Wall clock time and date at job start Sat Apr 11 2020 05:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39006 * 120.00210 * 2 1 4 4 C 1.39243 * 119.92635 * 5.77462 * 3 2 1 5 5 C 1.36575 * 120.20340 * 179.73481 * 4 3 2 6 6 C 1.39856 * 120.04943 * 0.52051 * 5 4 3 7 7 C 1.47379 * 120.07453 * 179.73360 * 6 5 4 8 8 O 1.21519 * 120.00114 * 179.71829 * 7 6 5 9 9 O 1.34762 * 120.00140 * 359.72651 * 7 6 5 10 10 C 1.45199 * 117.00280 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.47203 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46954 * 179.97438 * 11 10 9 13 13 S 1.81001 * 109.47015 * 179.97438 * 12 11 10 14 14 C 1.76197 * 100.00168 * 180.02562 * 13 12 11 15 15 H 1.08010 * 119.99674 * 359.97438 * 14 13 12 16 16 C 1.38794 * 120.00120 * 180.02562 * 14 13 12 17 17 N 1.31624 * 120.00136 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99753 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47258 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46720 * 120.00390 * 18 16 14 21 21 H 1.48500 * 109.47032 * 240.00063 * 18 16 14 22 22 C 1.39857 * 119.85172 * 359.45506 * 6 5 4 23 23 C 1.37643 * 119.79876 * 0.28267 * 22 6 5 24 24 N 1.48022 * 120.02475 * 179.97438 * 23 22 6 25 25 O 1.21799 * 119.99851 * 353.86838 * 24 23 22 26 26 O 1.21797 * 119.99745 * 173.87405 * 24 23 22 27 27 H 1.09003 * 109.47189 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46985 * 299.99961 * 1 2 3 29 29 H 1.09000 * 109.47343 * 59.99710 * 1 2 3 30 30 H 0.97002 * 119.99799 * 180.02562 * 2 1 3 31 31 H 1.08006 * 119.89585 * 359.97438 * 4 3 2 32 32 H 1.08004 * 119.97690 * 180.27132 * 5 4 3 33 33 H 1.09003 * 109.47171 * 59.99873 * 10 9 7 34 34 H 1.08995 * 109.47132 * 300.00082 * 10 9 7 35 35 H 1.08999 * 109.46696 * 300.00138 * 11 10 9 36 36 H 1.08993 * 109.46867 * 59.99994 * 11 10 9 37 37 H 1.08995 * 109.47266 * 300.00329 * 12 11 10 38 38 H 1.09003 * 109.46811 * 60.00038 * 12 11 10 39 39 H 0.97003 * 120.00305 * 179.97438 * 17 16 14 40 40 H 1.07997 * 120.09806 * 180.25395 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1601 1.2038 0.0000 4 6 1.4677 2.4057 0.1214 5 6 2.1454 3.5915 0.1275 6 6 3.5381 3.6028 0.0007 7 6 4.2694 4.8823 0.0013 8 8 5.4800 4.8903 -0.1038 9 8 3.5956 6.0435 0.1186 10 6 4.3808 7.2649 0.1122 11 6 3.4495 8.4706 0.2535 12 6 4.2770 9.7575 0.2473 13 16 3.1753 11.1840 0.4137 14 6 4.3577 12.4898 0.3773 15 1 5.4090 12.2636 0.2758 16 6 3.9384 13.8088 0.4801 17 7 2.6574 14.0843 0.6052 18 14 5.1921 15.1931 0.4422 19 1 6.5552 14.6225 0.2954 20 1 4.9049 16.0896 -0.7063 21 1 5.1127 15.9676 1.7067 22 6 4.2359 2.3968 -0.1208 23 6 3.5472 1.2051 -0.1208 24 7 4.2806 -0.0742 -0.2497 25 8 5.4789 -0.0699 -0.4676 26 8 3.6857 -1.1311 -0.1380 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.9500 -0.8401 -0.0004 31 1 0.3917 2.4001 0.2149 32 1 1.6050 4.5214 0.2263 33 1 4.9303 7.3386 -0.8263 34 1 5.0841 7.2490 0.9447 35 1 2.7465 8.4862 -0.5793 36 1 2.8998 8.3971 1.1917 37 1 4.9798 9.7416 1.0803 38 1 4.8271 9.8312 -0.6908 39 1 2.3643 15.0062 0.6774 40 1 5.3117 2.4007 -0.2148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805331429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:44 Heat of formation + Delta-G solvation = -65.599561 kcal Electronic energy + Delta-G solvation = -25270.378133 eV Core-core repulsion = 21179.824851 eV Total energy + Delta-G solvation = -4090.553282 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.70986 -40.88587 -39.79386 -37.40522 -36.79832 -36.10465 -33.61757 -32.67334 -32.47411 -31.04061 -27.59073 -27.19319 -26.20939 -25.46324 -23.92217 -22.95907 -21.57529 -21.36472 -19.64437 -19.10718 -18.40566 -17.97131 -17.61135 -17.37769 -16.85478 -16.70485 -16.57064 -15.27546 -15.08318 -14.88135 -14.84211 -14.73486 -14.50531 -13.78949 -13.52118 -13.39292 -12.99940 -12.89341 -12.80717 -12.38213 -12.15600 -11.91192 -11.61845 -11.45835 -11.40054 -11.21687 -11.10231 -11.04306 -10.95777 -10.80546 -10.65365 -10.36168 -10.27190 -9.66965 -9.11557 -8.57859 -8.39658 -6.60285 -6.28233 -3.99378 -0.49832 0.12750 0.88408 0.94759 2.06885 2.35237 2.46846 2.99537 3.18506 3.19729 3.27637 3.49460 3.66824 4.09270 4.16845 4.24214 4.30184 4.32366 4.47931 4.67655 4.90705 4.93531 4.99785 5.05079 5.08956 5.11738 5.26296 5.35970 5.43606 5.46493 5.60640 5.72133 5.83012 5.85962 6.08432 6.16123 6.32070 6.39371 6.61192 6.76808 7.25451 7.53392 7.56462 8.31973 9.18601 10.79966 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.028317 B = 0.001645 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.566235 B =17013.579031 C =17968.975413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.712 5.712 3 C 0.310 3.690 4 C -0.213 4.213 5 C 0.036 3.964 6 C -0.182 4.182 7 C 0.514 3.486 8 O -0.505 6.505 9 O -0.351 6.351 10 C 0.074 3.926 11 C -0.098 4.098 12 C -0.115 4.115 13 S -0.124 6.124 14 C -0.518 4.518 15 H 0.074 0.926 16 C 0.071 3.929 17 N -0.869 5.869 18 Si 0.920 3.080 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.279 1.279 22 C 0.057 3.943 23 C -0.142 4.142 24 N 0.054 4.946 25 O -0.146 6.146 26 O -0.205 6.205 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.423 0.577 31 H 0.154 0.846 32 H 0.160 0.840 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.267 0.733 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.210 -29.236 -1.013 29.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.348 5.348 3 C 0.194 3.806 4 C -0.235 4.235 5 C 0.017 3.983 6 C -0.186 4.186 7 C 0.359 3.641 8 O -0.394 6.394 9 O -0.267 6.267 10 C -0.001 4.001 11 C -0.136 4.136 12 C -0.264 4.264 13 S 0.104 5.896 14 C -0.666 4.666 15 H 0.093 0.907 16 C -0.138 4.138 17 N -0.505 5.505 18 Si 0.746 3.254 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.205 1.205 22 C 0.038 3.962 23 C -0.232 4.232 24 N 0.564 4.436 25 O -0.366 6.366 26 O -0.402 6.402 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.272 0.728 31 H 0.172 0.828 32 H 0.178 0.822 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.731 -28.601 -0.852 29.640 hybrid contribution 2.551 0.309 -0.173 2.576 sum -5.180 -28.292 -1.025 28.780 Atomic orbital electron populations 1.21922 0.78616 1.04166 1.02428 1.45936 1.07867 1.06964 1.73989 1.17846 0.87791 0.88832 0.86171 1.20523 1.01384 0.89321 1.12311 1.21442 0.92585 0.99329 0.84973 1.18689 0.93637 0.90213 1.16077 1.20570 0.85799 0.84370 0.73367 1.90884 1.14761 1.88051 1.45745 1.86483 1.42057 1.14973 1.83216 1.23343 0.94063 0.79770 1.02890 1.21293 0.97894 0.90182 1.04225 1.23182 1.02061 0.97681 1.03445 1.84632 1.12914 0.96094 1.95960 1.22742 0.94082 0.91811 1.57984 0.90750 1.25018 0.95983 0.98272 0.94496 1.70021 1.13868 1.19886 1.46715 0.86093 0.80622 0.80777 0.77925 1.19557 1.20534 1.20531 1.20835 1.02233 0.87957 0.85188 1.20248 0.90335 0.84325 1.28312 1.43311 1.01193 1.02003 0.97059 1.94586 0.96983 1.94080 1.50991 1.94126 1.68556 1.20102 1.57401 0.89405 0.91396 0.91457 0.72793 0.82799 0.82221 0.90883 0.90886 0.90285 0.90296 0.91671 0.91671 0.92286 0.81547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.15 9.96 59.85 0.60 0.74 16 2 N -0.71 -3.90 5.75 -65.40 -0.38 -4.27 16 3 C 0.31 2.18 6.63 -83.86 -0.56 1.62 16 4 C -0.21 -1.13 9.24 -39.81 -0.37 -1.50 16 5 C 0.04 0.24 9.56 -39.58 -0.38 -0.14 16 6 C -0.18 -1.69 5.88 -104.97 -0.62 -2.30 16 7 C 0.51 6.25 7.89 34.45 0.27 6.52 16 8 O -0.51 -7.53 16.13 -19.28 -0.31 -7.84 16 9 O -0.35 -4.29 9.46 -40.66 -0.38 -4.67 16 10 C 0.07 0.99 5.48 37.16 0.20 1.19 16 11 C -0.10 -1.47 5.60 -26.73 -0.15 -1.62 16 12 C -0.12 -2.20 5.67 37.16 0.21 -1.99 16 13 S -0.12 -3.14 21.44 -107.50 -2.30 -5.44 16 14 C -0.52 -14.56 9.50 30.94 0.29 -14.26 16 15 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 16 C 0.07 1.99 5.49 -17.43 -0.10 1.90 16 17 N -0.87 -25.49 13.22 55.49 0.73 -24.75 16 18 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 C 0.06 0.54 9.10 -39.19 -0.36 0.19 16 23 C -0.14 -1.30 6.85 -79.79 -0.55 -1.84 16 24 N 0.05 0.58 4.45 34.04 0.15 0.74 16 25 O -0.15 -1.77 18.46 -29.46 -0.54 -2.32 16 26 O -0.20 -2.13 15.71 -29.46 -0.46 -2.59 16 27 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 28 H 0.07 0.08 7.71 -51.93 -0.40 -0.32 16 29 H 0.07 0.09 8.12 -51.93 -0.42 -0.33 16 30 H 0.42 2.66 5.25 -41.26 -0.22 2.44 16 31 H 0.15 0.39 6.69 -52.48 -0.35 0.04 16 32 H 0.16 0.82 7.60 -52.48 -0.40 0.42 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 38 H 0.06 1.23 8.14 -51.91 -0.42 0.81 16 39 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.17 1.64 7.21 -52.49 -0.38 1.26 16 LS Contribution 368.01 15.07 5.55 5.55 Total: -1.00 -33.46 368.01 -9.14 -42.60 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -4.67 Total: -1.70 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -1.49 Total: -11.51 kcal Atomic # 7 Polarization: -28.80 SS G_CDS: 0.51 Total: -28.29 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -1.70 Total: -17.42 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -3.14 SS G_CDS: -2.30 Total: -5.44 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.46 -9.14 -42.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805331429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.000 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds