Wall clock time and date at job start Sat Apr 11 2020 05:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 S 1.65606 * 120.00128 * 2 1 4 4 O 1.42093 * 106.40174 * 311.46651 * 3 2 1 5 5 O 1.42095 * 106.39998 * 178.54127 * 3 2 1 6 6 C 1.76200 * 107.21343 * 65.00466 * 3 2 1 7 7 C 1.38363 * 119.45349 * 270.01774 * 6 3 2 8 8 C 1.38345 * 119.31009 * 179.70168 * 7 6 3 9 9 C 1.40075 * 118.28086 * 0.53816 * 8 7 6 10 10 C 1.47722 * 120.56373 * 179.73018 * 9 8 7 11 11 O 1.21464 * 120.00144 * 3.51302 * 10 9 8 12 12 O 1.34711 * 119.99665 * 183.50238 * 10 9 8 13 13 C 1.45201 * 116.99710 * 183.32026 * 12 10 9 14 14 C 1.50703 * 112.84947 * 295.52683 * 13 12 10 15 15 H 1.08006 * 120.00036 * 117.66643 * 14 13 12 16 16 C 1.37876 * 120.00150 * 297.67537 * 14 13 12 17 17 N 1.31513 * 120.00488 * 173.35857 * 16 14 13 18 18 Si 1.86799 * 119.99713 * 353.35393 * 16 14 13 19 19 H 1.48495 * 109.47400 * 270.04415 * 18 16 14 20 20 H 1.48497 * 109.47254 * 30.04761 * 18 16 14 21 21 H 1.48505 * 109.47052 * 150.04648 * 18 16 14 22 22 C 1.53782 * 113.61809 * 66.72113 * 13 12 10 23 23 C 1.53953 * 87.01762 * 89.22907 * 22 13 12 24 24 C 1.53779 * 87.11286 * 25.36432 * 23 22 13 25 25 C 1.39570 * 118.87377 * 359.46818 * 9 8 7 26 26 N 1.31692 * 120.55618 * 0.26866 * 25 9 8 27 27 H 1.08997 * 109.47032 * 299.99557 * 1 2 3 28 28 H 1.09000 * 109.46872 * 59.99825 * 1 2 3 29 29 H 1.08994 * 109.47048 * 179.97438 * 1 2 3 30 30 H 0.97000 * 120.00306 * 180.02562 * 2 1 3 31 31 H 1.08004 * 120.34742 * 359.97438 * 7 6 3 32 32 H 1.07998 * 120.86254 * 180.28360 * 8 7 6 33 33 H 0.96989 * 120.00261 * 179.97438 * 17 16 14 34 34 H 1.08998 * 113.61987 * 203.75208 * 22 13 12 35 35 H 1.09002 * 113.61111 * 334.65794 * 22 13 12 36 36 H 1.08993 * 113.54121 * 270.81380 * 23 22 13 37 37 H 1.09005 * 113.74266 * 139.94256 * 23 22 13 38 38 H 1.08998 * 113.62057 * 220.09073 * 24 23 22 39 39 H 1.09001 * 113.69240 * 89.19125 * 24 23 22 40 40 H 1.07995 * 119.72434 * 180.29157 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4342 0.0000 4 8 1.7120 2.2330 -1.0214 5 8 3.6738 1.1002 0.0347 6 6 1.9379 2.2413 1.5254 7 6 0.8549 3.0987 1.6055 8 6 0.5751 3.7261 2.8063 9 6 1.4148 3.4734 3.8986 10 6 1.1662 4.1210 5.2028 11 8 0.1912 4.8295 5.3531 12 8 2.0208 3.9255 6.2256 13 6 1.6751 4.5323 7.4987 14 6 1.6623 6.0383 7.4448 15 1 0.7460 6.5777 7.6345 16 6 2.8202 6.7276 7.1532 17 7 2.7834 8.0303 6.9772 18 14 4.4413 5.8109 7.0080 19 1 5.1010 5.7583 8.3374 20 1 4.1874 4.4293 6.5264 21 1 5.3244 6.5164 6.0448 22 6 0.4186 3.9284 8.1480 23 6 1.3557 2.9137 8.8279 24 6 2.4690 3.9651 8.6873 25 6 2.4872 2.5951 3.7353 26 7 2.7088 2.0180 2.5725 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.9501 -0.8400 -0.0004 31 1 0.2318 3.2730 0.7407 32 1 -0.2666 4.3966 2.8982 33 1 3.5981 8.5152 6.7724 34 1 -0.0778 4.6012 8.8473 35 1 -0.2689 3.4777 7.4323 36 1 1.5269 2.0147 8.2360 37 1 1.0896 2.6952 9.8622 38 1 3.4344 3.5441 8.4064 39 1 2.5355 4.6486 9.5338 40 1 3.1405 2.3867 4.5696 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810856291.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:48 Heat of formation + Delta-G solvation = -79.994162 kcal Electronic energy + Delta-G solvation = -27694.948718 eV Core-core repulsion = 23603.771240 eV Total energy + Delta-G solvation = -4091.177478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.65079 -39.55297 -37.52797 -37.36416 -36.14245 -35.40330 -34.65545 -32.81810 -32.50524 -31.94979 -27.20166 -26.41570 -25.52245 -25.09953 -23.96342 -22.55805 -21.16993 -20.04455 -18.71610 -18.60810 -17.93804 -17.66010 -17.01145 -16.71457 -16.33025 -15.59236 -15.19093 -15.13075 -14.94372 -14.67702 -14.41759 -14.21170 -13.94373 -13.82058 -13.28782 -13.22768 -13.06829 -12.77652 -12.38595 -12.29205 -11.98466 -11.97317 -11.69323 -11.65228 -11.58202 -11.18320 -10.63395 -10.41137 -10.27897 -10.22043 -10.14782 -10.06914 -9.99844 -9.72284 -9.61789 -9.12200 -8.88223 -8.54869 -6.28488 -4.34627 -0.13758 0.15089 0.91044 2.48965 2.83433 3.11196 3.22177 3.33855 3.36768 3.43314 3.68920 3.79827 4.30518 4.43156 4.58802 4.61349 4.66587 4.77868 4.93594 5.00583 5.06432 5.22098 5.30521 5.31881 5.32415 5.43883 5.53384 5.69743 5.82861 6.06013 6.15515 6.17588 6.45053 6.47869 6.50372 6.59842 6.83678 7.03411 7.25360 7.30385 7.54531 8.22969 8.57332 8.81072 9.32986 10.81966 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.003331 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.955838 B = 8403.604921 C = 8790.122290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.115 6.115 3 S 2.709 3.291 4 O -0.946 6.946 5 O -0.935 6.935 6 C -0.438 4.438 7 C -0.097 4.097 8 C -0.035 4.035 9 C -0.102 4.102 10 C 0.499 3.501 11 O -0.470 6.470 12 O -0.348 6.348 13 C 0.192 3.808 14 C -0.516 4.516 15 H 0.085 0.915 16 C 0.084 3.916 17 N -0.877 5.877 18 Si 0.860 3.140 19 H -0.274 1.274 20 H -0.237 1.237 21 H -0.290 1.290 22 C -0.138 4.138 23 C -0.145 4.145 24 C -0.126 4.126 25 C 0.129 3.871 26 N -0.397 5.397 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.422 0.578 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.268 0.732 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.911 -17.331 -10.511 20.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.877 5.877 3 S 2.792 3.208 4 O -0.935 6.935 5 O -0.924 6.924 6 C -0.656 4.656 7 C -0.118 4.118 8 C -0.062 4.062 9 C -0.106 4.106 10 C 0.339 3.661 11 O -0.357 6.357 12 O -0.266 6.266 13 C 0.158 3.842 14 C -0.553 4.553 15 H 0.103 0.897 16 C -0.121 4.121 17 N -0.513 5.513 18 Si 0.686 3.314 19 H -0.200 1.200 20 H -0.160 1.160 21 H -0.216 1.216 22 C -0.176 4.176 23 C -0.182 4.182 24 C -0.163 4.163 25 C -0.032 4.032 26 N -0.106 5.106 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.257 0.743 31 H 0.178 0.822 32 H 0.179 0.821 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.117 0.883 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.999 -17.017 -11.196 20.759 hybrid contribution 0.011 0.319 0.860 0.917 sum -3.988 -16.698 -10.336 20.039 Atomic orbital electron populations 1.21562 0.78294 1.04618 1.02194 1.55286 1.16281 1.24391 1.91721 1.01954 0.73121 0.72782 0.72916 1.93629 1.79086 1.68850 1.51948 1.93618 1.29946 1.82616 1.86237 1.33754 1.01661 1.11257 1.18957 1.21964 0.96082 0.94579 0.99193 1.21924 0.98028 0.95674 0.90541 1.21079 0.97280 0.97961 0.94266 1.20369 0.81967 0.79508 0.84213 1.90821 1.28242 1.33316 1.83299 1.86581 1.48536 1.70540 1.20917 1.21195 0.92784 0.93091 0.77086 1.21037 0.97744 0.87239 1.49240 0.89749 1.25037 0.99428 0.94682 0.92988 1.69931 1.28882 1.07433 1.45076 0.87139 0.83386 0.82266 0.78594 1.20008 1.16005 1.21635 1.23303 0.96893 0.97727 0.99648 1.22948 0.98096 0.97166 1.00026 1.23222 0.97192 0.97626 0.98291 1.23571 0.93964 0.90457 0.95183 1.67844 1.24030 1.20551 0.98199 0.92173 0.90945 0.89595 0.74291 0.82155 0.82065 0.92261 0.89267 0.92583 0.90987 0.92076 0.92133 0.88343 0.79975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.40 11.14 59.85 0.67 1.06 16 2 N -1.12 -7.80 6.19 -16.64 -0.10 -7.90 16 3 S 2.71 30.10 5.80 -107.50 -0.62 29.48 16 4 O -0.95 -11.87 16.97 -57.17 -0.97 -12.84 16 5 O -0.93 -13.46 17.85 -57.17 -1.02 -14.48 16 6 C -0.44 -5.66 6.84 -17.47 -0.12 -5.78 16 7 C -0.10 -1.14 9.54 -39.50 -0.38 -1.52 16 8 C -0.04 -0.49 9.72 -38.85 -0.38 -0.87 16 9 C -0.10 -1.71 5.89 -104.84 -0.62 -2.33 16 10 C 0.50 10.36 7.28 34.61 0.25 10.61 16 11 O -0.47 -10.94 14.61 -19.24 -0.28 -11.22 16 12 O -0.35 -7.55 7.11 -40.52 -0.29 -7.84 16 13 C 0.19 4.33 0.10 -90.96 -0.01 4.32 16 14 C -0.52 -14.06 7.91 -34.44 -0.27 -14.33 16 15 H 0.08 2.56 8.06 -52.48 -0.42 2.14 16 16 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 17 N -0.88 -26.22 13.96 55.43 0.77 -25.45 16 18 Si 0.86 20.76 25.16 -169.99 -4.28 16.48 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.24 -5.35 5.42 56.52 0.31 -5.04 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 C -0.14 -2.70 6.92 -25.83 -0.18 -2.87 16 23 C -0.14 -2.40 8.03 -25.83 -0.21 -2.61 16 24 C -0.13 -2.45 5.65 -25.92 -0.15 -2.60 16 25 C 0.13 2.03 10.79 -17.12 -0.18 1.84 16 26 N -0.40 -5.95 10.09 -12.10 -0.12 -6.08 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.42 2.13 8.96 -34.47 -0.31 1.82 16 31 H 0.16 1.35 7.59 -52.48 -0.40 0.95 16 32 H 0.16 2.05 7.74 -52.49 -0.41 1.65 16 33 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 34 H 0.09 1.74 8.09 -51.93 -0.42 1.32 16 35 H 0.06 1.08 7.38 -51.93 -0.38 0.70 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 1.14 6.79 -51.93 -0.35 0.79 16 39 H 0.10 1.91 8.09 -51.93 -0.42 1.49 16 40 H 0.18 2.66 7.63 -52.49 -0.40 2.26 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -36.00 351.93 -8.13 -44.13 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -4.86 Total: 3.22 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -1.67 Total: -12.81 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.55 Total: -39.42 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -2.56 Total: -46.38 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.28 Total: 16.48 kcal Atomic # 16 Polarization: 30.10 SS G_CDS: -0.62 Total: 29.48 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.00 -8.13 -44.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856291.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.862 kcal (2) G-P(sol) polarization free energy of solvation -36.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds