Wall clock time and date at job start Sat Apr 11 2020 05:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21287 * 120.00021 * 2 1 4 4 N 1.34774 * 119.99778 * 179.97438 * 2 1 3 5 5 C 1.39926 * 119.99999 * 185.27022 * 4 2 1 6 6 C 1.38868 * 120.06837 * 33.29516 * 5 4 2 7 7 C 1.38109 * 119.92948 * 180.02562 * 6 5 4 8 8 C 1.38279 * 120.07135 * 359.97438 * 7 6 5 9 9 S 1.76198 * 119.93091 * 179.97438 * 8 7 6 10 10 O 1.42100 * 106.40317 * 336.46468 * 9 8 7 11 11 O 1.42094 * 106.40410 * 203.54084 * 9 8 7 12 12 N 1.65606 * 107.21658 * 90.00281 * 9 8 7 13 13 C 1.34780 * 119.99645 * 65.00129 * 12 9 8 14 14 O 1.21278 * 120.00319 * 359.72228 * 13 12 9 15 15 C 1.50706 * 119.99624 * 179.72822 * 13 12 9 16 16 C 1.52998 * 109.46903 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.47130 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99944 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00191 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00037 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99909 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47432 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47122 * 120.00236 * 21 19 17 24 24 H 1.48503 * 109.46916 * 239.99458 * 21 19 17 25 25 C 1.38280 * 120.13950 * 0.25875 * 8 7 6 26 26 C 1.38106 * 120.06972 * 359.48389 * 25 8 7 27 27 H 1.09000 * 109.46741 * 270.00270 * 1 2 3 28 28 H 1.09003 * 109.46948 * 30.00011 * 1 2 3 29 29 H 1.08990 * 109.47306 * 150.00229 * 1 2 3 30 30 H 0.96999 * 119.99941 * 5.27770 * 4 2 1 31 31 H 1.08007 * 120.03690 * 359.97438 * 6 5 4 32 32 H 1.08007 * 119.96448 * 179.97438 * 7 6 5 33 33 H 0.96998 * 119.99722 * 244.72610 * 12 9 8 34 34 H 1.09000 * 109.46615 * 299.99401 * 15 13 12 35 35 H 1.08994 * 109.47572 * 59.99556 * 15 13 12 36 36 H 1.09006 * 109.46949 * 299.99568 * 16 15 13 37 37 H 1.08994 * 109.47483 * 59.99361 * 16 15 13 38 38 H 0.96992 * 120.00271 * 180.02562 * 20 19 17 39 39 H 1.08001 * 119.96601 * 179.74542 * 25 8 7 40 40 H 1.08002 * 120.03858 * 180.25958 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5757 -1.1698 0.1118 6 6 4.2150 -0.1976 0.8698 7 6 5.5919 -0.2025 0.9773 8 6 6.3338 -1.1744 0.3316 9 16 8.0903 -1.1768 0.4706 10 8 8.4691 0.1543 0.7929 11 8 8.5820 -1.8709 -0.6676 12 7 8.4765 -2.1046 1.7869 13 6 8.2023 -3.4242 1.7851 14 8 7.6681 -3.9312 0.8215 15 6 8.5593 -4.2696 2.9805 16 6 8.1445 -5.7194 2.7219 17 6 8.5021 -6.5650 3.9170 18 1 8.9780 -6.1135 4.7750 19 6 8.2217 -7.9149 3.9151 20 7 7.6417 -8.4646 2.8706 21 14 8.6656 -8.9631 5.3962 22 1 9.3046 -8.1117 6.4316 23 1 7.4348 -9.5802 5.9526 24 1 9.6106 -10.0309 4.9816 25 6 5.7006 -2.1411 -0.4279 26 6 4.3237 -2.1448 -0.5350 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5137 30 1 1.6990 -2.0055 -0.0764 31 1 3.6361 0.5621 1.3741 32 1 6.0897 0.5536 1.5663 33 1 8.9037 -1.6990 2.5576 34 1 9.6353 -4.2245 3.1490 35 1 8.0376 -3.8935 3.8605 36 1 7.0686 -5.7649 2.5531 37 1 8.6665 -6.0953 1.8420 38 1 7.4441 -9.4142 2.8694 39 1 6.2831 -2.8964 -0.9344 40 1 3.8293 -2.9025 -1.1249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813057998.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:00 Heat of formation + Delta-G solvation = -126.412324 kcal Electronic energy + Delta-G solvation = -26735.351343 eV Core-core repulsion = 22642.161022 eV Total energy + Delta-G solvation = -4093.190321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.91438 -39.69148 -38.74543 -37.22926 -35.91776 -35.27054 -34.22060 -33.61826 -31.40489 -31.24114 -31.06738 -29.09469 -26.05144 -23.68719 -23.16314 -22.61650 -20.95661 -20.35439 -19.68609 -18.48386 -18.01464 -17.63796 -17.35023 -17.08450 -16.14265 -15.92509 -15.49787 -15.13646 -14.86031 -14.57848 -14.52523 -14.36183 -13.91735 -13.68105 -13.53710 -13.34570 -13.04073 -12.73724 -12.71711 -12.64355 -12.21384 -12.13001 -12.04354 -11.65586 -11.31529 -11.19741 -11.01878 -10.91526 -10.65994 -10.62044 -10.30135 -10.09839 -9.97534 -9.51072 -9.19057 -9.17841 -8.75048 -8.40986 -6.04728 -4.09364 0.17209 0.58930 1.18287 2.05112 2.48089 2.54727 2.83127 3.27556 3.34748 3.35628 3.38228 3.68500 4.17139 4.26573 4.40101 4.58283 4.69238 4.73679 4.85023 4.90418 5.08688 5.14658 5.22588 5.29610 5.30990 5.34011 5.64025 5.81469 5.94760 5.97510 6.01641 6.02847 6.10695 6.59191 6.66418 6.85827 6.91954 7.57196 7.63385 7.71715 7.89132 7.95335 8.30848 8.98126 9.54917 11.06130 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011314 B = 0.002974 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.164426 B = 9413.106157 C =11171.514420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.511 3.489 3 O -0.521 6.521 4 N -0.677 5.677 5 C 0.202 3.798 6 C -0.150 4.150 7 C 0.000 4.000 8 C -0.691 4.691 9 S 2.680 3.320 10 O -0.955 6.955 11 O -0.933 6.933 12 N -1.058 6.058 13 C 0.530 3.470 14 O -0.486 6.486 15 C -0.131 4.131 16 C 0.033 3.967 17 C -0.528 4.528 18 H 0.058 0.942 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.027 3.973 26 C -0.169 4.169 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.416 0.584 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.432 0.568 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.026 0.974 37 H 0.028 0.972 38 H 0.261 0.739 39 H 0.155 0.845 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.000 16.685 -3.788 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.299 3.701 3 O -0.396 6.396 4 N -0.322 5.322 5 C 0.107 3.893 6 C -0.171 4.171 7 C -0.020 4.020 8 C -0.780 4.780 9 S 2.772 3.228 10 O -0.946 6.946 11 O -0.923 6.923 12 N -0.825 5.825 13 C 0.319 3.681 14 O -0.356 6.356 15 C -0.173 4.173 16 C -0.005 4.005 17 C -0.567 4.567 18 H 0.076 0.924 19 C -0.143 4.143 20 N -0.527 5.527 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C 0.007 3.993 26 C -0.190 4.190 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.103 0.897 30 H 0.253 0.747 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.268 0.732 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.044 0.956 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.173 0.827 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.542 17.314 -5.115 21.428 hybrid contribution -0.609 -1.059 1.358 1.827 sum -12.152 16.255 -3.757 20.640 Atomic orbital electron populations 1.21905 0.90218 1.05499 1.05424 1.21124 0.91105 0.82976 0.74865 1.90776 1.70560 1.31149 1.47065 1.43852 1.05274 1.10484 1.72614 1.18064 0.82704 0.95499 0.93056 1.21153 0.94716 1.00573 1.00698 1.20789 0.93607 0.94225 0.93409 1.30549 1.26133 1.07081 1.14251 1.02429 0.74065 0.72849 0.73419 1.93606 1.82130 1.34762 1.84082 1.93632 1.77710 1.73620 1.47318 1.55206 1.69560 1.20312 1.37418 1.21698 0.75449 0.80151 0.90831 1.90798 1.38854 1.70956 1.34957 1.22057 1.03068 0.98897 0.93278 1.18991 0.97857 0.86059 0.97601 1.21211 1.40219 0.93330 1.01897 0.92390 1.25017 0.95128 0.98096 0.96091 1.69991 1.41768 1.11910 1.29030 0.86524 0.78134 0.80436 0.82784 1.19717 1.21035 1.20975 1.20935 0.94203 0.93460 0.90703 1.21032 0.94162 1.01110 1.02715 0.88136 0.88306 0.89696 0.74675 0.84027 0.83884 0.73161 0.88987 0.89076 0.95573 0.95372 0.92926 0.82696 0.84466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.66 10.31 36.01 0.37 -0.29 16 2 C 0.51 4.37 7.68 -10.98 -0.08 4.29 16 3 O -0.52 -6.73 14.78 5.55 0.08 -6.65 16 4 N -0.68 -5.46 5.34 -9.86 -0.05 -5.51 16 5 C 0.20 2.33 6.28 -83.70 -0.53 1.81 16 6 C -0.15 -1.88 8.66 -39.40 -0.34 -2.22 16 7 C 0.00 0.00 9.51 -39.61 -0.38 -0.38 16 8 C -0.69 -9.70 5.74 -39.55 -0.23 -9.93 16 9 S 2.68 38.77 5.39 -107.50 -0.58 38.19 16 10 O -0.96 -14.23 17.27 -57.17 -0.99 -15.22 16 11 O -0.93 -16.77 16.22 -64.58 -1.05 -17.81 16 12 N -1.06 -13.75 5.70 31.22 0.18 -13.58 16 13 C 0.53 9.05 7.66 -10.98 -0.08 8.96 16 14 O -0.49 -9.86 13.19 -11.43 -0.15 -10.01 16 15 C -0.13 -2.36 5.64 -27.88 -0.16 -2.52 16 16 C 0.03 0.81 4.26 -27.89 -0.12 0.69 16 17 C -0.53 -14.14 9.11 -34.44 -0.31 -14.46 16 18 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 21 Si 0.89 20.87 29.54 -169.99 -5.02 15.84 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.03 0.38 8.51 -39.61 -0.34 0.05 16 26 C -0.17 -2.02 9.96 -39.40 -0.39 -2.42 16 27 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.42 1.92 8.82 -40.82 -0.36 1.56 16 31 H 0.14 1.72 6.41 -52.48 -0.34 1.38 16 32 H 0.14 1.51 7.61 -52.48 -0.40 1.11 16 33 H 0.43 3.83 8.83 -34.47 -0.30 3.52 16 34 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 35 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.16 2.34 6.85 -52.49 -0.36 1.98 16 40 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 360.38 15.07 5.43 5.43 Total: -1.00 -38.48 360.38 -8.78 -47.26 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -4.68 Total: 2.40 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -2.68 Total: -14.88 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.86 Total: -44.55 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -2.10 Total: -49.70 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 38.77 SS G_CDS: -0.58 Total: 38.19 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -38.48 -8.78 -47.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813057998.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.155 kcal (2) G-P(sol) polarization free energy of solvation -38.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds