Wall clock time and date at job start Sat Apr 11 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99772 * 2 1 4 4 C 1.53003 * 109.46943 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47154 * 65.00500 * 4 3 2 6 6 C 1.33294 * 119.99811 * 270.00069 * 5 4 3 7 7 H 1.08005 * 119.99734 * 145.34630 * 6 5 4 8 8 C 1.46784 * 119.99868 * 325.34219 * 6 5 4 9 9 N 1.29316 * 119.99681 * 156.61929 * 8 6 5 10 10 Si 1.86801 * 120.00249 * 336.61903 * 8 6 5 11 11 H 1.48501 * 109.46964 * 95.47063 * 10 8 6 12 12 H 1.48494 * 109.47232 * 215.47318 * 10 8 6 13 13 H 1.48507 * 109.46957 * 335.47207 * 10 8 6 14 14 C 1.34783 * 120.00237 * 89.99536 * 5 4 3 15 15 O 1.21537 * 119.99679 * 7.20711 * 14 5 4 16 16 C 1.47189 * 120.00012 * 187.20446 * 14 5 4 17 17 C 1.39858 * 120.22923 * 321.53544 * 16 14 5 18 18 C 1.37672 * 119.92463 * 179.97438 * 17 16 14 19 19 N 1.48030 * 119.80482 * 179.97438 * 18 17 16 20 20 O 1.31697 * 119.99777 * 5.11542 * 19 18 17 21 21 O 1.31701 * 119.99729 * 185.11926 * 19 18 17 22 22 C 1.38704 * 120.39047 * 359.97438 * 18 17 16 23 23 C 1.37887 * 120.45661 * 0.04098 * 22 18 17 24 24 C 1.39059 * 120.07035 * 359.95564 * 23 22 18 25 25 S 1.76198 * 120.19708 * 180.29800 * 24 23 22 26 26 C 1.81003 * 99.99616 * 359.72490 * 25 24 23 27 27 H 1.08997 * 109.47248 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46760 * 299.99412 * 1 2 3 29 29 H 1.09001 * 109.47518 * 59.99136 * 1 2 3 30 30 H 1.09009 * 109.47108 * 60.00888 * 3 2 1 31 31 H 1.08998 * 109.47446 * 300.00319 * 3 2 1 32 32 H 1.09004 * 109.47373 * 305.00288 * 4 3 2 33 33 H 1.09007 * 109.47038 * 185.00491 * 4 3 2 34 34 H 0.97001 * 120.00026 * 185.01376 * 9 8 6 35 35 H 1.08001 * 120.03451 * 359.95840 * 17 16 14 36 36 H 1.08004 * 119.76940 * 180.02562 * 22 18 17 37 37 H 1.08003 * 119.96744 * 180.02562 * 23 22 18 38 38 H 1.08994 * 109.47096 * 299.99983 * 26 25 24 39 39 H 1.08994 * 109.47245 * 60.00399 * 26 25 24 40 40 H 1.09001 * 109.46641 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5646 -1.2528 6 6 4.0935 -0.7606 -1.3347 7 1 3.8631 -1.2670 -2.2605 8 6 4.5365 -1.5317 -0.1669 9 7 4.2349 -2.7852 -0.0676 10 14 5.5358 -0.7021 1.1757 11 1 4.6296 -0.2617 2.2667 12 1 6.5314 -1.6620 1.7164 13 1 6.2407 0.4768 0.6113 14 6 4.2614 1.3340 -2.3219 15 8 4.2813 2.5442 -2.2116 16 6 4.5494 0.7086 -3.6228 17 6 5.2928 -0.4743 -3.6862 18 6 5.5581 -1.0542 -4.9063 19 7 6.3457 -2.3059 -4.9704 20 8 6.7044 -2.9158 -3.8596 21 8 6.6878 -2.8096 -6.1382 22 6 5.0916 -0.4725 -6.0759 23 6 4.3574 0.6938 -6.0319 24 6 4.0783 1.2957 -4.8099 25 16 3.1337 2.7819 -4.7492 26 6 2.8304 3.0337 -6.5158 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 1.6886 1.8464 0.8901 31 1 1.6885 1.8464 -0.8899 32 1 3.8515 0.5682 0.8409 33 1 3.9785 2.1766 0.0890 34 1 4.4641 -3.2770 0.7365 35 1 5.6586 -0.9322 -2.7790 36 1 5.3053 -0.9362 -7.0277 37 1 3.9978 1.1397 -6.9475 38 1 3.7822 3.1348 -7.0371 39 1 2.2857 2.1788 -6.9164 40 1 2.2400 3.9390 -6.6576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822287324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:12 Heat of formation + Delta-G solvation = -6.845185 kcal Electronic energy + Delta-G solvation = -28267.152620 eV Core-core repulsion = 24179.147119 eV Total energy + Delta-G solvation = -4088.005501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.69637 -40.45196 -39.13245 -38.45973 -36.80231 -35.52609 -34.31892 -33.22851 -33.04625 -30.87075 -29.78321 -27.82435 -27.25667 -26.80641 -25.07871 -24.04210 -23.32467 -21.35813 -20.19327 -19.25135 -18.90487 -18.32364 -18.09179 -17.63613 -17.13824 -16.99640 -16.56322 -16.49767 -16.32221 -15.98273 -15.67728 -15.32431 -15.19803 -14.74396 -14.58855 -14.38556 -13.87263 -13.84335 -13.68305 -13.27634 -13.14498 -13.10788 -13.01933 -12.65363 -12.49976 -12.39365 -12.21134 -12.02131 -11.85507 -11.77706 -11.51696 -11.29454 -11.05824 -10.59861 -10.45594 -10.34937 -9.91368 -8.61519 -8.59208 -5.84471 -1.82627 -0.35908 -0.04548 0.07191 0.42808 1.14134 1.28021 1.35947 1.38208 1.67081 2.09947 2.24392 2.45818 2.83164 3.05735 3.35212 3.49873 3.74292 3.77049 4.02410 4.11092 4.13846 4.28737 4.32478 4.35948 4.37166 4.45956 4.53119 4.54850 4.60833 4.67518 4.71076 4.74790 4.83128 4.86607 4.93454 5.16682 5.28232 5.66593 5.93805 6.17434 6.38400 6.76138 7.37737 7.78180 8.47560 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.008783 B = 0.006246 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3187.202547 B = 4481.919303 C = 6580.937535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.395 6.395 3 C 0.062 3.938 4 C 0.087 3.913 5 N -0.411 5.411 6 C -0.389 4.389 7 H 0.076 0.924 8 C 0.056 3.944 9 N -0.835 5.835 10 Si 0.920 3.080 11 H -0.249 1.249 12 H -0.280 1.280 13 H -0.261 1.261 14 C 0.482 3.518 15 O -0.596 6.596 16 C -0.114 4.114 17 C 0.011 3.989 18 C -0.051 4.051 19 N -0.003 5.003 20 O -0.256 6.256 21 O -0.152 6.152 22 C -0.008 4.008 23 C -0.134 4.134 24 C -0.013 4.013 25 S -0.043 6.043 26 C -0.179 4.179 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.291 0.709 35 H 0.156 0.844 36 H 0.190 0.810 37 H 0.201 0.799 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.115 10.624 -9.739 15.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.314 6.314 3 C -0.016 4.016 4 C -0.035 4.035 5 N -0.125 5.125 6 C -0.518 4.518 7 H 0.094 0.906 8 C -0.160 4.160 9 N -0.464 5.464 10 Si 0.744 3.256 11 H -0.175 1.175 12 H -0.207 1.207 13 H -0.186 1.186 14 C 0.273 3.727 15 O -0.485 6.485 16 C -0.124 4.124 17 C -0.012 4.012 18 C -0.142 4.142 19 N 0.468 4.532 20 O -0.429 6.429 21 O -0.357 6.357 22 C -0.030 4.030 23 C -0.158 4.158 24 C -0.130 4.130 25 S 0.206 5.794 26 C -0.347 4.347 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.173 0.827 36 H 0.207 0.793 37 H 0.218 0.782 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.775 12.169 -8.435 16.283 hybrid contribution 0.972 -1.558 0.198 1.847 sum -5.803 10.610 -8.236 14.632 Atomic orbital electron populations 1.22840 0.80617 1.02951 1.00431 1.88172 1.20462 1.27469 1.95337 1.22791 0.92822 0.85183 1.00791 1.22027 0.94508 0.99283 0.87708 1.42353 1.53789 1.06276 1.10096 1.19448 1.50804 0.80871 1.00627 0.90623 1.27322 0.95011 0.94574 0.99076 1.68731 1.38120 1.10994 1.28598 0.86274 0.79707 0.79572 0.80027 1.17501 1.20690 1.18562 1.17866 0.83213 0.86301 0.85287 1.90606 1.59269 1.13558 1.85038 1.19445 1.02972 0.95890 0.94107 1.21688 0.90397 0.91527 0.97556 1.20464 1.07618 0.88370 0.97699 1.50650 0.97947 1.02488 1.02114 1.96377 1.63431 1.63950 1.19125 1.96129 1.58612 1.69461 1.11497 1.21384 0.91251 0.93371 0.97037 1.21562 1.01342 0.95596 0.97322 1.22863 0.96163 0.98823 0.95150 1.87026 1.59035 1.22120 1.11227 1.24194 1.07683 1.08336 0.94458 0.89819 0.92510 0.94005 0.90227 0.93744 0.91531 0.88340 0.89752 0.82681 0.79292 0.78208 0.87318 0.87619 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.40 -16.20 10.15 -148.98 -1.51 -17.72 16 3 C 0.06 2.27 6.28 71.98 0.45 2.72 16 4 C 0.09 3.66 4.76 86.38 0.41 4.08 16 5 N -0.41 -19.47 2.19 -634.64 -1.39 -20.86 16 6 C -0.39 -20.26 6.82 86.71 0.59 -19.67 16 7 H 0.08 4.32 5.92 -2.91 -0.02 4.31 16 8 C 0.06 2.95 5.47 87.30 0.48 3.43 16 9 N -0.84 -45.80 13.87 23.26 0.32 -45.48 16 10 Si 0.92 40.96 25.15 68.60 1.73 42.68 16 11 H -0.25 -10.22 6.75 99.48 0.67 -9.55 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 13 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 14 C 0.48 22.00 6.96 86.59 0.60 22.60 16 15 O -0.60 -27.72 14.62 -3.83 -0.06 -27.78 16 16 C -0.11 -4.63 5.40 -19.97 -0.11 -4.73 16 17 C 0.01 0.46 7.14 22.53 0.16 0.62 16 18 C -0.05 -1.86 6.87 36.35 0.25 -1.61 16 19 N 0.00 -0.12 4.99 -46.51 -0.23 -0.35 16 20 O -0.26 -12.54 19.14 3.52 0.07 -12.47 16 21 O -0.15 -5.65 19.14 3.51 0.07 -5.59 16 22 C -0.01 -0.21 9.56 22.30 0.21 0.00 16 23 C -0.13 -2.97 9.17 22.38 0.21 -2.76 16 24 C -0.01 -0.41 6.15 23.03 0.14 -0.26 16 25 S -0.04 -1.18 20.38 -56.49 -1.15 -2.33 16 26 C -0.18 -2.22 8.98 113.37 1.02 -1.20 16 27 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 2.89 3.03 -2.38 -0.01 2.88 16 33 H 0.10 3.91 7.34 -2.38 -0.02 3.89 16 34 H 0.29 14.68 8.27 -92.71 -0.77 13.91 16 35 H 0.16 7.71 5.38 -2.91 -0.02 7.69 16 36 H 0.19 3.45 7.57 -2.91 -0.02 3.42 16 37 H 0.20 2.31 5.50 -2.91 -0.02 2.29 16 38 H 0.11 0.97 7.55 -2.40 -0.02 0.96 16 39 H 0.11 0.97 7.53 -2.40 -0.02 0.95 16 40 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -71.17 352.11 4.58 -66.59 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 1.07 Total: 18.02 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 5.66 Total: 5.27 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -1.30 Total: -66.69 kcal Atomic # 8 Polarization: -62.12 SS G_CDS: -1.43 Total: -63.55 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.73 Total: 42.68 kcal Atomic # 16 Polarization: -1.18 SS G_CDS: -1.15 Total: -2.33 kcal Total: -71.17 4.58 -66.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822287324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.748 kcal (2) G-P(sol) polarization free energy of solvation -71.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds