Wall clock time and date at job start Sat Apr 11 2020 05:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 S 1.65606 * 120.00128 * 2 1 4 4 O 1.42093 * 106.40174 * 311.46651 * 3 2 1 5 5 O 1.42095 * 106.39998 * 178.54127 * 3 2 1 6 6 C 1.76200 * 107.21343 * 65.00466 * 3 2 1 7 7 C 1.38363 * 119.45349 * 270.01774 * 6 3 2 8 8 C 1.38345 * 119.31009 * 179.70168 * 7 6 3 9 9 C 1.40075 * 118.28086 * 0.53816 * 8 7 6 10 10 C 1.47722 * 120.56373 * 179.73018 * 9 8 7 11 11 O 1.21464 * 120.00144 * 3.51302 * 10 9 8 12 12 O 1.34711 * 119.99665 * 183.50238 * 10 9 8 13 13 C 1.45201 * 116.99710 * 183.32026 * 12 10 9 14 14 C 1.50703 * 112.84947 * 295.52683 * 13 12 10 15 15 H 1.08006 * 120.00036 * 117.66643 * 14 13 12 16 16 C 1.37876 * 120.00150 * 297.67537 * 14 13 12 17 17 N 1.31513 * 120.00488 * 173.35857 * 16 14 13 18 18 Si 1.86799 * 119.99713 * 353.35393 * 16 14 13 19 19 H 1.48495 * 109.47400 * 270.04415 * 18 16 14 20 20 H 1.48497 * 109.47254 * 30.04761 * 18 16 14 21 21 H 1.48505 * 109.47052 * 150.04648 * 18 16 14 22 22 C 1.53782 * 113.61809 * 66.72113 * 13 12 10 23 23 C 1.53953 * 87.01762 * 89.22907 * 22 13 12 24 24 C 1.53779 * 87.11286 * 25.36432 * 23 22 13 25 25 C 1.39570 * 118.87377 * 359.46818 * 9 8 7 26 26 N 1.31692 * 120.55618 * 0.26866 * 25 9 8 27 27 H 1.08997 * 109.47032 * 299.99557 * 1 2 3 28 28 H 1.09000 * 109.46872 * 59.99825 * 1 2 3 29 29 H 1.08994 * 109.47048 * 179.97438 * 1 2 3 30 30 H 0.97000 * 120.00306 * 180.02562 * 2 1 3 31 31 H 1.08004 * 120.34742 * 359.97438 * 7 6 3 32 32 H 1.07998 * 120.86254 * 180.28360 * 8 7 6 33 33 H 0.96989 * 120.00261 * 179.97438 * 17 16 14 34 34 H 1.08998 * 113.61987 * 203.75208 * 22 13 12 35 35 H 1.09002 * 113.61111 * 334.65794 * 22 13 12 36 36 H 1.08993 * 113.54121 * 270.81380 * 23 22 13 37 37 H 1.09005 * 113.74266 * 139.94256 * 23 22 13 38 38 H 1.08998 * 113.62057 * 220.09073 * 24 23 22 39 39 H 1.09001 * 113.69240 * 89.19125 * 24 23 22 40 40 H 1.07995 * 119.72434 * 180.29157 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4342 0.0000 4 8 1.7120 2.2330 -1.0214 5 8 3.6738 1.1002 0.0347 6 6 1.9379 2.2413 1.5254 7 6 0.8549 3.0987 1.6055 8 6 0.5751 3.7261 2.8063 9 6 1.4148 3.4734 3.8986 10 6 1.1662 4.1210 5.2028 11 8 0.1912 4.8295 5.3531 12 8 2.0208 3.9255 6.2256 13 6 1.6751 4.5323 7.4987 14 6 1.6623 6.0383 7.4448 15 1 0.7460 6.5777 7.6345 16 6 2.8202 6.7276 7.1532 17 7 2.7834 8.0303 6.9772 18 14 4.4413 5.8109 7.0080 19 1 5.1010 5.7583 8.3374 20 1 4.1874 4.4293 6.5264 21 1 5.3244 6.5164 6.0448 22 6 0.4186 3.9284 8.1480 23 6 1.3557 2.9137 8.8279 24 6 2.4690 3.9651 8.6873 25 6 2.4872 2.5951 3.7353 26 7 2.7088 2.0180 2.5725 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.9501 -0.8400 -0.0004 31 1 0.2318 3.2730 0.7407 32 1 -0.2666 4.3966 2.8982 33 1 3.5981 8.5152 6.7724 34 1 -0.0778 4.6012 8.8473 35 1 -0.2689 3.4777 7.4323 36 1 1.5269 2.0147 8.2360 37 1 1.0896 2.6952 9.8622 38 1 3.4344 3.5441 8.4064 39 1 2.5355 4.6486 9.5338 40 1 3.1405 2.3867 4.5696 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810856291.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:47 Heat of formation + Delta-G solvation = -108.682514 kcal Electronic energy + Delta-G solvation = -27696.192738 eV Core-core repulsion = 23603.771240 eV Total energy + Delta-G solvation = -4092.421499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.99862 -41.01919 -38.97486 -38.49359 -37.12015 -36.32363 -35.96097 -34.62102 -33.98292 -33.10421 -29.09228 -26.89330 -26.84472 -26.66453 -25.08384 -24.22300 -22.63044 -20.92657 -20.28977 -19.67235 -19.44468 -18.73031 -18.33295 -18.09291 -17.35084 -17.18948 -16.81986 -16.40810 -16.12804 -15.90363 -15.73616 -15.27508 -15.19104 -14.90568 -14.62380 -14.53322 -14.28448 -13.84023 -13.70370 -13.37458 -13.37246 -13.28840 -13.27529 -12.99650 -12.73170 -12.53197 -12.29968 -12.08021 -11.97364 -11.75596 -11.59581 -11.39027 -11.08379 -10.99528 -10.85875 -10.70197 -10.57665 -10.43478 -8.43582 -6.53892 -1.22284 -0.81710 -0.18553 1.24013 1.29080 1.35020 1.48368 1.68849 1.86275 2.26541 2.28878 2.58048 2.77446 2.94106 3.39289 3.45829 3.52642 3.68144 3.76006 3.81071 3.96629 4.11878 4.18641 4.20815 4.35852 4.52141 4.66823 4.73686 4.81353 4.87185 4.92170 5.02149 5.02407 5.05988 5.06443 5.24708 5.46941 5.49314 5.71604 6.04530 6.16461 6.21590 6.55233 6.87534 7.18148 8.71404 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.003331 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.955838 B = 8403.604921 C = 8790.122290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -1.100 6.100 3 S 2.730 3.270 4 O -0.958 6.958 5 O -0.968 6.968 6 C -0.437 4.437 7 C -0.085 4.085 8 C -0.031 4.031 9 C -0.128 4.128 10 C 0.497 3.503 11 O -0.509 6.509 12 O -0.345 6.345 13 C 0.173 3.827 14 C -0.518 4.518 15 H 0.031 0.969 16 C 0.029 3.971 17 N -0.933 5.933 18 Si 0.916 3.084 19 H -0.255 1.255 20 H -0.211 1.211 21 H -0.300 1.300 22 C -0.141 4.141 23 C -0.116 4.116 24 C -0.127 4.127 25 C 0.130 3.870 26 N -0.410 5.410 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.433 0.567 31 H 0.199 0.801 32 H 0.169 0.831 33 H 0.268 0.732 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.657 -20.913 -11.543 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.865 5.865 3 S 2.811 3.189 4 O -0.947 6.947 5 O -0.958 6.958 6 C -0.654 4.654 7 C -0.105 4.105 8 C -0.058 4.058 9 C -0.131 4.131 10 C 0.340 3.660 11 O -0.398 6.398 12 O -0.262 6.262 13 C 0.139 3.861 14 C -0.555 4.555 15 H 0.049 0.951 16 C -0.171 4.171 17 N -0.572 5.572 18 Si 0.739 3.261 19 H -0.179 1.179 20 H -0.133 1.133 21 H -0.227 1.227 22 C -0.179 4.179 23 C -0.153 4.153 24 C -0.164 4.164 25 C -0.031 4.031 26 N -0.120 5.120 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.131 0.869 30 H 0.271 0.729 31 H 0.216 0.784 32 H 0.187 0.813 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -3.750 -20.631 -12.200 24.260 hybrid contribution -0.256 1.405 1.026 1.758 sum -4.006 -19.226 -11.175 22.595 Atomic orbital electron populations 1.21907 0.76550 1.06738 1.02827 1.54969 1.17277 1.23274 1.90986 1.01327 0.72395 0.73160 0.72063 1.93614 1.79156 1.69940 1.51963 1.93574 1.32518 1.83258 1.86436 1.34296 1.01162 1.10876 1.19026 1.22339 0.95836 0.92989 0.99357 1.22135 0.97621 0.95479 0.90519 1.20842 0.99524 0.99849 0.92922 1.21035 0.81084 0.78757 0.85164 1.90804 1.29707 1.35252 1.83988 1.86524 1.48764 1.70037 1.20918 1.21329 0.96173 0.90431 0.78181 1.21174 0.95577 0.90228 1.48526 0.95059 1.25888 1.03211 0.95259 0.92720 1.70083 1.29806 1.09450 1.47862 0.86263 0.78580 0.81982 0.79295 1.17945 1.13328 1.22734 1.23286 0.96370 0.98618 0.99599 1.22845 0.94447 0.96148 1.01887 1.23231 0.98497 0.98402 0.96271 1.23632 0.93572 0.90095 0.95806 1.67892 1.24718 1.20976 0.98374 0.91649 0.90296 0.86858 0.72898 0.78418 0.81322 0.92348 0.90210 0.92798 0.88979 0.88878 0.90809 0.88682 0.79365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 11.14 127.77 1.42 1.83 16 2 N -1.10 -11.92 6.19 -206.54 -1.28 -13.20 16 3 S 2.73 54.09 5.80 -56.49 -0.33 53.76 16 4 O -0.96 -21.47 16.97 -128.00 -2.17 -23.64 16 5 O -0.97 -26.30 17.85 -128.00 -2.28 -28.59 16 6 C -0.44 -10.28 6.84 84.71 0.58 -9.70 16 7 C -0.08 -1.77 9.54 22.32 0.21 -1.55 16 8 C -0.03 -0.82 9.72 22.74 0.22 -0.60 16 9 C -0.13 -4.19 5.89 -20.00 -0.12 -4.31 16 10 C 0.50 20.77 7.28 70.33 0.51 21.28 16 11 O -0.51 -24.50 14.61 19.95 0.29 -24.21 16 12 O -0.35 -14.74 7.11 -56.21 -0.40 -15.14 16 13 C 0.17 7.79 0.10 -11.01 0.00 7.78 16 14 C -0.52 -29.45 7.91 25.60 0.20 -29.25 16 15 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 16 C 0.03 1.70 5.47 84.65 0.46 2.17 16 17 N -0.93 -58.59 13.96 21.45 0.30 -58.30 16 18 Si 0.92 42.91 25.16 68.60 1.73 44.64 16 19 H -0.25 -11.09 7.11 99.48 0.71 -10.38 16 20 H -0.21 -8.91 5.42 99.48 0.54 -8.37 16 21 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 22 C -0.14 -5.45 6.92 31.18 0.22 -5.23 16 23 C -0.12 -3.47 8.03 31.18 0.25 -3.22 16 24 C -0.13 -4.66 5.65 31.12 0.18 -4.48 16 25 C 0.13 3.88 10.79 85.04 0.92 4.80 16 26 N -0.41 -11.55 10.09 -192.19 -1.94 -13.49 16 27 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.08 0.43 8.10 -2.39 -0.02 0.42 16 29 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.43 3.04 8.96 -96.74 -0.87 2.17 16 31 H 0.20 2.58 7.59 -2.91 -0.02 2.56 16 32 H 0.17 4.16 7.74 -2.91 -0.02 4.14 16 33 H 0.27 15.76 8.31 -92.72 -0.77 14.99 16 34 H 0.08 3.17 8.09 -2.39 -0.02 3.16 16 35 H 0.05 2.07 7.38 -2.39 -0.02 2.05 16 36 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.07 2.52 6.79 -2.39 -0.02 2.51 16 39 H 0.09 3.54 8.09 -2.39 -0.02 3.52 16 40 H 0.19 5.21 7.63 -2.91 -0.02 5.18 16 Total: -1.00 -82.38 351.93 -0.97 -83.35 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.06 Total: 15.30 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 5.05 Total: -20.49 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -2.92 Total: -84.98 kcal Atomic # 8 Polarization: -87.01 SS G_CDS: -4.56 Total: -91.58 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.73 Total: 44.64 kcal Atomic # 16 Polarization: 54.09 SS G_CDS: -0.33 Total: 53.76 kcal Total: -82.38 -0.97 -83.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856291.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.329 kcal (2) G-P(sol) polarization free energy of solvation -82.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds