Wall clock time and date at job start Sat Apr 11 2020 05:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47614 * 2 1 4 4 O 1.45208 * 109.46738 * 120.00341 * 2 1 3 5 5 C 1.34234 * 116.99370 * 269.99699 * 4 2 1 6 6 O 1.20817 * 120.00353 * 0.02562 * 5 4 2 7 7 C 1.50706 * 119.99312 * 179.97438 * 5 4 2 8 8 C 1.53003 * 109.46664 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47091 * 180.02562 * 8 7 5 10 10 H 1.08003 * 119.99635 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99979 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99664 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00042 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.46972 * 90.00275 * 13 11 9 15 15 H 1.48501 * 109.47122 * 210.00318 * 13 11 9 16 16 H 1.48499 * 109.47202 * 330.00216 * 13 11 9 17 17 C 1.50700 * 109.47003 * 239.99753 * 2 1 3 18 18 O 1.21281 * 119.99877 * 245.00531 * 17 2 1 19 19 N 1.34773 * 119.99951 * 65.00666 * 17 2 1 20 20 C 1.38663 * 119.99851 * 180.02562 * 19 17 2 21 21 S 1.70446 * 124.65667 * 359.96860 * 20 19 17 22 22 C 1.75468 * 92.53067 * 180.02562 * 21 20 19 23 23 C 1.32549 * 110.80691 * 359.71573 * 22 21 20 24 24 C 1.37075 * 124.65673 * 179.97438 * 20 19 17 25 25 C 1.46626 * 123.59238 * 359.97438 * 24 20 19 26 26 N 1.34777 * 120.00276 * 180.02562 * 25 24 20 27 27 O 1.21712 * 119.99860 * 359.97438 * 25 24 20 28 28 H 1.08997 * 109.47614 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47313 * 300.00549 * 1 2 3 30 30 H 1.09004 * 109.46842 * 59.99475 * 1 2 3 31 31 H 1.08995 * 109.47194 * 299.99978 * 7 5 4 32 32 H 1.09001 * 109.46835 * 60.00279 * 7 5 4 33 33 H 1.09007 * 109.46950 * 299.99844 * 8 7 5 34 34 H 1.08992 * 109.47207 * 59.99965 * 8 7 5 35 35 H 0.97004 * 119.99840 * 180.02562 * 12 11 9 36 36 H 0.96994 * 120.00291 * 359.97438 * 19 17 2 37 37 H 1.07993 * 124.59656 * 179.97438 * 22 21 20 38 38 H 1.07992 * 123.42012 * 180.25332 * 23 22 21 39 39 H 0.97001 * 120.00485 * 180.02562 * 26 25 24 40 40 H 0.97005 * 119.99790 * 359.71974 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0139 -0.6846 1.1856 5 6 2.2171 0.0640 2.2812 6 8 1.9973 1.2516 2.2507 7 6 2.7181 -0.5774 3.5496 8 6 2.8634 0.4889 4.6372 9 6 3.3650 -0.1522 5.9054 10 1 3.5602 -1.2141 5.9330 11 6 3.5738 0.6167 7.0307 12 7 4.0120 0.0572 8.1373 13 14 3.2355 2.4532 6.9830 14 1 1.8257 2.7071 7.3744 15 1 4.1448 3.1487 7.9290 16 1 3.4672 2.9637 5.6079 17 6 2.0323 -0.7105 -1.2304 18 8 2.6529 -1.7468 -1.1214 19 7 1.7920 -0.1942 -2.4520 20 6 2.2537 -0.8482 -3.5841 21 16 3.1353 -2.3069 -3.5691 22 6 3.2589 -2.3408 -5.3191 23 6 2.6491 -1.2928 -5.8545 24 6 2.0639 -0.4104 -4.8691 25 6 1.3397 0.8185 -5.2089 26 7 1.1953 1.1808 -6.4989 27 8 0.8682 1.5108 -4.3258 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 2.0085 -1.3370 3.8775 32 1 3.6869 -1.0411 3.3641 33 1 3.5733 1.2483 4.3090 34 1 1.8949 0.9530 4.8227 35 1 4.1585 0.5980 8.9291 36 1 1.2954 0.6344 -2.5392 37 1 3.7599 -3.1132 -5.8835 38 1 2.5975 -1.1141 -6.9183 39 1 0.7166 1.9940 -6.7237 40 1 1.5740 0.6308 -7.2025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812617505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:53 Heat of formation + Delta-G solvation = -161.050895 kcal Electronic energy + Delta-G solvation = -26237.670468 eV Core-core repulsion = 22142.978106 eV Total energy + Delta-G solvation = -4094.692362 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.25591 -41.37762 -40.54404 -38.08543 -37.72663 -36.12695 -35.65535 -34.49372 -33.69745 -33.02709 -29.87877 -28.50007 -26.66466 -25.50013 -23.86304 -22.76613 -22.36369 -21.52175 -20.96761 -19.62879 -19.28751 -18.85170 -18.50566 -18.06270 -17.54639 -17.34946 -16.82201 -16.68226 -16.28395 -16.12888 -15.86240 -15.54578 -15.21678 -15.17075 -14.83786 -14.56097 -14.42103 -14.25483 -13.82227 -13.58658 -13.40974 -13.21405 -12.99371 -12.89876 -12.31393 -12.16464 -12.07255 -12.03746 -12.00609 -11.80996 -11.55660 -11.42741 -11.34357 -10.89105 -10.78928 -10.73197 -9.51157 -9.25289 -8.31734 -6.36298 -0.40525 0.22355 0.84859 0.97473 1.08260 1.12832 1.17101 1.34916 1.37049 1.50457 1.97200 2.31183 2.34595 2.69240 3.03519 3.11370 3.54531 3.64745 3.75795 3.86907 3.97775 4.25172 4.29914 4.35957 4.47288 4.49559 4.68024 4.78529 4.84978 4.92724 5.11296 5.14935 5.27839 5.30065 5.34819 5.57185 5.74758 5.89675 6.20889 6.41689 6.44799 6.61170 6.72772 7.28385 7.28630 8.83835 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.022393 B = 0.002191 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.114880 B =12773.741143 C =13554.840760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.068 3.932 3 H 0.119 0.881 4 O -0.336 6.336 5 C 0.472 3.528 6 O -0.528 6.528 7 C -0.091 4.091 8 C 0.003 3.997 9 C -0.533 4.533 10 H 0.050 0.950 11 C 0.013 3.987 12 N -0.942 5.942 13 Si 0.941 3.059 14 H -0.266 1.266 15 H -0.280 1.280 16 H -0.257 1.257 17 C 0.512 3.488 18 O -0.505 6.505 19 N -0.614 5.614 20 C 0.049 3.951 21 S 0.262 5.738 22 C -0.269 4.269 23 C -0.083 4.083 24 C -0.242 4.242 25 C 0.586 3.414 26 N -0.823 5.823 27 O -0.597 6.597 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.018 0.982 34 H 0.021 0.979 35 H 0.268 0.732 36 H 0.435 0.565 37 H 0.199 0.801 38 H 0.187 0.813 39 H 0.413 0.587 40 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.328 -2.316 -37.887 38.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.010 3.990 3 H 0.136 0.864 4 O -0.252 6.252 5 C 0.317 3.683 6 O -0.417 6.417 7 C -0.128 4.128 8 C -0.035 4.035 9 C -0.570 4.570 10 H 0.068 0.932 11 C -0.185 4.185 12 N -0.583 5.583 13 Si 0.765 3.235 14 H -0.191 1.191 15 H -0.206 1.206 16 H -0.181 1.181 17 C 0.298 3.702 18 O -0.380 6.380 19 N -0.265 5.265 20 C -0.170 4.170 21 S 0.524 5.476 22 C -0.405 4.405 23 C -0.111 4.111 24 C -0.263 4.263 25 C 0.373 3.627 26 N -0.386 5.386 27 O -0.481 6.481 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.122 0.878 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.037 0.963 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.281 0.719 37 H 0.216 0.784 38 H 0.204 0.796 39 H 0.245 0.755 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -5.667 -3.257 -35.840 36.431 hybrid contribution -0.754 2.306 -0.929 2.598 sum -6.421 -0.951 -36.769 37.338 Atomic orbital electron populations 1.22205 0.89160 1.04970 1.05553 1.22445 0.97975 0.97367 0.81227 0.86355 1.86669 1.77243 1.41753 1.19523 1.24477 0.72919 0.85740 0.85174 1.90612 1.49123 1.17686 1.84294 1.21376 1.04033 1.00365 0.87016 1.19334 0.97044 0.94604 0.92482 1.21329 1.44301 0.96017 0.95395 0.93172 1.25830 0.94314 1.03404 0.94937 1.70027 1.47400 1.38113 1.02711 0.85793 0.78790 0.80106 0.78827 1.19103 1.20561 1.18078 1.20761 0.79448 0.85306 0.84686 1.90667 1.38839 1.23282 1.85219 1.43011 1.53697 1.27581 1.02192 1.22450 1.03206 1.01639 0.89683 1.84650 1.47740 1.13094 1.02083 1.26219 1.09502 1.05561 0.99188 1.21138 0.97085 0.92370 1.00468 1.20097 1.13635 1.01657 0.90887 1.17513 0.77960 0.83573 0.83703 1.43407 1.58926 1.29903 1.06413 1.90670 1.52636 1.55980 1.48826 0.90035 0.90148 0.87818 0.86511 0.87035 0.96328 0.96093 0.92293 0.71928 0.78380 0.79570 0.75454 0.74932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 9.50 71.98 0.68 -2.64 16 2 C 0.07 1.79 2.97 29.85 0.09 1.88 16 3 H 0.12 3.08 7.16 -2.39 -0.02 3.06 16 4 O -0.34 -10.86 9.42 -45.12 -0.43 -11.28 16 5 C 0.47 17.19 7.93 71.24 0.56 17.75 16 6 O -0.53 -21.28 15.20 21.99 0.33 -20.95 16 7 C -0.09 -3.51 5.75 29.85 0.17 -3.33 16 8 C 0.00 0.14 3.33 29.85 0.10 0.24 16 9 C -0.53 -30.39 9.66 25.60 0.25 -30.14 16 10 H 0.05 3.04 7.99 -2.91 -0.02 3.02 16 11 C 0.01 0.77 5.47 84.65 0.46 1.23 16 12 N -0.94 -58.71 13.96 21.45 0.30 -58.41 16 13 Si 0.94 45.59 27.47 68.60 1.88 47.48 16 14 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 15 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 16 H -0.26 -12.14 6.54 99.48 0.65 -11.49 16 17 C 0.51 13.44 7.14 87.66 0.63 14.07 16 18 O -0.51 -15.62 13.93 15.72 0.22 -15.40 16 19 N -0.61 -13.92 5.29 -309.08 -1.63 -15.55 16 20 C 0.05 1.04 6.98 83.34 0.58 1.62 16 21 S 0.26 4.90 19.96 -56.49 -1.13 3.77 16 22 C -0.27 -2.77 11.09 66.67 0.74 -2.03 16 23 C -0.08 -0.75 9.90 22.76 0.23 -0.52 16 24 C -0.24 -3.91 6.00 -19.73 -0.12 -4.02 16 25 C 0.59 9.58 8.05 86.43 0.70 10.27 16 26 N -0.82 -5.31 8.85 -176.41 -1.56 -6.87 16 27 O -0.60 -14.02 15.28 -4.39 -0.07 -14.09 16 28 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.10 1.64 7.92 -2.39 -0.02 1.62 16 31 H 0.12 4.15 8.14 -2.39 -0.02 4.13 16 32 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 33 H 0.02 0.91 7.16 -2.38 -0.02 0.90 16 34 H 0.02 1.01 7.53 -2.39 -0.02 0.99 16 35 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 36 H 0.44 9.40 5.95 -92.71 -0.55 8.85 16 37 H 0.20 0.81 8.06 -2.91 -0.02 0.79 16 38 H 0.19 0.03 7.10 -2.91 -0.02 0.01 16 39 H 0.41 1.81 8.93 -92.71 -0.83 0.99 16 40 H 0.42 -0.14 7.37 -92.70 -0.68 -0.82 16 Total: -1.00 -78.82 359.93 2.00 -76.81 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -0.99 Total: 10.11 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 5.07 Total: 4.38 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -2.90 Total: -80.83 kcal Atomic # 8 Polarization: -61.78 SS G_CDS: 0.06 Total: -61.72 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.88 Total: 47.48 kcal Atomic # 16 Polarization: 4.90 SS G_CDS: -1.13 Total: 3.77 kcal Total: -78.82 2.00 -76.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.236 kcal (2) G-P(sol) polarization free energy of solvation -78.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds