Wall clock time and date at job start Sat Apr 11 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29828 * 119.99835 * 2 1 4 4 N 1.40094 * 120.00070 * 359.97438 * 3 2 1 5 5 C 1.34776 * 119.99780 * 180.02562 * 4 3 2 6 6 O 1.21312 * 120.00319 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.99768 * 180.02562 * 5 4 3 8 8 S 1.81404 * 109.47055 * 179.97438 * 7 5 4 9 9 C 1.81395 * 101.92304 * 179.97438 * 8 7 5 10 10 O 1.42099 * 108.57952 * 294.48736 * 8 7 5 11 11 O 1.42099 * 108.57714 * 65.51114 * 8 7 5 12 12 C 1.47353 * 119.99916 * 179.97438 * 2 1 3 13 13 C 1.39819 * 120.08832 * 179.97438 * 12 2 1 14 14 C 1.37708 * 119.91100 * 180.02562 * 13 12 2 15 15 C 1.39080 * 120.09196 * 0.02562 * 14 13 12 16 16 O 1.35651 * 119.91220 * 179.97438 * 15 14 13 17 17 C 1.34806 * 117.00534 * 5.54991 * 16 15 14 18 18 H 1.08002 * 119.99584 * 354.94801 * 17 16 15 19 19 C 1.38632 * 120.00484 * 174.94495 * 17 16 15 20 20 N 1.31558 * 120.00195 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99887 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47286 * 90.00361 * 21 19 17 23 23 H 1.48506 * 109.47167 * 210.00289 * 21 19 17 24 24 H 1.48495 * 109.47114 * 330.00165 * 21 19 17 25 25 C 1.39078 * 120.17427 * 0.23285 * 15 14 13 26 26 C 1.37722 * 120.08653 * 359.48686 * 25 15 14 27 27 H 1.08997 * 109.47495 * 269.99917 * 1 2 3 28 28 H 1.08999 * 109.46867 * 30.00305 * 1 2 3 29 29 H 1.08997 * 109.47208 * 150.00237 * 1 2 3 30 30 H 0.97005 * 120.00132 * 359.97438 * 4 3 2 31 31 H 1.08993 * 109.46957 * 299.99417 * 7 5 4 32 32 H 1.09000 * 109.47076 * 59.99697 * 7 5 4 33 33 H 1.09006 * 109.47119 * 60.00063 * 9 8 7 34 34 H 1.08992 * 109.47314 * 180.02562 * 9 8 7 35 35 H 1.09002 * 109.47203 * 300.00789 * 9 8 7 36 36 H 1.07996 * 120.04038 * 0.02562 * 13 12 2 37 37 H 1.08004 * 119.95437 * 180.02562 * 14 13 12 38 38 H 0.97001 * 120.00246 * 179.97438 * 20 19 17 39 39 H 1.07998 * 119.95568 * 179.74621 * 25 15 14 40 40 H 1.07991 * 120.04358 * 180.25556 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1561 1.1244 0.0000 4 7 1.4556 2.3376 -0.0005 5 6 2.1295 3.5048 -0.0011 6 8 3.3427 3.5048 -0.0006 7 6 1.3760 4.8099 -0.0011 8 16 2.5548 6.1887 -0.0011 9 6 1.4493 7.6269 -0.0019 10 8 3.2734 6.1701 1.2247 11 8 3.2734 6.1700 -1.2268 12 6 2.2438 -1.2761 0.0006 13 6 3.6420 -1.2783 0.0000 14 6 4.3268 -2.4730 0.0000 15 6 3.6296 -3.6764 0.0000 16 8 4.3079 -4.8512 -0.0005 17 6 5.6493 -4.7836 0.1152 18 1 6.1430 -3.8230 0.1207 19 6 6.3950 -5.9469 0.2271 20 7 7.7040 -5.8808 0.3405 21 14 5.5409 -7.6082 0.2184 22 1 5.4371 -8.1042 -1.1774 23 1 6.3265 -8.5729 1.0294 24 1 4.1803 -7.4683 0.7966 25 6 2.2388 -3.6786 -0.0049 26 6 1.5465 -2.4880 0.0010 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 0.4856 2.3376 -0.0013 31 1 0.7491 4.8675 -0.8908 32 1 0.7496 4.8678 0.8891 33 1 0.8202 7.6021 0.8880 34 1 2.0426 8.5412 -0.0024 35 1 0.8207 7.6015 -0.8920 36 1 4.1841 -0.3443 -0.0004 37 1 5.4068 -2.4755 0.0000 38 1 8.2257 -6.6947 0.4192 39 1 1.7010 -4.6151 -0.0090 40 1 0.4666 -2.4905 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863188986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:28 Heat of formation + Delta-G solvation = -86.053303 kcal Electronic energy + Delta-G solvation = -25699.628230 eV Core-core repulsion = 21608.188008 eV Total energy + Delta-G solvation = -4091.440222 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.11373 -40.84792 -39.11642 -38.03043 -37.57925 -36.99935 -34.63457 -34.17703 -32.15716 -31.83671 -30.36744 -29.80873 -29.11981 -27.35646 -24.03116 -23.58173 -22.24918 -21.05778 -19.86632 -19.72395 -19.25937 -18.84695 -17.98845 -17.36619 -17.12192 -16.97046 -16.66125 -16.35798 -15.88225 -15.83865 -15.67397 -15.57144 -15.24162 -14.99163 -14.44220 -14.25144 -14.10351 -13.95902 -13.87631 -13.75455 -13.28561 -13.15190 -13.09592 -13.03868 -12.79355 -12.71548 -12.54508 -12.42890 -12.17789 -11.95195 -11.70138 -11.60676 -11.42090 -10.99092 -10.98055 -10.23541 -9.91210 -8.84004 -8.53356 -6.27237 -1.08368 -0.10412 0.54124 1.06528 1.32721 1.36417 1.37857 1.53269 1.72582 1.81470 2.26782 2.76915 2.77926 2.98251 3.07783 3.13733 3.31214 3.50256 3.87118 3.93123 4.05413 4.14597 4.15333 4.23044 4.29321 4.32753 4.45018 4.66263 4.69880 4.76289 4.91332 5.01482 5.15899 5.18772 5.32462 5.51700 5.58723 5.72222 5.82567 5.93724 6.12538 6.35632 6.78936 7.32749 7.48210 8.57887 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.022950 B = 0.001950 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.741917 B =14355.451524 C =15386.735237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.175 3.825 3 N -0.315 5.315 4 N -0.561 5.561 5 C 0.536 3.464 6 O -0.566 6.566 7 C -0.634 4.634 8 S 2.425 3.575 9 C -0.618 4.618 10 O -0.987 6.987 11 O -0.987 6.987 12 C -0.139 4.139 13 C -0.040 4.040 14 C -0.248 4.248 15 C 0.142 3.858 16 O -0.230 6.230 17 C -0.405 4.405 18 H 0.076 0.924 19 C 0.008 3.992 20 N -0.921 5.921 21 Si 0.978 3.022 22 H -0.264 1.264 23 H -0.269 1.269 24 H -0.254 1.254 25 C -0.188 4.188 26 C -0.020 4.020 27 H 0.110 0.890 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.410 0.590 31 H 0.216 0.784 32 H 0.216 0.784 33 H 0.168 0.832 34 H 0.140 0.860 35 H 0.168 0.832 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.286 0.714 39 H 0.150 0.850 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.694 23.089 -0.614 37.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.013 4.013 3 N -0.122 5.122 4 N -0.305 5.305 5 C 0.324 3.676 6 O -0.443 6.443 7 C -0.764 4.764 8 S 2.610 3.390 9 C -0.772 4.772 10 O -0.984 6.984 11 O -0.984 6.984 12 C -0.142 4.142 13 C -0.060 4.060 14 C -0.267 4.267 15 C 0.090 3.910 16 O -0.136 6.136 17 C -0.481 4.481 18 H 0.094 0.906 19 C -0.191 4.191 20 N -0.561 5.561 21 Si 0.799 3.201 22 H -0.189 1.189 23 H -0.194 1.194 24 H -0.178 1.178 25 C -0.207 4.207 26 C -0.040 4.040 27 H 0.128 0.872 28 H 0.108 0.892 29 H 0.130 0.870 30 H 0.254 0.746 31 H 0.233 0.767 32 H 0.233 0.767 33 H 0.186 0.814 34 H 0.158 0.842 35 H 0.186 0.814 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.167 0.833 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -26.954 23.278 -0.607 35.619 hybrid contribution -0.530 -0.819 -0.003 0.975 sum -27.484 22.459 -0.610 35.499 Atomic orbital electron populations 1.21536 0.87824 1.06274 1.05857 1.23531 0.96052 0.89778 0.91903 1.75282 1.25592 0.92248 1.19101 1.46483 1.09517 1.02068 1.72459 1.20197 0.87296 0.84836 0.75313 1.90897 1.16309 1.87673 1.49462 1.30841 1.19147 1.07680 1.18706 1.07499 0.78426 0.79596 0.73447 1.30051 1.16291 1.15562 1.15328 1.93540 1.70560 1.86857 1.47473 1.93539 1.70572 1.86857 1.47466 1.18164 0.91542 0.91561 1.12957 1.21080 0.94768 0.96151 0.94021 1.21157 1.00254 0.93021 1.12317 1.19923 0.93122 0.84877 0.93037 1.83473 1.20419 1.28175 1.81524 1.20702 0.78539 0.96339 1.52480 0.90603 1.25428 0.95485 1.03191 0.94991 1.69749 1.06068 1.31579 1.48671 0.85111 0.79118 0.76549 0.79286 1.18864 1.19373 1.17782 1.20559 0.89170 1.00681 1.10322 1.21287 1.01183 0.88262 0.93231 0.87174 0.89191 0.86990 0.74638 0.76733 0.76738 0.81430 0.84169 0.81428 0.87100 0.87857 0.90384 0.83265 0.79833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.03 71.24 0.64 -0.89 16 2 C 0.17 4.18 7.10 45.26 0.32 4.50 16 3 N -0.32 -9.45 10.15 -42.88 -0.44 -9.89 16 4 N -0.56 -11.50 6.11 -173.50 -1.06 -12.56 16 5 C 0.54 12.81 7.97 87.66 0.70 13.51 16 6 O -0.57 -21.89 15.96 -0.26 0.00 -21.90 16 7 C -0.63 -4.10 6.29 71.24 0.45 -3.65 16 8 S 2.43 35.42 4.60 -56.49 -0.26 35.16 16 9 C -0.62 0.80 10.62 113.37 1.20 2.00 16 10 O -0.99 -26.08 17.95 -125.74 -2.26 -28.33 16 11 O -0.99 -26.04 17.95 -125.76 -2.26 -28.30 16 12 C -0.14 -4.26 5.87 -20.11 -0.12 -4.38 16 13 C -0.04 -1.61 9.57 22.53 0.22 -1.39 16 14 C -0.25 -11.60 9.15 22.35 0.20 -11.39 16 15 C 0.14 6.47 6.65 22.67 0.15 6.62 16 16 O -0.23 -12.21 8.58 -21.40 -0.18 -12.39 16 17 C -0.40 -24.05 9.94 67.91 0.68 -23.37 16 18 H 0.08 4.85 5.42 -2.91 -0.02 4.84 16 19 C 0.01 0.47 5.49 84.83 0.47 0.93 16 20 N -0.92 -55.79 13.96 21.61 0.30 -55.49 16 21 Si 0.98 44.61 28.62 68.60 1.96 46.57 16 22 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.25 -11.23 7.11 99.48 0.71 -10.52 16 25 C -0.19 -6.33 9.97 22.35 0.22 -6.11 16 26 C -0.02 -0.51 9.35 22.53 0.21 -0.30 16 27 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.09 0.45 6.35 -2.39 -0.02 0.43 16 29 H 0.11 0.71 6.47 -2.39 -0.02 0.70 16 30 H 0.41 3.56 6.43 -213.32 -1.37 2.18 16 31 H 0.22 -0.99 8.14 -2.39 -0.02 -1.01 16 32 H 0.22 -0.98 8.14 -2.39 -0.02 -1.00 16 33 H 0.17 -1.30 8.14 -2.39 -0.02 -1.32 16 34 H 0.14 -0.08 8.14 -2.39 -0.02 -0.10 16 35 H 0.17 -1.30 8.14 -2.39 -0.02 -1.32 16 36 H 0.11 4.70 7.55 -2.91 -0.02 4.68 16 37 H 0.10 5.45 5.62 -2.91 -0.02 5.43 16 38 H 0.29 15.84 8.31 -92.71 -0.77 15.07 16 39 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 40 H 0.18 2.49 6.35 -2.92 -0.02 2.47 16 Total: -1.00 -108.15 361.60 0.88 -107.26 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -0.27 Total: 3.79 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: 5.34 Total: -23.93 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -1.19 Total: -77.94 kcal Atomic # 8 Polarization: -86.22 SS G_CDS: -4.70 Total: -90.92 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.96 Total: 46.57 kcal Atomic # 16 Polarization: 35.42 SS G_CDS: -0.26 Total: 35.16 kcal Total: -108.15 0.88 -107.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863188986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.209 kcal (2) G-P(sol) polarization free energy of solvation -108.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds