Wall clock time and date at job start Sat Apr 11 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.47027 * 2 1 4 4 N 1.46501 * 109.47219 * 119.99863 * 2 1 3 5 5 C 1.34773 * 120.00102 * 274.99891 * 4 2 1 6 6 O 1.21362 * 120.00119 * 359.97438 * 5 4 2 7 7 C 1.49308 * 119.99765 * 180.02562 * 5 4 2 8 8 O 1.21398 * 119.99984 * 359.97438 * 7 5 4 9 9 N 1.34780 * 119.99903 * 180.27986 * 7 5 4 10 10 C 1.39814 * 119.99901 * 175.33735 * 9 7 5 11 11 C 1.38798 * 120.08231 * 34.62255 * 10 9 7 12 12 C 1.38148 * 120.00795 * 179.76856 * 11 10 9 13 13 C 1.38582 * 120.19236 * 0.50401 * 12 11 10 14 14 F 1.35097 * 119.91876 * 179.77156 * 13 12 11 15 15 C 1.38345 * 120.16714 * 359.74473 * 13 12 11 16 16 C 1.38736 * 119.98315 * 0.02562 * 15 13 12 17 17 O 1.35750 * 120.09389 * 180.02562 * 16 15 13 18 18 C 1.34797 * 117.00230 * 5.42349 * 17 16 15 19 19 H 1.08007 * 119.99303 * 354.95288 * 18 17 16 20 20 C 1.38654 * 120.00464 * 174.95764 * 18 17 16 21 21 N 1.31556 * 119.99674 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00112 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47407 * 59.99584 * 22 20 18 24 24 H 1.48496 * 109.47447 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47428 * 299.99896 * 22 20 18 26 26 C 1.50700 * 109.47214 * 240.00354 * 2 1 3 27 27 O 1.20822 * 119.99871 * 240.00039 * 26 2 1 28 28 O 1.34233 * 119.99877 * 59.99345 * 26 2 1 29 29 H 1.09005 * 109.46672 * 299.99720 * 1 2 3 30 30 H 1.08997 * 109.47299 * 60.00018 * 1 2 3 31 31 H 1.09000 * 109.46760 * 180.02562 * 1 2 3 32 32 H 0.96997 * 119.99313 * 95.00367 * 4 2 1 33 33 H 0.97000 * 119.99854 * 355.33230 * 9 7 5 34 34 H 1.07990 * 119.99293 * 359.97438 * 11 10 9 35 35 H 1.08000 * 119.90152 * 180.25642 * 12 11 10 36 36 H 1.07999 * 120.01042 * 180.02562 * 15 13 12 37 37 H 0.97002 * 119.99466 * 180.02562 * 21 20 18 38 38 H 0.96696 * 116.99414 * 180.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8589 1.1594 2.4115 7 6 2.6454 -0.7220 3.5760 8 8 2.9341 -1.8999 3.5215 9 7 2.7688 -0.0510 4.7384 10 6 3.1417 -0.7309 5.9018 11 6 4.0317 -1.7936 5.8316 12 6 4.4028 -2.4612 6.9827 13 6 3.8807 -2.0800 8.2085 14 9 4.2439 -2.7397 9.3302 15 6 2.9891 -1.0251 8.2867 16 6 2.6152 -0.3466 7.1358 17 8 1.7408 0.6891 7.2099 18 6 1.3592 1.0809 8.4420 19 1 1.6827 0.5250 9.3097 20 6 0.5516 2.1975 8.5953 21 7 0.1580 2.8747 7.5384 22 14 0.0234 2.7408 10.3027 23 1 1.2255 3.0530 11.1168 24 1 -0.8292 3.9518 10.1953 25 1 -0.7454 1.6497 10.9537 26 6 2.0324 -0.7103 -1.2305 27 8 2.7270 -1.6927 -1.1197 28 8 1.7080 -0.2517 -2.4496 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.2491 -1.6317 1.1525 33 1 2.5990 0.9036 4.7678 34 1 4.4367 -2.0964 4.8775 35 1 5.0987 -3.2853 6.9266 36 1 2.5841 -0.7299 9.2434 37 1 -0.4068 3.6561 7.6458 38 1 2.0534 -0.7409 -3.2088 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818019158.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:01 Heat of formation + Delta-G solvation = -218.069255 kcal Electronic energy + Delta-G solvation = -28764.800713 eV Core-core repulsion = 24101.422674 eV Total energy + Delta-G solvation = -4663.378040 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.099 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.85955 -42.33016 -41.57990 -40.79648 -39.72509 -38.06950 -37.39890 -36.65162 -35.61204 -34.33772 -32.19288 -31.19684 -30.25094 -27.48705 -26.78581 -25.72097 -24.06098 -23.22264 -22.11916 -21.54731 -20.33838 -20.19250 -19.35427 -19.07164 -18.49060 -17.88288 -17.64171 -17.11614 -17.03421 -16.89848 -16.75194 -16.58039 -16.24263 -15.98503 -15.57841 -15.38838 -15.24498 -15.19395 -14.88064 -14.55138 -14.07439 -13.93488 -13.81572 -13.47626 -13.38292 -13.06313 -12.89179 -12.75347 -12.64638 -12.57661 -12.33683 -12.16872 -11.70209 -11.67705 -11.31632 -10.85922 -10.81310 -10.66429 -9.62458 -8.89774 -8.51102 -6.19244 -0.14706 0.37487 0.45207 0.93728 0.99156 1.37482 1.46320 1.52102 1.81586 2.02007 2.13741 2.44619 2.61414 3.03172 3.11614 3.21865 3.40745 3.79937 3.89820 3.91535 4.03552 4.14447 4.29463 4.48026 4.55597 4.68192 4.84808 4.95451 4.96766 5.15095 5.18359 5.23548 5.29813 5.32861 5.45620 5.73987 5.90788 5.96698 6.16397 6.49949 6.73606 6.84660 6.92017 7.58807 8.68550 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011450 B = 0.003094 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.858004 B = 9046.179079 C =11303.001612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.146 3.854 3 H 0.138 0.862 4 N -0.682 5.682 5 C 0.526 3.474 6 O -0.525 6.525 7 C 0.506 3.494 8 O -0.520 6.520 9 N -0.618 5.618 10 C 0.044 3.956 11 C -0.042 4.042 12 C -0.204 4.204 13 C 0.134 3.866 14 F -0.142 7.142 15 C -0.265 4.265 16 C 0.138 3.862 17 O -0.201 6.201 18 C -0.420 4.420 19 H 0.103 0.897 20 C -0.009 4.009 21 N -0.903 5.903 22 Si 1.013 2.987 23 H -0.258 1.258 24 H -0.271 1.271 25 H -0.260 1.260 26 C 0.494 3.506 27 O -0.537 6.537 28 O -0.495 6.495 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.424 0.576 33 H 0.423 0.577 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.139 0.861 37 H 0.276 0.724 38 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.962 -5.689 -15.263 16.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 H 0.156 0.844 4 N -0.339 5.339 5 C 0.307 3.693 6 O -0.400 6.400 7 C 0.288 3.712 8 O -0.397 6.397 9 N -0.263 5.263 10 C -0.051 4.051 11 C -0.062 4.062 12 C -0.224 4.224 13 C 0.114 3.886 14 F -0.121 7.121 15 C -0.286 4.286 16 C 0.084 3.916 17 O -0.106 6.106 18 C -0.495 4.495 19 H 0.121 0.879 20 C -0.209 4.209 21 N -0.539 5.539 22 Si 0.833 3.167 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.184 1.184 26 C 0.336 3.664 27 O -0.427 6.427 28 O -0.309 6.309 29 H 0.085 0.915 30 H 0.127 0.873 31 H 0.091 0.909 32 H 0.263 0.737 33 H 0.260 0.740 34 H 0.177 0.823 35 H 0.181 0.819 36 H 0.157 0.843 37 H 0.085 0.915 38 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 2.729 -5.398 -15.178 16.339 hybrid contribution -0.046 -0.021 0.646 0.648 sum 2.683 -5.419 -14.533 15.741 Atomic orbital electron populations 1.22156 0.89869 1.04224 1.05236 1.20593 0.97671 0.98003 0.79670 0.84448 1.45459 1.65313 1.15680 1.07404 1.19644 0.78924 0.86440 0.84327 1.90837 1.48721 1.15797 1.84694 1.20132 0.79599 0.86825 0.84655 1.90722 1.48893 1.15366 1.84734 1.42812 1.64373 1.13208 1.05923 1.17124 1.03428 1.01337 0.83196 1.20903 0.93040 0.92567 0.99664 1.20895 1.06645 1.05385 0.89488 1.17499 0.96411 0.91914 0.82766 1.91443 1.90306 1.79525 1.50777 1.20934 1.06582 1.01331 0.99714 1.19188 0.89791 0.89877 0.92726 1.83926 1.51941 1.42507 1.32177 1.21765 1.32505 1.12687 0.82559 0.87936 1.26456 0.95799 0.94679 1.03975 1.70142 1.33834 1.18271 1.31639 0.84714 0.78896 0.78275 0.74842 1.18265 1.19580 1.18424 1.22951 0.76148 0.81594 0.85700 1.90773 1.36983 1.27328 1.87572 1.84438 1.71550 1.58741 1.16128 0.91523 0.87292 0.90927 0.73680 0.73954 0.82310 0.81924 0.84345 0.91532 0.70003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.42 71.98 0.68 -1.69 16 2 C 0.15 2.58 3.09 44.25 0.14 2.72 16 3 H 0.14 2.36 7.58 -2.38 -0.02 2.35 16 4 N -0.68 -15.86 4.94 -447.57 -2.21 -18.07 16 5 C 0.53 15.74 7.85 87.23 0.68 16.43 16 6 O -0.53 -17.95 16.14 -3.28 -0.05 -18.00 16 7 C 0.51 17.19 7.73 87.22 0.67 17.86 16 8 O -0.52 -18.00 13.89 -3.40 -0.05 -18.05 16 9 N -0.62 -23.68 5.17 -304.41 -1.57 -25.26 16 10 C 0.04 1.77 6.32 38.32 0.24 2.01 16 11 C -0.04 -1.45 8.69 22.38 0.19 -1.26 16 12 C -0.20 -6.61 10.02 22.33 0.22 -6.39 16 13 C 0.13 4.91 7.29 22.38 0.16 5.08 16 14 F -0.14 -4.91 17.26 44.97 0.78 -4.13 16 15 C -0.26 -11.26 9.14 22.41 0.20 -11.06 16 16 C 0.14 6.41 6.67 22.71 0.15 6.56 16 17 O -0.20 -10.93 9.32 -22.41 -0.21 -11.14 16 18 C -0.42 -22.73 9.49 67.92 0.64 -22.09 16 19 H 0.10 5.14 5.20 -2.91 -0.02 5.12 16 20 C -0.01 -0.47 5.49 84.83 0.47 0.00 16 21 N -0.90 -51.65 13.67 21.61 0.30 -51.35 16 22 Si 1.01 40.65 29.55 68.60 2.03 42.68 16 23 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 24 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 25 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 26 C 0.49 7.75 7.69 71.24 0.55 8.30 16 27 O -0.54 -11.79 16.60 21.98 0.36 -11.43 16 28 O -0.49 -4.33 13.33 -51.45 -0.69 -5.01 16 29 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.11 1.13 8.11 -2.39 -0.02 1.11 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.42 9.78 7.26 -92.71 -0.67 9.10 16 33 H 0.42 17.04 8.05 -92.71 -0.75 16.29 16 34 H 0.16 5.05 6.19 -2.92 -0.02 5.03 16 35 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 36 H 0.14 5.96 5.64 -2.91 -0.02 5.94 16 37 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 38 H 0.44 0.08 9.10 -74.06 -0.67 -0.59 16 Total: -1.00 -69.74 349.86 2.80 -66.94 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: -0.89 Total: 36.38 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 5.01 Total: 16.46 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -3.49 Total: -94.68 kcal Atomic # 8 Polarization: -63.01 SS G_CDS: -0.63 Total: -63.64 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.78 Total: -4.13 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -69.74 2.80 -66.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818019158.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.129 kcal (2) G-P(sol) polarization free energy of solvation -69.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds