Wall clock time and date at job start Sat Apr 11 2020 05:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21287 * 120.00021 * 2 1 4 4 N 1.34774 * 119.99778 * 179.97438 * 2 1 3 5 5 C 1.39926 * 119.99999 * 185.27022 * 4 2 1 6 6 C 1.38868 * 120.06837 * 33.29516 * 5 4 2 7 7 C 1.38109 * 119.92948 * 180.02562 * 6 5 4 8 8 C 1.38279 * 120.07135 * 359.97438 * 7 6 5 9 9 S 1.76198 * 119.93091 * 179.97438 * 8 7 6 10 10 O 1.42100 * 106.40317 * 336.46468 * 9 8 7 11 11 O 1.42094 * 106.40410 * 203.54084 * 9 8 7 12 12 N 1.65606 * 107.21658 * 90.00281 * 9 8 7 13 13 C 1.34780 * 119.99645 * 65.00129 * 12 9 8 14 14 O 1.21278 * 120.00319 * 359.72228 * 13 12 9 15 15 C 1.50706 * 119.99624 * 179.72822 * 13 12 9 16 16 C 1.52998 * 109.46903 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.47130 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99944 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00191 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00037 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99909 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47432 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47122 * 120.00236 * 21 19 17 24 24 H 1.48503 * 109.46916 * 239.99458 * 21 19 17 25 25 C 1.38280 * 120.13950 * 0.25875 * 8 7 6 26 26 C 1.38106 * 120.06972 * 359.48389 * 25 8 7 27 27 H 1.09000 * 109.46741 * 270.00270 * 1 2 3 28 28 H 1.09003 * 109.46948 * 30.00011 * 1 2 3 29 29 H 1.08990 * 109.47306 * 150.00229 * 1 2 3 30 30 H 0.96999 * 119.99941 * 5.27770 * 4 2 1 31 31 H 1.08007 * 120.03690 * 359.97438 * 6 5 4 32 32 H 1.08007 * 119.96448 * 179.97438 * 7 6 5 33 33 H 0.96998 * 119.99722 * 244.72610 * 12 9 8 34 34 H 1.09000 * 109.46615 * 299.99401 * 15 13 12 35 35 H 1.08994 * 109.47572 * 59.99556 * 15 13 12 36 36 H 1.09006 * 109.46949 * 299.99568 * 16 15 13 37 37 H 1.08994 * 109.47483 * 59.99361 * 16 15 13 38 38 H 0.96992 * 120.00271 * 180.02562 * 20 19 17 39 39 H 1.08001 * 119.96601 * 179.74542 * 25 8 7 40 40 H 1.08002 * 120.03858 * 180.25958 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5757 -1.1698 0.1118 6 6 4.2150 -0.1976 0.8698 7 6 5.5919 -0.2025 0.9773 8 6 6.3338 -1.1744 0.3316 9 16 8.0903 -1.1768 0.4706 10 8 8.4691 0.1543 0.7929 11 8 8.5820 -1.8709 -0.6676 12 7 8.4765 -2.1046 1.7869 13 6 8.2023 -3.4242 1.7851 14 8 7.6681 -3.9312 0.8215 15 6 8.5593 -4.2696 2.9805 16 6 8.1445 -5.7194 2.7219 17 6 8.5021 -6.5650 3.9170 18 1 8.9780 -6.1135 4.7750 19 6 8.2217 -7.9149 3.9151 20 7 7.6417 -8.4646 2.8706 21 14 8.6656 -8.9631 5.3962 22 1 9.3046 -8.1117 6.4316 23 1 7.4348 -9.5802 5.9526 24 1 9.6106 -10.0309 4.9816 25 6 5.7006 -2.1411 -0.4279 26 6 4.3237 -2.1448 -0.5350 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5137 30 1 1.6990 -2.0055 -0.0764 31 1 3.6361 0.5621 1.3741 32 1 6.0897 0.5536 1.5663 33 1 8.9037 -1.6990 2.5576 34 1 9.6353 -4.2245 3.1490 35 1 8.0376 -3.8935 3.8605 36 1 7.0686 -5.7649 2.5531 37 1 8.6665 -6.0953 1.8420 38 1 7.4441 -9.4142 2.8694 39 1 6.2831 -2.8964 -0.9344 40 1 3.8293 -2.9025 -1.1249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813057998.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:59 Heat of formation + Delta-G solvation = -156.626294 kcal Electronic energy + Delta-G solvation = -26736.661519 eV Core-core repulsion = 22642.161022 eV Total energy + Delta-G solvation = -4094.500497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.71439 -41.09841 -39.64576 -38.48151 -37.18893 -36.10065 -35.58503 -35.52851 -32.94019 -32.22686 -32.08269 -29.75397 -27.92875 -24.61218 -24.36459 -24.10562 -21.89767 -21.71933 -20.87990 -19.50878 -19.12857 -18.93452 -18.42642 -18.13201 -17.76830 -16.88234 -16.74242 -16.45502 -16.32195 -15.80501 -15.58142 -15.44116 -15.18799 -14.62309 -14.46932 -14.42201 -14.29850 -14.20695 -13.79665 -13.42865 -13.38526 -13.31424 -13.23882 -13.13737 -12.84889 -12.62220 -12.43780 -12.34424 -11.91437 -11.82896 -11.80353 -11.67312 -11.30255 -11.12838 -11.03176 -10.53112 -10.18578 -9.65134 -8.15033 -6.27288 -0.98213 -0.42555 0.18432 1.12871 1.34351 1.45471 1.46305 1.58807 1.64508 1.89694 2.31469 2.44986 2.57842 3.09997 3.19259 3.51455 3.60088 3.74823 3.80120 4.06449 4.12633 4.24350 4.34138 4.47398 4.49039 4.57047 4.61561 4.71794 4.81575 4.96247 4.99841 5.07348 5.08120 5.20349 5.55366 5.67573 5.71651 5.74893 5.89235 6.19870 6.24602 6.57749 6.92531 6.93654 7.42577 8.97402 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011314 B = 0.002974 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.164426 B = 9413.106157 C =11171.514420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.507 3.493 3 O -0.569 6.569 4 N -0.665 5.665 5 C 0.204 3.796 6 C -0.161 4.161 7 C -0.003 4.003 8 C -0.702 4.702 9 S 2.698 3.302 10 O -0.957 6.957 11 O -0.971 6.971 12 N -1.037 6.037 13 C 0.537 3.463 14 O -0.523 6.523 15 C -0.123 4.123 16 C 0.035 3.965 17 C -0.539 4.539 18 H 0.077 0.923 19 C -0.005 4.005 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.254 1.254 23 H -0.282 1.282 24 H -0.284 1.284 25 C 0.005 3.995 26 C -0.171 4.171 27 H 0.118 0.882 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.434 0.566 31 H 0.146 0.854 32 H 0.163 0.837 33 H 0.452 0.548 34 H 0.118 0.882 35 H 0.123 0.877 36 H -0.006 1.006 37 H -0.012 1.012 38 H 0.262 0.738 39 H 0.138 0.862 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.960 17.523 -1.804 21.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.298 3.702 3 O -0.447 6.447 4 N -0.312 5.312 5 C 0.107 3.893 6 C -0.182 4.182 7 C -0.023 4.023 8 C -0.793 4.793 9 S 2.792 3.208 10 O -0.948 6.948 11 O -0.961 6.961 12 N -0.806 5.806 13 C 0.326 3.674 14 O -0.396 6.396 15 C -0.164 4.164 16 C -0.003 4.003 17 C -0.577 4.577 18 H 0.095 0.905 19 C -0.202 4.202 20 N -0.575 5.575 21 Si 0.792 3.208 22 H -0.177 1.177 23 H -0.208 1.208 24 H -0.211 1.211 25 C -0.015 4.015 26 C -0.192 4.192 27 H 0.136 0.864 28 H 0.118 0.882 29 H 0.132 0.868 30 H 0.274 0.726 31 H 0.163 0.837 32 H 0.181 0.819 33 H 0.293 0.707 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.012 0.988 37 H 0.007 0.993 38 H 0.070 0.930 39 H 0.156 0.844 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.487 18.171 -3.094 22.264 hybrid contribution -0.398 -1.266 0.706 1.504 sum -12.886 16.905 -2.389 21.390 Atomic orbital electron populations 1.21958 0.86110 1.07023 1.06933 1.22063 0.92897 0.82042 0.73187 1.90757 1.71835 1.32802 1.49278 1.43901 1.03874 1.11626 1.71785 1.18202 0.84481 0.94650 0.91974 1.21332 0.94812 1.00969 1.01059 1.21038 0.93875 0.94121 0.93222 1.30359 1.25403 1.08024 1.15509 1.01695 0.74087 0.72251 0.72738 1.93595 1.82538 1.34609 1.84024 1.93587 1.78896 1.74453 1.49166 1.54780 1.69068 1.18699 1.38055 1.21473 0.74838 0.81107 0.89967 1.90805 1.40580 1.72027 1.36185 1.21875 1.04998 0.94850 0.94682 1.18794 0.95372 0.90416 0.95696 1.21730 1.39416 0.93806 1.02737 0.90456 1.26039 0.95101 0.99932 0.99157 1.70154 1.43486 1.12278 1.31600 0.85360 0.77783 0.78448 0.79166 1.17701 1.20789 1.21055 1.20955 0.95353 0.93658 0.91580 1.21256 0.93418 1.01772 1.02754 0.86408 0.88161 0.86797 0.72558 0.83682 0.81943 0.70688 0.86374 0.85877 0.98801 0.99312 0.92959 0.84403 0.82090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 10.31 71.24 0.73 -0.04 16 2 C 0.51 7.83 7.68 87.66 0.67 8.50 16 3 O -0.57 -14.34 14.78 -3.05 -0.05 -14.38 16 4 N -0.66 -9.55 5.34 -303.50 -1.62 -11.17 16 5 C 0.20 4.53 6.28 38.15 0.24 4.77 16 6 C -0.16 -3.91 8.66 22.39 0.19 -3.72 16 7 C 0.00 -0.06 9.51 22.25 0.21 0.15 16 8 C -0.70 -19.85 5.74 22.29 0.13 -19.72 16 9 S 2.70 77.93 5.39 -56.49 -0.30 77.63 16 10 O -0.96 -27.59 17.27 -128.00 -2.21 -29.80 16 11 O -0.97 -35.99 16.22 -120.92 -1.96 -37.95 16 12 N -1.04 -25.89 5.70 -173.53 -0.99 -26.88 16 13 C 0.54 18.23 7.66 87.66 0.67 18.90 16 14 O -0.52 -22.06 13.19 13.22 0.17 -21.88 16 15 C -0.12 -4.27 5.64 29.85 0.17 -4.10 16 16 C 0.04 1.78 4.26 29.85 0.13 1.91 16 17 C -0.54 -28.63 9.11 25.60 0.23 -28.40 16 18 H 0.08 3.72 7.74 -2.91 -0.02 3.70 16 19 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 20 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 21 Si 0.97 42.48 29.54 68.60 2.03 44.51 16 22 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 25 C 0.00 0.14 8.51 22.25 0.19 0.33 16 26 C -0.17 -4.06 9.96 22.39 0.22 -3.83 16 27 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.43 2.94 8.82 -92.71 -0.82 2.12 16 31 H 0.15 3.43 6.41 -2.91 -0.02 3.41 16 32 H 0.16 3.22 7.61 -2.91 -0.02 3.20 16 33 H 0.45 6.98 8.83 -96.75 -0.85 6.13 16 34 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 35 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 36 H -0.01 -0.36 8.10 -2.38 -0.02 -0.38 16 37 H -0.01 -0.67 8.10 -2.39 -0.02 -0.69 16 38 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 39 H 0.14 4.48 6.85 -2.91 -0.02 4.46 16 40 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -86.56 360.38 -0.96 -87.52 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -0.56 Total: 13.77 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 4.26 Total: -25.06 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -2.33 Total: -94.34 kcal Atomic # 8 Polarization: -99.98 SS G_CDS: -4.04 Total: -104.02 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: 77.93 SS G_CDS: -0.30 Total: 77.63 kcal Total: -86.56 -0.96 -87.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813057998.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.108 kcal (2) G-P(sol) polarization free energy of solvation -86.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds