Wall clock time and date at job start Sat Apr 11 2020 05:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.47027 * 2 1 4 4 N 1.46501 * 109.47219 * 119.99863 * 2 1 3 5 5 C 1.34773 * 120.00102 * 274.99891 * 4 2 1 6 6 O 1.21362 * 120.00119 * 359.97438 * 5 4 2 7 7 C 1.49308 * 119.99765 * 180.02562 * 5 4 2 8 8 O 1.21398 * 119.99984 * 359.97438 * 7 5 4 9 9 N 1.34780 * 119.99903 * 180.27986 * 7 5 4 10 10 C 1.39814 * 119.99901 * 175.33735 * 9 7 5 11 11 C 1.38798 * 120.08231 * 34.62255 * 10 9 7 12 12 C 1.38148 * 120.00795 * 179.76856 * 11 10 9 13 13 C 1.38582 * 120.19236 * 0.50401 * 12 11 10 14 14 F 1.35097 * 119.91876 * 179.77156 * 13 12 11 15 15 C 1.38345 * 120.16714 * 359.74473 * 13 12 11 16 16 C 1.38736 * 119.98315 * 0.02562 * 15 13 12 17 17 O 1.35750 * 120.09389 * 180.02562 * 16 15 13 18 18 C 1.34797 * 117.00230 * 5.42349 * 17 16 15 19 19 H 1.08007 * 119.99303 * 354.95288 * 18 17 16 20 20 C 1.38654 * 120.00464 * 174.95764 * 18 17 16 21 21 N 1.31556 * 119.99674 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00112 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47407 * 59.99584 * 22 20 18 24 24 H 1.48496 * 109.47447 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47428 * 299.99896 * 22 20 18 26 26 C 1.50700 * 109.47214 * 240.00354 * 2 1 3 27 27 O 1.20822 * 119.99871 * 240.00039 * 26 2 1 28 28 O 1.34233 * 119.99877 * 59.99345 * 26 2 1 29 29 H 1.09005 * 109.46672 * 299.99720 * 1 2 3 30 30 H 1.08997 * 109.47299 * 60.00018 * 1 2 3 31 31 H 1.09000 * 109.46760 * 180.02562 * 1 2 3 32 32 H 0.96997 * 119.99313 * 95.00367 * 4 2 1 33 33 H 0.97000 * 119.99854 * 355.33230 * 9 7 5 34 34 H 1.07990 * 119.99293 * 359.97438 * 11 10 9 35 35 H 1.08000 * 119.90152 * 180.25642 * 12 11 10 36 36 H 1.07999 * 120.01042 * 180.02562 * 15 13 12 37 37 H 0.97002 * 119.99466 * 180.02562 * 21 20 18 38 38 H 0.96696 * 116.99414 * 180.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8589 1.1594 2.4115 7 6 2.6454 -0.7220 3.5760 8 8 2.9341 -1.8999 3.5215 9 7 2.7688 -0.0510 4.7384 10 6 3.1417 -0.7309 5.9018 11 6 4.0317 -1.7936 5.8316 12 6 4.4028 -2.4612 6.9827 13 6 3.8807 -2.0800 8.2085 14 9 4.2439 -2.7397 9.3302 15 6 2.9891 -1.0251 8.2867 16 6 2.6152 -0.3466 7.1358 17 8 1.7408 0.6891 7.2099 18 6 1.3592 1.0809 8.4420 19 1 1.6827 0.5250 9.3097 20 6 0.5516 2.1975 8.5953 21 7 0.1580 2.8747 7.5384 22 14 0.0234 2.7408 10.3027 23 1 1.2255 3.0530 11.1168 24 1 -0.8292 3.9518 10.1953 25 1 -0.7454 1.6497 10.9537 26 6 2.0324 -0.7103 -1.2305 27 8 2.7270 -1.6927 -1.1197 28 8 1.7080 -0.2517 -2.4496 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.2491 -1.6317 1.1525 33 1 2.5990 0.9036 4.7678 34 1 4.4367 -2.0964 4.8775 35 1 5.0987 -3.2853 6.9266 36 1 2.5841 -0.7299 9.2434 37 1 -0.4068 3.6561 7.6458 38 1 2.0534 -0.7409 -3.2088 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818019158.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:02 Heat of formation + Delta-G solvation = -194.035331 kcal Electronic energy + Delta-G solvation = -28763.758524 eV Core-core repulsion = 24101.422674 eV Total energy + Delta-G solvation = -4662.335851 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.099 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.33270 -41.19475 -40.51348 -39.38646 -38.28371 -36.71344 -36.42256 -35.62077 -34.18688 -32.47046 -31.25726 -29.58235 -28.67433 -25.90998 -25.56581 -24.61851 -22.52853 -21.81212 -21.07699 -20.36127 -19.04617 -18.42950 -18.36586 -17.77043 -17.08650 -16.77033 -16.51583 -16.00336 -15.75019 -15.46982 -15.30007 -15.13661 -15.00050 -14.35334 -14.19923 -14.03392 -13.83656 -13.63337 -13.60109 -13.32648 -13.02212 -12.67519 -12.42391 -12.28662 -12.11244 -11.97452 -11.73987 -11.48397 -11.42489 -11.00161 -10.93963 -10.78645 -10.59084 -9.86847 -9.81027 -9.63370 -9.42174 -9.00407 -7.99710 -7.26145 -6.63410 -4.22673 1.27186 1.68076 1.82259 2.03720 2.07119 2.71615 3.05570 3.06570 3.09435 3.29429 3.64966 3.81954 4.23754 4.47704 4.52638 4.66778 4.70504 4.77196 4.91583 5.02863 5.26561 5.38410 5.48712 5.66784 5.82150 5.89382 5.92492 5.98616 6.05192 6.40818 6.61903 6.79749 6.82480 6.83870 6.94390 7.12009 7.35299 7.47762 7.57785 7.77938 7.78307 8.16841 8.80417 9.39165 10.52349 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011450 B = 0.003094 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.858004 B = 9046.179079 C =11303.001612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.153 3.847 3 H 0.133 0.867 4 N -0.696 5.696 5 C 0.519 3.481 6 O -0.503 6.503 7 C 0.503 3.497 8 O -0.515 6.515 9 N -0.610 5.610 10 C 0.043 3.957 11 C -0.043 4.043 12 C -0.233 4.233 13 C 0.138 3.862 14 F -0.149 7.149 15 C -0.260 4.260 16 C 0.164 3.836 17 O -0.161 6.161 18 C -0.397 4.397 19 H 0.096 0.904 20 C 0.045 3.955 21 N -0.851 5.851 22 Si 0.944 3.056 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.268 1.268 26 C 0.480 3.520 27 O -0.505 6.505 28 O -0.508 6.508 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.422 0.578 33 H 0.427 0.573 34 H 0.142 0.858 35 H 0.125 0.875 36 H 0.145 0.855 37 H 0.274 0.726 38 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.187 -4.288 -14.357 15.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.047 3.953 3 H 0.151 0.849 4 N -0.354 5.354 5 C 0.300 3.700 6 O -0.377 6.377 7 C 0.284 3.716 8 O -0.392 6.392 9 N -0.255 5.255 10 C -0.051 4.051 11 C -0.063 4.063 12 C -0.253 4.253 13 C 0.119 3.881 14 F -0.128 7.128 15 C -0.280 4.280 16 C 0.107 3.893 17 O -0.063 6.063 18 C -0.472 4.472 19 H 0.113 0.887 20 C -0.161 4.161 21 N -0.484 5.484 22 Si 0.768 3.232 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.193 1.193 26 C 0.320 3.680 27 O -0.392 6.392 28 O -0.319 6.319 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.261 0.739 33 H 0.266 0.734 34 H 0.160 0.840 35 H 0.143 0.857 36 H 0.163 0.837 37 H 0.084 0.916 38 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 1.926 -3.933 -14.209 14.869 hybrid contribution 0.019 -0.218 0.573 0.613 sum 1.945 -4.152 -13.636 14.386 Atomic orbital electron populations 1.22180 0.91077 1.03778 1.04966 1.20365 0.96757 0.97945 0.80219 0.84943 1.45502 1.66728 1.15719 1.07481 1.20100 0.78782 0.86871 0.84223 1.90835 1.47341 1.15027 1.84449 1.19781 0.80416 0.86888 0.84524 1.90745 1.48791 1.15155 1.84492 1.42734 1.63771 1.13320 1.05660 1.16820 1.03794 1.01224 0.83255 1.20648 0.93737 0.93337 0.98563 1.20462 1.08203 1.05894 0.90781 1.17495 0.96543 0.92217 0.81871 1.91421 1.90489 1.79873 1.51035 1.20854 1.06170 1.00779 1.00244 1.18789 0.89279 0.89942 0.91269 1.83937 1.49662 1.40600 1.32109 1.21339 1.31913 1.12014 0.81978 0.88684 1.25329 0.95999 0.94912 0.99904 1.70014 1.31919 1.17193 1.29265 0.85731 0.79056 0.78590 0.79863 1.19277 1.20108 1.19316 1.23317 0.76991 0.82495 0.85158 1.90772 1.35425 1.25946 1.87055 1.84490 1.72093 1.58891 1.16443 0.89677 0.89704 0.91460 0.73876 0.73437 0.84005 0.85715 0.83748 0.91553 0.72483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.42 37.16 0.35 -0.99 16 2 C 0.15 1.46 3.09 -69.08 -0.21 1.25 16 3 H 0.13 1.22 7.58 -51.92 -0.39 0.83 16 4 N -0.70 -8.38 4.94 -55.41 -0.27 -8.65 16 5 C 0.52 7.79 7.85 -11.65 -0.09 7.69 16 6 O -0.50 -8.47 16.14 5.49 0.09 -8.38 16 7 C 0.50 8.58 7.73 -11.65 -0.09 8.49 16 8 O -0.52 -9.21 13.89 5.46 0.08 -9.14 16 9 N -0.61 -11.46 5.17 -10.16 -0.05 -11.51 16 10 C 0.04 0.88 6.32 -83.52 -0.53 0.35 16 11 C -0.04 -0.79 8.69 -39.41 -0.34 -1.13 16 12 C -0.23 -4.14 10.02 -39.49 -0.40 -4.54 16 13 C 0.14 2.67 7.29 -39.42 -0.29 2.38 16 14 F -0.15 -2.76 17.26 2.25 0.04 -2.72 16 15 C -0.26 -5.50 9.14 -39.36 -0.36 -5.86 16 16 C 0.16 3.71 6.67 -38.91 -0.26 3.45 16 17 O -0.16 -4.18 9.32 0.14 0.00 -4.18 16 18 C -0.40 -10.33 9.49 30.89 0.29 -10.04 16 19 H 0.10 2.30 5.20 -52.48 -0.27 2.03 16 20 C 0.04 1.16 5.49 -17.52 -0.10 1.06 16 21 N -0.85 -23.26 13.67 55.48 0.76 -22.51 16 22 Si 0.94 19.45 29.55 -169.99 -5.02 14.43 16 23 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 24 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 26 C 0.48 4.24 7.69 36.01 0.28 4.52 16 27 O -0.50 -5.95 16.60 -18.75 -0.31 -6.26 16 28 O -0.51 -2.94 13.33 -39.27 -0.52 -3.46 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.54 8.11 -51.93 -0.42 0.12 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.42 5.09 7.26 -40.82 -0.30 4.80 16 33 H 0.43 8.20 8.05 -40.82 -0.33 7.87 16 34 H 0.14 2.45 6.19 -52.49 -0.32 2.13 16 35 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.15 3.04 5.64 -52.49 -0.30 2.75 16 37 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.42 0.67 9.10 45.56 0.41 1.09 16 LS Contribution 349.86 15.07 5.27 5.27 Total: -1.00 -31.41 349.86 -4.01 -35.42 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -2.32 Total: 15.05 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -1.74 Total: 6.64 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.43 Total: -42.67 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.67 Total: -31.42 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.04 Total: -2.72 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.41 -4.01 -35.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818019158.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.610 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds