Wall clock time and date at job start Sat Apr 11 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29828 * 119.99835 * 2 1 4 4 N 1.40094 * 120.00070 * 359.97438 * 3 2 1 5 5 C 1.34776 * 119.99780 * 180.02562 * 4 3 2 6 6 O 1.21312 * 120.00319 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.99768 * 180.02562 * 5 4 3 8 8 S 1.81404 * 109.47055 * 179.97438 * 7 5 4 9 9 C 1.81395 * 101.92304 * 179.97438 * 8 7 5 10 10 O 1.42099 * 108.57952 * 294.48736 * 8 7 5 11 11 O 1.42099 * 108.57714 * 65.51114 * 8 7 5 12 12 C 1.47353 * 119.99916 * 179.97438 * 2 1 3 13 13 C 1.39819 * 120.08832 * 179.97438 * 12 2 1 14 14 C 1.37708 * 119.91100 * 180.02562 * 13 12 2 15 15 C 1.39080 * 120.09196 * 0.02562 * 14 13 12 16 16 O 1.35651 * 119.91220 * 179.97438 * 15 14 13 17 17 C 1.34806 * 117.00534 * 5.54991 * 16 15 14 18 18 H 1.08002 * 119.99584 * 354.94801 * 17 16 15 19 19 C 1.38632 * 120.00484 * 174.94495 * 17 16 15 20 20 N 1.31558 * 120.00195 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99887 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47286 * 90.00361 * 21 19 17 23 23 H 1.48506 * 109.47167 * 210.00289 * 21 19 17 24 24 H 1.48495 * 109.47114 * 330.00165 * 21 19 17 25 25 C 1.39078 * 120.17427 * 0.23285 * 15 14 13 26 26 C 1.37722 * 120.08653 * 359.48686 * 25 15 14 27 27 H 1.08997 * 109.47495 * 269.99917 * 1 2 3 28 28 H 1.08999 * 109.46867 * 30.00305 * 1 2 3 29 29 H 1.08997 * 109.47208 * 150.00237 * 1 2 3 30 30 H 0.97005 * 120.00132 * 359.97438 * 4 3 2 31 31 H 1.08993 * 109.46957 * 299.99417 * 7 5 4 32 32 H 1.09000 * 109.47076 * 59.99697 * 7 5 4 33 33 H 1.09006 * 109.47119 * 60.00063 * 9 8 7 34 34 H 1.08992 * 109.47314 * 180.02562 * 9 8 7 35 35 H 1.09002 * 109.47203 * 300.00789 * 9 8 7 36 36 H 1.07996 * 120.04038 * 0.02562 * 13 12 2 37 37 H 1.08004 * 119.95437 * 180.02562 * 14 13 12 38 38 H 0.97001 * 120.00246 * 179.97438 * 20 19 17 39 39 H 1.07998 * 119.95568 * 179.74621 * 25 15 14 40 40 H 1.07991 * 120.04358 * 180.25556 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1561 1.1244 0.0000 4 7 1.4556 2.3376 -0.0005 5 6 2.1295 3.5048 -0.0011 6 8 3.3427 3.5048 -0.0006 7 6 1.3760 4.8099 -0.0011 8 16 2.5548 6.1887 -0.0011 9 6 1.4493 7.6269 -0.0019 10 8 3.2734 6.1701 1.2247 11 8 3.2734 6.1700 -1.2268 12 6 2.2438 -1.2761 0.0006 13 6 3.6420 -1.2783 0.0000 14 6 4.3268 -2.4730 0.0000 15 6 3.6296 -3.6764 0.0000 16 8 4.3079 -4.8512 -0.0005 17 6 5.6493 -4.7836 0.1152 18 1 6.1430 -3.8230 0.1207 19 6 6.3950 -5.9469 0.2271 20 7 7.7040 -5.8808 0.3405 21 14 5.5409 -7.6082 0.2184 22 1 5.4371 -8.1042 -1.1774 23 1 6.3265 -8.5729 1.0294 24 1 4.1803 -7.4683 0.7966 25 6 2.2388 -3.6786 -0.0049 26 6 1.5465 -2.4880 0.0010 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 0.4856 2.3376 -0.0013 31 1 0.7491 4.8675 -0.8908 32 1 0.7496 4.8678 0.8891 33 1 0.8202 7.6021 0.8880 34 1 2.0426 8.5412 -0.0024 35 1 0.8207 7.6015 -0.8920 36 1 4.1841 -0.3443 -0.0004 37 1 5.4068 -2.4755 0.0000 38 1 8.2257 -6.6947 0.4192 39 1 1.7010 -4.6151 -0.0090 40 1 0.4666 -2.4905 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863188986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:28 Heat of formation + Delta-G solvation = -50.755444 kcal Electronic energy + Delta-G solvation = -25698.097600 eV Core-core repulsion = 21608.188008 eV Total energy + Delta-G solvation = -4089.909592 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -39.98165 -39.32780 -37.75108 -37.31975 -36.34635 -36.15222 -33.26523 -32.47447 -31.19641 -30.57369 -29.93664 -28.57895 -28.27319 -25.47856 -22.69745 -22.04305 -21.08876 -19.87630 -19.16488 -18.11392 -17.96567 -17.35542 -17.13334 -16.73426 -16.27576 -16.16088 -15.52568 -15.09833 -14.68642 -14.35027 -14.28040 -14.07446 -13.98377 -13.85132 -13.77940 -13.73215 -13.22294 -12.84171 -12.64640 -12.41327 -12.36233 -12.29843 -12.17620 -11.95890 -11.59735 -11.41461 -11.32794 -11.25984 -10.92380 -10.83500 -10.55072 -10.25767 -10.04450 -9.46074 -9.25572 -8.82710 -8.39859 -7.29120 -6.53588 -4.18509 -0.58199 1.17509 2.08411 2.17265 2.21220 2.28116 2.85316 3.17175 3.19088 3.32255 3.33769 3.53901 3.94583 4.11986 4.13513 4.25464 4.43545 4.47753 4.52683 4.54882 4.68600 4.78196 4.90840 5.00509 5.08761 5.21877 5.48274 5.60998 5.67127 5.90200 6.05456 6.20765 6.40025 6.70817 6.77106 6.93276 7.01266 7.20614 7.35675 7.46051 7.69796 7.90251 8.24711 8.79511 9.38818 10.52756 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.022950 B = 0.001950 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.741917 B =14355.451524 C =15386.735237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.177 3.823 3 N -0.264 5.264 4 N -0.576 5.576 5 C 0.555 3.445 6 O -0.493 6.493 7 C -0.659 4.659 8 S 2.456 3.544 9 C -0.662 4.662 10 O -0.917 6.917 11 O -0.917 6.917 12 C -0.160 4.160 13 C -0.021 4.021 14 C -0.230 4.230 15 C 0.175 3.825 16 O -0.204 6.204 17 C -0.390 4.390 18 H 0.111 0.889 19 C 0.065 3.935 20 N -0.868 5.868 21 Si 0.907 3.093 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.258 1.258 25 C -0.198 4.198 26 C -0.043 4.043 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.382 0.618 31 H 0.161 0.839 32 H 0.161 0.839 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.138 0.862 38 H 0.282 0.718 39 H 0.122 0.878 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.869 21.288 -0.548 30.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.010 4.010 3 N -0.071 5.071 4 N -0.318 5.318 5 C 0.338 3.662 6 O -0.366 6.366 7 C -0.786 4.786 8 S 2.631 3.369 9 C -0.811 4.811 10 O -0.914 6.914 11 O -0.914 6.914 12 C -0.164 4.164 13 C -0.041 4.041 14 C -0.249 4.249 15 C 0.120 3.880 16 O -0.107 6.107 17 C -0.465 4.465 18 H 0.129 0.871 19 C -0.140 4.140 20 N -0.504 5.504 21 Si 0.732 3.268 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.182 1.182 25 C -0.218 4.218 26 C -0.064 4.064 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.221 0.779 31 H 0.179 0.821 32 H 0.179 0.821 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.156 0.844 38 H 0.093 0.907 39 H 0.140 0.860 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.100 21.454 -0.537 28.729 hybrid contribution -2.575 -0.803 -0.010 2.698 sum -21.675 20.651 -0.547 29.942 Atomic orbital electron populations 1.21363 0.92916 1.03834 1.03652 1.23392 0.93094 0.91808 0.92674 1.75403 1.22151 0.90135 1.19428 1.46640 1.08257 1.03599 1.73289 1.18817 0.87479 0.82654 0.77205 1.90908 1.12725 1.86431 1.46506 1.30960 1.20104 1.14105 1.13478 1.07244 0.76616 0.77125 0.75887 1.30397 1.17938 1.21230 1.11555 1.93620 1.66611 1.85295 1.45832 1.93619 1.66629 1.85297 1.45835 1.17674 0.92805 0.88754 1.17183 1.21083 0.92725 0.97769 0.92521 1.21261 1.01476 0.91472 1.10723 1.19340 0.91273 0.85704 0.91651 1.83520 1.22062 1.27068 1.78028 1.20875 0.77003 0.97253 1.51407 0.87130 1.24533 0.94860 0.99346 0.95270 1.69646 1.04551 1.30450 1.45719 0.86152 0.80274 0.81456 0.78882 1.19713 1.20621 1.18219 1.20076 0.91212 0.98108 1.12363 1.20690 0.98396 0.90613 0.96651 0.89599 0.91858 0.89041 0.77868 0.82128 0.82115 0.85186 0.84714 0.85188 0.85697 0.84435 0.90726 0.85968 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.03 36.01 0.33 -1.00 16 2 C 0.18 2.43 7.10 -79.73 -0.57 1.87 16 3 N -0.26 -4.16 10.15 35.10 0.36 -3.81 16 4 N -0.58 -6.81 6.11 31.22 0.19 -6.62 16 5 C 0.55 7.04 7.97 -10.98 -0.09 6.95 16 6 O -0.49 -9.04 15.96 2.53 0.04 -9.00 16 7 C -0.66 -3.55 6.29 36.01 0.23 -3.32 16 8 S 2.46 19.19 4.60 -107.50 -0.49 18.70 16 9 C -0.66 -1.33 10.62 101.05 1.07 -0.25 16 10 O -0.92 -11.48 17.95 -59.53 -1.07 -12.55 16 11 O -0.92 -11.47 17.95 -59.52 -1.07 -12.54 16 12 C -0.16 -2.63 5.87 -105.01 -0.62 -3.24 16 13 C -0.02 -0.40 9.57 -39.18 -0.37 -0.77 16 14 C -0.23 -4.93 9.15 -39.46 -0.36 -5.29 16 15 C 0.18 3.85 6.65 -38.96 -0.26 3.59 16 16 O -0.20 -5.14 8.58 0.42 0.00 -5.14 16 17 C -0.39 -10.66 9.94 30.88 0.31 -10.35 16 18 H 0.11 3.11 5.42 -52.49 -0.28 2.83 16 19 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 20 N -0.87 -24.48 13.96 55.48 0.77 -23.71 16 21 Si 0.91 20.85 28.62 -169.99 -4.86 15.99 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 25 C -0.20 -3.57 9.97 -39.46 -0.39 -3.96 16 26 C -0.04 -0.65 9.35 -39.18 -0.37 -1.01 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.39 6.35 -51.93 -0.33 0.06 16 29 H 0.09 0.67 6.47 -51.93 -0.34 0.34 16 30 H 0.38 2.74 6.43 -182.60 -1.17 1.56 16 31 H 0.16 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.16 0.18 8.14 -51.92 -0.42 -0.24 16 33 H 0.13 -0.03 8.14 -51.92 -0.42 -0.46 16 34 H 0.13 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.13 -0.03 8.14 -51.92 -0.42 -0.46 16 36 H 0.13 2.41 7.55 -52.49 -0.40 2.01 16 37 H 0.14 3.12 5.62 -52.48 -0.29 2.83 16 38 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 40 H 0.12 1.31 6.35 -52.49 -0.33 0.98 16 LS Contribution 361.60 15.07 5.45 5.45 Total: -1.00 -40.54 361.60 -7.11 -47.66 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.24 Total: 0.70 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -1.19 Total: -15.12 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 1.32 Total: -34.14 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -2.09 Total: -39.23 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.86 Total: 15.99 kcal Atomic # 16 Polarization: 19.19 SS G_CDS: -0.49 Total: 18.70 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -40.54 -7.11 -47.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863188986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.099 kcal (2) G-P(sol) polarization free energy of solvation -40.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds