Wall clock time and date at job start Sat Apr 11 2020 05:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21291 * 119.99375 * 2 1 4 4 N 1.34773 * 120.00174 * 179.97438 * 2 1 3 5 5 C 1.39931 * 119.99722 * 184.62709 * 4 2 1 6 6 C 1.38891 * 120.06819 * 324.89484 * 5 4 2 7 7 C 1.38097 * 119.92695 * 180.02562 * 6 5 4 8 8 C 1.38314 * 120.06649 * 359.72547 * 7 6 5 9 9 C 1.38252 * 120.14112 * 0.54847 * 8 7 6 10 10 C 1.50705 * 119.96438 * 179.72657 * 9 8 7 11 11 C 1.50700 * 109.47004 * 269.72662 * 10 9 8 12 12 O 1.21284 * 119.99990 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99931 * 179.72159 * 11 10 9 14 14 S 1.65597 * 120.00013 * 180.27660 * 13 11 10 15 15 O 1.42101 * 104.27838 * 181.07062 * 14 13 11 16 16 O 1.42100 * 104.27822 * 308.92924 * 14 13 11 17 17 C 1.81400 * 104.45080 * 65.00170 * 14 13 11 18 18 C 1.50696 * 109.47245 * 180.02562 * 17 14 13 19 19 H 1.08003 * 119.99909 * 359.97438 * 18 17 14 20 20 C 1.37875 * 120.00350 * 179.97438 * 18 17 14 21 21 N 1.31515 * 119.99627 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00326 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46680 * 60.00427 * 22 20 18 24 24 H 1.48496 * 109.47151 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47649 * 300.00611 * 22 20 18 26 26 C 1.38131 * 120.07301 * 359.45105 * 9 8 7 27 27 H 1.09000 * 109.47456 * 270.00115 * 1 2 3 28 28 H 1.08991 * 109.47711 * 30.00723 * 1 2 3 29 29 H 1.09006 * 109.46834 * 150.01205 * 1 2 3 30 30 H 0.96996 * 120.00589 * 4.62322 * 4 2 1 31 31 H 1.07994 * 120.03712 * 359.97438 * 6 5 4 32 32 H 1.07995 * 119.96242 * 179.97438 * 7 6 5 33 33 H 1.08001 * 119.92059 * 180.27539 * 8 7 6 34 34 H 1.08995 * 109.47333 * 149.72651 * 10 9 8 35 35 H 1.09003 * 109.46666 * 29.72134 * 10 9 8 36 36 H 0.97001 * 119.99880 * 0.27737 * 13 11 10 37 37 H 1.09006 * 109.47087 * 299.99786 * 17 14 13 38 38 H 1.08994 * 109.47283 * 59.99839 * 17 14 13 39 39 H 0.96998 * 119.99851 * 179.97438 * 21 20 18 40 40 H 1.08002 * 120.03766 * 180.25265 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0505 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5768 -1.1690 0.0983 6 6 4.3178 -0.1597 -0.5029 7 6 5.6953 -0.1647 -0.4050 8 6 6.3366 -1.1701 0.2956 9 6 5.6021 -2.1792 0.8903 10 6 6.3054 -3.2762 1.6474 11 6 6.6217 -4.4116 0.7084 12 8 6.3075 -4.3372 -0.4606 13 7 7.2593 -5.5072 1.1664 14 16 7.6130 -6.7519 0.1332 15 8 8.2474 -7.7211 0.9562 16 8 6.3784 -7.0336 -0.5117 17 6 8.7977 -6.0415 -1.0425 18 6 9.1996 -7.0909 -2.0467 19 1 8.7841 -8.0858 -1.9837 20 6 10.0976 -6.7809 -3.0459 21 7 10.6039 -5.5695 -3.1224 22 14 10.5963 -8.0818 -4.2902 23 1 9.3934 -8.5531 -5.0225 24 1 11.5660 -7.5003 -5.2527 25 1 11.2261 -9.2265 -3.5843 26 6 4.2240 -2.1800 0.7961 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8898 -0.5139 29 1 -0.3633 -0.8902 -0.5137 30 1 1.6984 -2.0059 -0.0668 31 1 3.8173 0.6276 -1.0470 32 1 6.2720 0.6196 -0.8726 33 1 7.4137 -1.1693 0.3744 34 1 5.6599 -3.6363 2.4485 35 1 7.2308 -2.8881 2.0731 36 1 7.5109 -5.5665 2.1014 37 1 8.3358 -5.2012 -1.5609 38 1 9.6805 -5.6959 -0.5047 39 1 11.2359 -5.3515 -3.8251 40 1 3.6506 -2.9663 1.2643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821046513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:06 Heat of formation + Delta-G solvation = -125.323607 kcal Electronic energy + Delta-G solvation = -26622.915034 eV Core-core repulsion = 22529.771923 eV Total energy + Delta-G solvation = -4093.143111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.76173 -39.90794 -38.42796 -36.25661 -35.19237 -35.10074 -34.11307 -33.35652 -32.69753 -31.05755 -29.08526 -29.02367 -27.69401 -23.58319 -22.96674 -22.66842 -21.48755 -20.16045 -19.20776 -17.89071 -17.55373 -17.17593 -16.98454 -16.41512 -16.31161 -15.98955 -15.63569 -15.17421 -14.73561 -14.56653 -14.42402 -14.19769 -14.14859 -13.76969 -13.26167 -13.05675 -12.92295 -12.54040 -12.37733 -12.27406 -12.15570 -11.97520 -11.71297 -11.48080 -11.31171 -11.29959 -11.21096 -10.89304 -10.66871 -10.51850 -10.49022 -10.06981 -10.03859 -9.82873 -9.17882 -8.81057 -8.70612 -8.22785 -6.33385 -4.44657 0.99228 1.22329 1.35515 2.30038 2.38915 2.80998 3.17817 3.24053 3.26611 3.31081 3.73954 4.22308 4.38492 4.46589 4.50086 4.67458 4.76187 4.79338 4.95532 4.98566 5.01625 5.17874 5.18708 5.24471 5.31006 5.34285 5.39159 5.51617 5.58287 5.91026 6.18794 6.26444 6.45849 6.54685 6.57616 6.75508 6.94380 7.01679 7.11757 7.40833 7.72568 7.78617 7.80859 8.56243 9.22682 10.78367 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015776 B = 0.002656 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.439038 B =10539.329096 C =11152.103004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.509 3.491 3 O -0.529 6.529 4 N -0.673 5.673 5 C 0.137 3.863 6 C -0.118 4.118 7 C -0.101 4.101 8 C -0.113 4.113 9 C -0.054 4.054 10 C -0.103 4.103 11 C 0.531 3.469 12 O -0.477 6.477 13 N -1.062 6.062 14 S 2.554 3.446 15 O -0.970 6.970 16 O -0.954 6.954 17 C -0.403 4.403 18 C -0.536 4.536 19 H 0.070 0.930 20 C 0.078 3.922 21 N -0.877 5.877 22 Si 0.906 3.094 23 H -0.269 1.269 24 H -0.281 1.281 25 H -0.269 1.269 26 C -0.127 4.127 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.412 0.588 31 H 0.136 0.864 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.424 0.576 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.269 0.731 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.629 11.186 11.255 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.298 3.702 3 O -0.405 6.405 4 N -0.318 5.318 5 C 0.043 3.957 6 C -0.138 4.138 7 C -0.119 4.119 8 C -0.131 4.131 9 C -0.055 4.055 10 C -0.144 4.144 11 C 0.316 3.684 12 O -0.347 6.347 13 N -0.822 5.822 14 S 2.656 3.344 15 O -0.961 6.961 16 O -0.944 6.944 17 C -0.540 4.540 18 C -0.575 4.575 19 H 0.088 0.912 20 C -0.129 4.129 21 N -0.513 5.513 22 Si 0.732 3.268 23 H -0.194 1.194 24 H -0.207 1.207 25 H -0.194 1.194 26 C -0.147 4.147 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.102 0.898 30 H 0.248 0.752 31 H 0.154 0.846 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.258 0.742 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.824 11.284 10.397 21.335 hybrid contribution 0.558 -0.640 -0.301 0.901 sum -14.267 10.644 10.096 20.464 Atomic orbital electron populations 1.21888 0.90778 1.05301 1.05099 1.21001 0.90870 0.83167 0.75190 1.90732 1.70463 1.31310 1.48005 1.43614 1.05385 1.09952 1.72869 1.17637 0.82313 0.97382 0.98344 1.21236 0.93847 0.99154 0.99523 1.21026 0.93931 0.98534 0.98422 1.21052 1.00032 0.94231 0.97823 1.19010 0.92726 0.95043 0.98742 1.20794 1.03136 0.92699 0.97793 1.20426 0.75813 0.82796 0.89372 1.90943 1.48041 1.78778 1.16896 1.55504 1.66072 1.34280 1.26326 1.07094 0.77445 0.74070 0.75748 1.93519 1.78146 1.56808 1.67616 1.93525 1.43035 1.82271 1.75566 1.27587 1.08915 1.08502 1.08988 1.20238 1.28795 0.95706 1.12772 0.91226 1.24914 0.94822 0.95986 0.97174 1.69943 1.29076 1.19139 1.33097 0.86406 0.78831 0.81137 0.80436 1.19377 1.20666 1.19411 1.20681 0.94224 0.99273 1.00534 0.88490 0.88529 0.89837 0.75197 0.84589 0.85520 0.85621 0.87264 0.86799 0.74166 0.88368 0.89745 0.92089 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.31 36.00 0.37 -0.44 16 2 C 0.51 4.83 7.78 -10.99 -0.09 4.74 16 3 O -0.53 -7.21 14.54 5.55 0.08 -7.13 16 4 N -0.67 -6.15 5.34 -9.86 -0.05 -6.21 16 5 C 0.14 1.67 6.30 -83.69 -0.53 1.14 16 6 C -0.12 -1.56 8.70 -39.39 -0.34 -1.90 16 7 C -0.10 -1.26 10.04 -39.61 -0.40 -1.65 16 8 C -0.11 -1.40 9.69 -39.55 -0.38 -1.79 16 9 C -0.05 -0.66 4.37 -104.65 -0.46 -1.12 16 10 C -0.10 -1.04 5.83 -29.03 -0.17 -1.21 16 11 C 0.53 8.13 7.56 -10.98 -0.08 8.04 16 12 O -0.48 -9.61 14.14 -11.57 -0.16 -9.77 16 13 N -1.06 -15.82 5.60 31.22 0.17 -15.64 16 14 S 2.55 53.90 5.03 -107.50 -0.54 53.36 16 15 O -0.97 -21.69 18.08 -57.54 -1.04 -22.73 16 16 O -0.95 -23.28 17.04 -64.79 -1.10 -24.39 16 17 C -0.40 -9.90 5.64 36.00 0.20 -9.70 16 18 C -0.54 -14.95 9.13 -34.44 -0.31 -15.27 16 19 H 0.07 1.89 7.71 -52.48 -0.40 1.49 16 20 C 0.08 2.17 5.46 -17.82 -0.10 2.07 16 21 N -0.88 -25.04 13.29 55.43 0.74 -24.30 16 22 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 C -0.13 -1.49 9.62 -39.39 -0.38 -1.87 16 27 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.41 2.50 8.82 -40.82 -0.36 2.14 16 31 H 0.14 1.86 6.23 -52.49 -0.33 1.53 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.11 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.11 0.83 8.08 -51.93 -0.42 0.41 16 36 H 0.42 4.31 8.79 -34.47 -0.30 4.01 16 37 H 0.10 2.54 7.19 -51.92 -0.37 2.17 16 38 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 39 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 364.29 15.07 5.49 5.49 Total: -1.00 -39.94 364.29 -8.80 -48.75 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -4.70 Total: 5.41 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -2.66 Total: -18.96 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.86 Total: -46.15 kcal Atomic # 8 Polarization: -61.79 SS G_CDS: -2.23 Total: -64.02 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 53.90 SS G_CDS: -0.54 Total: 53.36 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -39.94 -8.80 -48.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821046513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.578 kcal (2) G-P(sol) polarization free energy of solvation -39.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds