Wall clock time and date at job start Sat Apr 11 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99772 * 2 1 4 4 C 1.53003 * 109.46943 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47154 * 65.00500 * 4 3 2 6 6 C 1.33294 * 119.99811 * 270.00069 * 5 4 3 7 7 H 1.08005 * 119.99734 * 145.34630 * 6 5 4 8 8 C 1.46784 * 119.99868 * 325.34219 * 6 5 4 9 9 N 1.29316 * 119.99681 * 156.61929 * 8 6 5 10 10 Si 1.86801 * 120.00249 * 336.61903 * 8 6 5 11 11 H 1.48501 * 109.46964 * 95.47063 * 10 8 6 12 12 H 1.48494 * 109.47232 * 215.47318 * 10 8 6 13 13 H 1.48507 * 109.46957 * 335.47207 * 10 8 6 14 14 C 1.34783 * 120.00237 * 89.99536 * 5 4 3 15 15 O 1.21537 * 119.99679 * 7.20711 * 14 5 4 16 16 C 1.47189 * 120.00012 * 187.20446 * 14 5 4 17 17 C 1.39858 * 120.22923 * 321.53544 * 16 14 5 18 18 C 1.37672 * 119.92463 * 179.97438 * 17 16 14 19 19 N 1.48030 * 119.80482 * 179.97438 * 18 17 16 20 20 O 1.31697 * 119.99777 * 5.11542 * 19 18 17 21 21 O 1.31701 * 119.99729 * 185.11926 * 19 18 17 22 22 C 1.38704 * 120.39047 * 359.97438 * 18 17 16 23 23 C 1.37887 * 120.45661 * 0.04098 * 22 18 17 24 24 C 1.39059 * 120.07035 * 359.95564 * 23 22 18 25 25 S 1.76198 * 120.19708 * 180.29800 * 24 23 22 26 26 C 1.81003 * 99.99616 * 359.72490 * 25 24 23 27 27 H 1.08997 * 109.47248 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46760 * 299.99412 * 1 2 3 29 29 H 1.09001 * 109.47518 * 59.99136 * 1 2 3 30 30 H 1.09009 * 109.47108 * 60.00888 * 3 2 1 31 31 H 1.08998 * 109.47446 * 300.00319 * 3 2 1 32 32 H 1.09004 * 109.47373 * 305.00288 * 4 3 2 33 33 H 1.09007 * 109.47038 * 185.00491 * 4 3 2 34 34 H 0.97001 * 120.00026 * 185.01376 * 9 8 6 35 35 H 1.08001 * 120.03451 * 359.95840 * 17 16 14 36 36 H 1.08004 * 119.76940 * 180.02562 * 22 18 17 37 37 H 1.08003 * 119.96744 * 180.02562 * 23 22 18 38 38 H 1.08994 * 109.47096 * 299.99983 * 26 25 24 39 39 H 1.08994 * 109.47245 * 60.00399 * 26 25 24 40 40 H 1.09001 * 109.46641 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5646 -1.2528 6 6 4.0935 -0.7606 -1.3347 7 1 3.8631 -1.2670 -2.2605 8 6 4.5365 -1.5317 -0.1669 9 7 4.2349 -2.7852 -0.0676 10 14 5.5358 -0.7021 1.1757 11 1 4.6296 -0.2617 2.2667 12 1 6.5314 -1.6620 1.7164 13 1 6.2407 0.4768 0.6113 14 6 4.2614 1.3340 -2.3219 15 8 4.2813 2.5442 -2.2116 16 6 4.5494 0.7086 -3.6228 17 6 5.2928 -0.4743 -3.6862 18 6 5.5581 -1.0542 -4.9063 19 7 6.3457 -2.3059 -4.9704 20 8 6.7044 -2.9158 -3.8596 21 8 6.6878 -2.8096 -6.1382 22 6 5.0916 -0.4725 -6.0759 23 6 4.3574 0.6938 -6.0319 24 6 4.0783 1.2957 -4.8099 25 16 3.1337 2.7819 -4.7492 26 6 2.8304 3.0337 -6.5158 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 1.6886 1.8464 0.8901 31 1 1.6885 1.8464 -0.8899 32 1 3.8515 0.5682 0.8409 33 1 3.9785 2.1766 0.0890 34 1 4.4641 -3.2770 0.7365 35 1 5.6586 -0.9322 -2.7790 36 1 5.3053 -0.9362 -7.0277 37 1 3.9978 1.1397 -6.9475 38 1 3.7822 3.1348 -7.0371 39 1 2.2857 2.1788 -6.9164 40 1 2.2400 3.9390 -6.6576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822287324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:13 Heat of formation + Delta-G solvation = 11.585375 kcal Electronic energy + Delta-G solvation = -28266.353411 eV Core-core repulsion = 24179.147119 eV Total energy + Delta-G solvation = -4087.206292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -40.15459 -38.85139 -37.62294 -36.97376 -35.10222 -33.90430 -32.55331 -31.87115 -31.55628 -29.43127 -28.89220 -26.29667 -25.94650 -25.10224 -23.55692 -22.62272 -21.83896 -19.72265 -18.53872 -17.68176 -17.49492 -16.82422 -16.50532 -16.04116 -15.65501 -15.43599 -15.17001 -14.94075 -14.82303 -14.79422 -14.22654 -13.94089 -13.75728 -13.63752 -13.04859 -12.86454 -12.75609 -12.50406 -12.21838 -11.94213 -11.83173 -11.57808 -11.51514 -11.03913 -10.99088 -10.82517 -10.62411 -10.37966 -10.29749 -10.18687 -10.10306 -9.93290 -9.39195 -9.17572 -9.00862 -8.76921 -8.18938 -7.36970 -6.80401 -3.98923 -0.27596 1.07647 1.36261 1.51822 1.72740 2.39997 2.86573 3.04308 3.08885 3.20265 3.79155 3.86465 4.04344 4.31576 4.59772 4.66572 4.90468 4.97104 4.97769 5.13890 5.19628 5.46144 5.50581 5.54641 5.59988 5.68061 5.74129 5.75277 5.80302 5.91120 5.98116 6.06575 6.09910 6.21214 6.30580 6.35180 6.71290 6.87643 7.28567 7.64391 7.75060 7.99524 8.52775 9.10543 9.51583 10.20903 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.008783 B = 0.006246 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3187.202547 B = 4481.919303 C = 6580.937535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.357 6.357 3 C 0.055 3.945 4 C 0.094 3.906 5 N -0.396 5.396 6 C -0.383 4.383 7 H 0.108 0.892 8 C 0.089 3.911 9 N -0.783 5.783 10 Si 0.876 3.124 11 H -0.268 1.268 12 H -0.279 1.279 13 H -0.253 1.253 14 C 0.475 3.525 15 O -0.585 6.585 16 C -0.075 4.075 17 C 0.021 3.979 18 C -0.032 4.032 19 N -0.007 5.007 20 O -0.162 6.162 21 O -0.210 6.210 22 C -0.042 4.042 23 C -0.149 4.149 24 C -0.033 4.033 25 S 0.001 5.999 26 C -0.193 4.193 27 H 0.081 0.919 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.289 0.711 35 H 0.191 0.809 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.839 7.938 -5.734 10.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C -0.022 4.022 4 C -0.028 4.028 5 N -0.109 5.109 6 C -0.511 4.511 7 H 0.125 0.875 8 C -0.132 4.132 9 N -0.410 5.410 10 Si 0.702 3.298 11 H -0.194 1.194 12 H -0.205 1.205 13 H -0.177 1.177 14 C 0.267 3.733 15 O -0.474 6.474 16 C -0.085 4.085 17 C -0.001 4.001 18 C -0.122 4.122 19 N 0.467 4.533 20 O -0.358 6.358 21 O -0.395 6.395 22 C -0.064 4.064 23 C -0.174 4.174 24 C -0.150 4.150 25 S 0.248 5.752 26 C -0.362 4.362 27 H 0.099 0.901 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.208 0.792 36 H 0.167 0.833 37 H 0.162 0.838 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.487 9.482 -4.682 11.914 hybrid contribution 0.682 -1.051 -0.383 1.310 sum -4.805 8.432 -5.065 10.947 Atomic orbital electron populations 1.22661 0.82874 1.02160 0.98791 1.88220 1.17806 1.26400 1.95028 1.22837 0.94384 0.85451 0.99573 1.21907 0.92644 0.99564 0.88709 1.42361 1.52479 1.06867 1.09241 1.19931 1.49457 0.80349 1.01347 0.87478 1.26877 0.94569 0.94289 0.97486 1.68674 1.35090 1.09709 1.27531 0.86945 0.80660 0.80859 0.81323 1.19415 1.20508 1.17652 1.17461 0.84856 0.86395 0.84541 1.90640 1.59295 1.13162 1.84258 1.19505 1.00580 0.94853 0.93612 1.22073 0.89468 0.90890 0.97624 1.20217 1.06427 0.88842 0.96752 1.50415 0.98271 1.02167 1.02478 1.96328 1.58883 1.61793 1.18785 1.96196 1.61442 1.70264 1.11612 1.20798 0.94346 0.94063 0.97205 1.20945 1.02990 0.96696 0.96743 1.22460 0.98256 0.98989 0.95264 1.86761 1.60400 1.23623 1.04386 1.24019 1.05706 1.06265 1.00185 0.90062 0.95138 0.94831 0.93575 0.93169 0.90690 0.88913 0.89844 0.79247 0.83324 0.83751 0.89652 0.89842 0.87672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.15 10.15 -35.23 -0.36 -7.51 16 3 C 0.06 1.02 6.28 37.16 0.23 1.25 16 4 C 0.09 1.93 4.76 -4.04 -0.02 1.91 16 5 N -0.40 -8.93 2.19 -114.56 -0.25 -9.18 16 6 C -0.38 -9.23 6.82 -13.46 -0.09 -9.32 16 7 H 0.11 2.77 5.92 -52.48 -0.31 2.46 16 8 C 0.09 2.16 5.47 -15.16 -0.08 2.08 16 9 N -0.78 -19.76 13.87 56.00 0.78 -18.98 16 10 Si 0.88 18.71 25.15 -169.99 -4.28 14.44 16 11 H -0.27 -5.46 6.75 56.52 0.38 -5.08 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 13 H -0.25 -5.46 7.11 56.52 0.40 -5.05 16 14 C 0.48 10.53 6.96 -12.62 -0.09 10.44 16 15 O -0.59 -13.47 14.62 5.33 0.08 -13.39 16 16 C -0.07 -1.50 5.40 -104.78 -0.57 -2.07 16 17 C 0.02 0.43 7.14 -39.18 -0.28 0.15 16 18 C -0.03 -0.60 6.87 -79.97 -0.55 -1.15 16 19 N -0.01 -0.15 4.99 33.95 0.17 0.02 16 20 O -0.16 -3.64 19.14 -31.57 -0.60 -4.25 16 21 O -0.21 -4.18 19.14 -31.57 -0.60 -4.79 16 22 C -0.04 -0.63 9.56 -39.54 -0.38 -1.01 16 23 C -0.15 -2.07 9.17 -39.41 -0.36 -2.43 16 24 C -0.03 -0.56 6.15 -38.40 -0.24 -0.79 16 25 S 0.00 0.01 20.38 -107.50 -2.19 -2.18 16 26 C -0.19 -1.85 8.98 101.05 0.91 -0.94 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.03 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.57 3.03 -51.93 -0.16 1.42 16 33 H 0.09 1.80 7.34 -51.92 -0.38 1.42 16 34 H 0.29 6.71 8.27 -40.82 -0.34 6.37 16 35 H 0.19 4.21 5.38 -52.49 -0.28 3.93 16 36 H 0.15 1.90 7.57 -52.48 -0.40 1.50 16 37 H 0.14 1.47 5.50 -52.48 -0.29 1.18 16 38 H 0.08 0.72 7.55 -51.92 -0.39 0.33 16 39 H 0.08 0.71 7.53 -51.92 -0.39 0.32 16 40 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 LS Contribution 352.11 15.07 5.31 5.31 Total: -1.00 -28.95 352.11 -6.64 -35.60 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -4.29 Total: 5.21 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -0.40 Total: -0.29 kcal Atomic # 7 Polarization: -28.84 SS G_CDS: 0.70 Total: -28.15 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -1.49 Total: -29.94 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -4.28 Total: 14.44 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.19 Total: -2.18 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.95 -6.64 -35.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822287324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.182 kcal (2) G-P(sol) polarization free energy of solvation -28.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds