Wall clock time and date at job start Sat Apr 11 2020 05:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39006 * 120.00210 * 2 1 4 4 C 1.39243 * 119.92635 * 5.77462 * 3 2 1 5 5 C 1.36575 * 120.20340 * 179.73481 * 4 3 2 6 6 C 1.39856 * 120.04943 * 0.52051 * 5 4 3 7 7 C 1.47379 * 120.07453 * 179.73360 * 6 5 4 8 8 O 1.21519 * 120.00114 * 179.71829 * 7 6 5 9 9 O 1.34762 * 120.00140 * 359.72651 * 7 6 5 10 10 C 1.45199 * 117.00280 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.47203 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46954 * 179.97438 * 11 10 9 13 13 S 1.81001 * 109.47015 * 179.97438 * 12 11 10 14 14 C 1.76197 * 100.00168 * 180.02562 * 13 12 11 15 15 H 1.08010 * 119.99674 * 359.97438 * 14 13 12 16 16 C 1.38794 * 120.00120 * 180.02562 * 14 13 12 17 17 N 1.31624 * 120.00136 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99753 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47258 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46720 * 120.00390 * 18 16 14 21 21 H 1.48500 * 109.47032 * 240.00063 * 18 16 14 22 22 C 1.39857 * 119.85172 * 359.45506 * 6 5 4 23 23 C 1.37643 * 119.79876 * 0.28267 * 22 6 5 24 24 N 1.48022 * 120.02475 * 179.97438 * 23 22 6 25 25 O 1.21799 * 119.99851 * 353.86838 * 24 23 22 26 26 O 1.21797 * 119.99745 * 173.87405 * 24 23 22 27 27 H 1.09003 * 109.47189 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46985 * 299.99961 * 1 2 3 29 29 H 1.09000 * 109.47343 * 59.99710 * 1 2 3 30 30 H 0.97002 * 119.99799 * 180.02562 * 2 1 3 31 31 H 1.08006 * 119.89585 * 359.97438 * 4 3 2 32 32 H 1.08004 * 119.97690 * 180.27132 * 5 4 3 33 33 H 1.09003 * 109.47171 * 59.99873 * 10 9 7 34 34 H 1.08995 * 109.47132 * 300.00082 * 10 9 7 35 35 H 1.08999 * 109.46696 * 300.00138 * 11 10 9 36 36 H 1.08993 * 109.46867 * 59.99994 * 11 10 9 37 37 H 1.08995 * 109.47266 * 300.00329 * 12 11 10 38 38 H 1.09003 * 109.46811 * 60.00038 * 12 11 10 39 39 H 0.97003 * 120.00305 * 179.97438 * 17 16 14 40 40 H 1.07997 * 120.09806 * 180.25395 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1601 1.2038 0.0000 4 6 1.4677 2.4057 0.1214 5 6 2.1454 3.5915 0.1275 6 6 3.5381 3.6028 0.0007 7 6 4.2694 4.8823 0.0013 8 8 5.4800 4.8903 -0.1038 9 8 3.5956 6.0435 0.1186 10 6 4.3808 7.2649 0.1122 11 6 3.4495 8.4706 0.2535 12 6 4.2770 9.7575 0.2473 13 16 3.1753 11.1840 0.4137 14 6 4.3577 12.4898 0.3773 15 1 5.4090 12.2636 0.2758 16 6 3.9384 13.8088 0.4801 17 7 2.6574 14.0843 0.6052 18 14 5.1921 15.1931 0.4422 19 1 6.5552 14.6225 0.2954 20 1 4.9049 16.0896 -0.7063 21 1 5.1127 15.9676 1.7067 22 6 4.2359 2.3968 -0.1208 23 6 3.5472 1.2051 -0.1208 24 7 4.2806 -0.0742 -0.2497 25 8 5.4789 -0.0699 -0.4676 26 8 3.6857 -1.1311 -0.1380 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.9500 -0.8401 -0.0004 31 1 0.3917 2.4001 0.2149 32 1 1.6050 4.5214 0.2263 33 1 4.9303 7.3386 -0.8263 34 1 5.0841 7.2490 0.9447 35 1 2.7465 8.4862 -0.5793 36 1 2.8998 8.3971 1.1917 37 1 4.9798 9.7416 1.0803 38 1 4.8271 9.8312 -0.6908 39 1 2.3643 15.0062 0.6774 40 1 5.3117 2.4007 -0.2148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805331429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:43 Heat of formation + Delta-G solvation = -84.663732 kcal Electronic energy + Delta-G solvation = -25271.204817 eV Core-core repulsion = 21179.824851 eV Total energy + Delta-G solvation = -4091.379966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.47206 -41.75339 -40.50925 -38.17586 -37.78603 -36.71161 -34.90502 -34.57829 -33.31123 -31.61933 -28.44561 -27.95063 -27.70401 -26.85322 -24.63895 -23.62231 -22.72202 -22.27261 -20.47640 -19.88459 -19.54113 -19.00413 -18.74715 -18.24659 -17.75793 -17.75235 -17.14220 -16.89564 -16.19996 -16.02975 -15.59721 -15.58586 -15.31475 -15.06758 -14.42512 -14.28590 -14.04505 -13.79903 -13.75567 -13.21965 -13.21311 -13.04319 -12.96435 -12.69426 -12.60332 -12.46814 -12.39414 -12.39141 -12.12747 -11.84835 -11.62189 -11.49847 -11.45754 -11.15573 -10.85337 -10.34785 -9.08824 -8.66307 -8.38137 -6.13670 -1.22099 -0.55079 0.21246 0.23619 1.25639 1.26703 1.38632 1.39885 1.51797 1.82230 2.01190 2.27308 2.31800 2.96644 3.08552 3.27244 3.41573 3.62881 3.69024 3.72271 3.87988 3.99556 4.14953 4.22896 4.32153 4.34855 4.42045 4.57136 4.61747 4.71068 4.78279 4.89638 4.94445 5.04725 5.05069 5.12475 5.22220 5.36536 5.41006 5.69817 6.18353 6.19102 6.48348 6.57099 7.05068 8.71277 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.028317 B = 0.001645 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.566235 B =17013.579031 C =17968.975413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.704 5.704 3 C 0.313 3.687 4 C -0.194 4.194 5 C 0.044 3.956 6 C -0.193 4.193 7 C 0.516 3.484 8 O -0.541 6.541 9 O -0.344 6.344 10 C 0.081 3.919 11 C -0.084 4.084 12 C -0.094 4.094 13 S -0.180 6.180 14 C -0.541 4.541 15 H 0.073 0.927 16 C 0.017 3.983 17 N -0.905 5.905 18 Si 0.992 3.008 19 H -0.264 1.264 20 H -0.272 1.272 21 H -0.272 1.272 22 C 0.052 3.948 23 C -0.156 4.156 24 N 0.057 4.943 25 O -0.206 6.206 26 O -0.188 6.188 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.419 0.581 31 H 0.193 0.807 32 H 0.180 0.820 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.272 0.728 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.092 -29.927 -0.853 31.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.336 5.336 3 C 0.194 3.806 4 C -0.216 4.216 5 C 0.025 3.975 6 C -0.197 4.197 7 C 0.363 3.637 8 O -0.432 6.432 9 O -0.260 6.260 10 C 0.006 3.994 11 C -0.123 4.123 12 C -0.243 4.243 13 S 0.048 5.952 14 C -0.689 4.689 15 H 0.091 0.909 16 C -0.188 4.188 17 N -0.542 5.542 18 Si 0.815 3.185 19 H -0.188 1.188 20 H -0.197 1.197 21 H -0.197 1.197 22 C 0.032 3.968 23 C -0.248 4.248 24 N 0.560 4.440 25 O -0.411 6.411 26 O -0.392 6.392 27 H 0.122 0.878 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.267 0.733 31 H 0.210 0.790 32 H 0.198 0.802 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.541 -29.302 -0.712 30.825 hybrid contribution 2.915 0.326 -0.203 2.940 sum -6.627 -28.976 -0.915 29.738 Atomic orbital electron populations 1.22284 0.76076 1.05924 1.03855 1.46211 1.09555 1.06208 1.71665 1.18078 0.86894 0.90174 0.85493 1.20883 1.02895 0.87719 1.10103 1.21647 0.91109 1.00794 0.83989 1.18546 0.94796 0.88359 1.18035 1.21041 0.85563 0.84885 0.72214 1.90871 1.16357 1.88389 1.47626 1.86459 1.41556 1.14696 1.83262 1.23089 0.93488 0.79768 1.03077 1.21102 0.97546 0.88872 1.04743 1.23087 1.01145 0.96506 1.03577 1.84555 1.15614 0.98839 1.96171 1.23099 0.94445 0.93123 1.58217 0.90895 1.26021 0.98071 1.00951 0.93780 1.70138 1.15857 1.20719 1.47471 0.84991 0.78009 0.77232 0.78297 1.18840 1.19692 1.19687 1.20707 1.01722 0.88567 0.85833 1.20327 0.91222 0.83158 1.30085 1.43555 1.01083 1.02598 0.96724 1.94593 0.97939 1.94414 1.54154 1.94087 1.68303 1.20822 1.55977 0.87784 0.89646 0.90096 0.73313 0.78979 0.80228 0.90787 0.90782 0.89803 0.89811 0.91448 0.91453 0.91905 0.83172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.02 9.96 127.77 1.27 1.25 16 2 N -0.70 -5.53 5.75 -360.81 -2.07 -7.60 16 3 C 0.31 3.59 6.63 38.49 0.26 3.85 16 4 C -0.19 -1.30 9.24 22.12 0.20 -1.09 16 5 C 0.04 0.45 9.56 22.27 0.21 0.67 16 6 C -0.19 -3.42 5.88 -20.09 -0.12 -3.54 16 7 C 0.52 12.34 7.89 70.23 0.55 12.90 16 8 O -0.54 -16.52 16.13 19.77 0.32 -16.21 16 9 O -0.34 -7.90 9.46 -56.73 -0.54 -8.44 16 10 C 0.08 2.07 5.48 71.98 0.39 2.46 16 11 C -0.08 -2.43 5.60 30.60 0.17 -2.26 16 12 C -0.09 -3.56 5.67 71.98 0.41 -3.15 16 13 S -0.18 -9.20 21.44 -56.49 -1.21 -10.41 16 14 C -0.54 -30.61 9.50 67.95 0.65 -29.96 16 15 H 0.07 4.00 7.80 -2.91 -0.02 3.97 16 16 C 0.02 0.95 5.49 84.86 0.47 1.41 16 17 N -0.91 -53.47 13.22 21.65 0.29 -53.19 16 18 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 19 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 C 0.05 1.00 9.10 22.52 0.20 1.21 16 23 C -0.16 -2.81 6.85 36.47 0.25 -2.56 16 24 N 0.06 1.26 4.45 -46.22 -0.21 1.06 16 25 O -0.21 -5.45 18.46 18.89 0.35 -5.10 16 26 O -0.19 -3.84 15.71 18.89 0.30 -3.54 16 27 H 0.10 -0.31 8.14 -2.39 -0.02 -0.33 16 28 H 0.09 -0.24 7.71 -2.38 -0.02 -0.26 16 29 H 0.08 -0.16 8.12 -2.39 -0.02 -0.18 16 30 H 0.42 4.30 5.25 -99.77 -0.52 3.77 16 31 H 0.19 -0.16 6.69 -2.91 -0.02 -0.18 16 32 H 0.18 1.14 7.60 -2.91 -0.02 1.12 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.07 2.51 8.14 -2.40 -0.02 2.49 16 38 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 40 H 0.15 3.33 7.21 -2.91 -0.02 3.31 16 Total: -1.00 -74.75 368.01 4.74 -70.01 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.57 Total: 6.86 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 4.92 Total: -18.81 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -1.99 Total: -59.73 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: 0.43 Total: -33.28 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -9.20 SS G_CDS: -1.21 Total: -10.41 kcal Total: -74.75 4.74 -70.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805331429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.659 kcal (2) G-P(sol) polarization free energy of solvation -74.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds