0.83008 0.71377 0.84683 0.83161 0.96538 0.97483 0.92281 0.83850 0.81284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.09 10.39 71.24 0.74 0.65 16 2 C 0.51 5.14 7.67 87.66 0.67 5.82 16 3 O -0.57 -11.89 14.78 -3.02 -0.04 -11.93 16 4 N -0.66 -4.53 5.32 -303.49 -1.61 -6.15 16 5 C 0.18 2.39 6.27 38.36 0.24 2.63 16 6 C -0.14 -2.46 8.63 22.35 0.19 -2.26 16 7 C -0.06 -0.97 9.53 22.50 0.21 -0.76 16 8 C -0.18 -3.87 5.88 -20.07 -0.12 -3.99 16 9 C 0.58 16.82 7.50 86.71 0.65 17.47 16 10 O -0.53 -19.32 14.44 12.41 0.18 -19.14 16 11 N -1.04 -28.03 5.55 -175.76 -0.98 -29.01 16 12 S 2.60 98.90 5.11 -56.49 -0.29 98.62 16 13 O -0.97 -39.24 18.08 -127.65 -2.31 -41.55 16 14 O -0.97 -44.82 17.04 -120.72 -2.06 -46.88 16 15 C -0.58 -23.99 5.82 71.98 0.42 -23.57 16 16 C 0.02 1.25 4.98 29.85 0.15 1.40 16 17 C -0.54 -31.15 9.11 25.60 0.23 -30.92 16 18 H 0.07 3.93 7.74 -2.91 -0.02 3.90 16 19 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 20 N -0.93 -57.70 13.29 21.45 0.28 -57.42 16 21 Si 0.98 44.58 29.54 68.60 2.03 46.61 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 25 C -0.04 -0.71 9.58 22.50 0.22 -0.50 16 26 C -0.15 -1.80 9.94 22.35 0.22 -1.57 16 27 H 0.11 -0.68 7.92 -2.39 -0.02 -0.70 16 28 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.43 -0.66 8.66 -92.71 -0.80 -1.46 16 31 H 0.14 2.46 6.41 -2.91 -0.02 2.44 16 32 H 0.15 1.92 6.39 -2.91 -0.02 1.90 16 33 H 0.45 8.14 6.81 -96.75 -0.66 7.49 16 34 H 0.13 5.52 7.19 -2.39 -0.02 5.51 16 35 H 0.15 5.25 8.14 -2.39 -0.02 5.23 16 36 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 38 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.14 2.70 7.64 -2.91 -0.02 2.68 16 40 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 Total: -1.00 -90.93 361.05 -0.85 -91.78 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -0.35 Total: 10.43 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 4.29 Total: -35.37 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -2.31 Total: -92.57 kcal Atomic # 8 Polarization: -115.27 SS G_CDS: -4.23 Total: -119.50 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: 98.90 SS G_CDS: -0.29 Total: 98.62 kcal Total: -90.93 -0.85 -91.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776119114.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.725 kcal (2) G-P(sol) polarization free energy of solvation -90.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds