Wall clock time and date at job start Sat Apr 11 2020 05:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34633 * 116.99531 * 2 1 4 4 O 1.21507 * 120.00638 * 359.97438 * 3 2 1 5 5 N 1.34784 * 119.99746 * 179.72468 * 3 2 1 6 6 C 1.47065 * 136.05562 * 359.90312 * 5 3 2 7 7 C 1.53758 * 87.88780 * 152.96201 * 6 5 3 8 8 N 1.46501 * 114.26476 * 139.79114 * 7 6 5 9 9 S 1.65592 * 119.99859 * 121.36902 * 8 7 6 10 10 O 1.42104 * 106.40376 * 177.80087 * 9 8 7 11 11 O 1.42103 * 106.40405 * 310.71758 * 9 8 7 12 12 C 1.76204 * 107.22288 * 64.26043 * 9 8 7 13 13 C 1.37641 * 120.12779 * 244.37836 * 12 9 8 14 14 C 1.38610 * 120.24412 * 179.97438 * 13 12 9 15 15 C 1.38649 * 120.50331 * 0.02562 * 14 13 12 16 16 C 1.37598 * 120.25081 * 0.02586 * 15 14 13 17 17 C 1.40698 * 120.12695 * 64.09727 * 12 9 8 18 18 C 1.41395 * 120.24208 * 359.97438 * 17 12 9 19 19 H 1.08008 * 120.00462 * 332.57167 * 18 17 12 20 20 C 1.39951 * 120.00100 * 152.56755 * 18 17 12 21 21 N 1.30826 * 119.99602 * 345.90476 * 20 18 17 22 22 Si 1.86797 * 120.00317 * 165.90701 * 20 18 17 23 23 H 1.48502 * 109.47259 * 59.99689 * 22 20 18 24 24 H 1.48499 * 109.47078 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46833 * 300.00004 * 22 20 18 26 26 C 1.47068 * 136.05669 * 180.27557 * 5 3 2 27 27 H 1.09002 * 109.47295 * 60.00311 * 1 2 3 28 28 H 1.09002 * 109.46696 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46996 * 299.99820 * 1 2 3 30 30 H 1.08995 * 113.46847 * 267.69367 * 6 5 3 31 31 H 1.09001 * 113.46811 * 38.13773 * 6 5 3 32 32 H 1.08999 * 114.39632 * 272.67918 * 7 6 5 33 33 H 0.96998 * 119.99637 * 301.36512 * 8 7 6 34 34 H 1.08000 * 119.87503 * 359.97438 * 13 12 9 35 35 H 1.07998 * 119.74731 * 179.97438 * 14 13 12 36 36 H 1.08009 * 119.87333 * 179.97438 * 15 14 13 37 37 H 1.07999 * 120.12836 * 179.97438 * 16 15 14 38 38 H 0.96993 * 119.99943 * 179.97438 * 21 20 18 39 39 H 1.08999 * 113.46752 * 321.86452 * 26 5 3 40 40 H 1.08994 * 113.46761 * 92.30955 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2702 0.0056 6 6 4.5200 0.3065 0.0142 7 6 5.3771 1.3748 -0.6847 8 7 6.7582 1.4494 -0.2015 9 16 8.0167 1.2209 -1.2532 10 8 9.2075 1.4054 -0.5001 11 8 7.7282 0.0291 -1.9714 12 6 7.9614 2.5345 -2.4263 13 6 7.7190 2.2651 -3.7542 14 6 7.6744 3.2966 -4.6790 15 6 7.8734 4.6093 -4.2792 16 6 8.1183 4.9018 -2.9572 17 6 8.1589 3.8633 -2.0083 18 6 8.4022 4.1526 -0.6459 19 1 8.0199 3.4965 0.1222 20 6 9.1385 5.2891 -0.2924 21 7 9.8309 5.9282 -1.2000 22 14 9.1327 5.8935 1.4750 23 1 9.6660 4.8299 2.3637 24 1 9.9837 7.1053 1.5866 25 1 7.7431 6.2261 1.8798 26 6 4.4132 2.3449 0.0125 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.8699 0.0563 1.0157 31 1 4.3353 -0.5743 -0.6007 32 1 5.3005 1.3729 -1.7720 33 1 6.9353 1.6327 0.7344 34 1 7.5630 1.2463 -4.0766 35 1 7.4841 3.0761 -5.7189 36 1 7.8369 5.4051 -5.0085 37 1 8.2734 5.9249 -2.6481 38 1 10.3409 6.7161 -0.9552 39 1 4.1373 3.2005 -0.6038 40 1 4.7349 2.6319 1.0135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866986857.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:36 Heat of formation + Delta-G solvation = -88.274090 kcal Electronic energy + Delta-G solvation = -27820.897723 eV Core-core repulsion = 23729.361200 eV Total energy + Delta-G solvation = -4091.536523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.74584 -39.14551 -37.64678 -36.32653 -36.21769 -34.94033 -34.00454 -33.54120 -30.30007 -29.63040 -29.27014 -27.03937 -26.06674 -25.60695 -22.29465 -21.73249 -21.19495 -20.25765 -18.96386 -18.02837 -17.77349 -17.14969 -17.07951 -16.78046 -16.17470 -15.82217 -15.44529 -14.75737 -14.57439 -14.36479 -14.02535 -13.59092 -13.40949 -13.34850 -13.16908 -12.80997 -12.78325 -12.24736 -12.21629 -11.97318 -11.62081 -11.44641 -11.35378 -11.28433 -11.20481 -11.15114 -11.09530 -10.90080 -10.78710 -10.61233 -10.57599 -9.96802 -9.58159 -9.47430 -8.97928 -8.91967 -8.09640 -7.68006 -7.10710 -4.82962 1.34695 1.89879 2.28158 2.68898 2.74493 2.92725 2.94596 3.07793 3.64167 3.71372 3.90011 4.26178 4.34660 4.67075 4.79471 4.96635 4.97660 5.04940 5.16562 5.20398 5.31882 5.43713 5.49887 5.52064 5.60578 5.68657 6.00524 6.18615 6.18849 6.26179 6.37045 6.70161 6.88279 7.01967 7.22886 7.31697 7.44201 7.55447 7.59394 7.76235 7.82120 8.16293 8.22022 8.42216 8.59073 9.82425 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011369 B = 0.004057 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.261838 B = 6900.659034 C = 7536.542799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.369 6.369 3 C 0.680 3.320 4 O -0.571 6.571 5 N -0.632 5.632 6 C 0.088 3.912 7 C 0.134 3.866 8 N -1.105 6.105 9 S 2.698 3.302 10 O -0.959 6.959 11 O -0.993 6.993 12 C -0.779 4.779 13 C -0.003 4.003 14 C -0.249 4.249 15 C -0.076 4.076 16 C -0.158 4.158 17 C 0.187 3.813 18 C -0.446 4.446 19 H 0.087 0.913 20 C 0.081 3.919 21 N -0.771 5.771 22 Si 0.912 3.088 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.259 1.259 26 C 0.119 3.881 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.133 0.867 33 H 0.415 0.585 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.289 0.711 39 H 0.094 0.906 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.274 -6.084 3.897 12.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.283 6.283 3 C 0.436 3.564 4 O -0.460 6.460 5 N -0.375 5.375 6 C -0.037 4.037 7 C 0.023 3.977 8 N -0.858 5.858 9 S 2.796 3.204 10 O -0.950 6.950 11 O -0.983 6.983 12 C -0.875 4.875 13 C -0.023 4.023 14 C -0.270 4.270 15 C -0.095 4.095 16 C -0.178 4.178 17 C 0.183 3.817 18 C -0.474 4.474 19 H 0.105 0.895 20 C -0.141 4.141 21 N -0.394 5.394 22 Si 0.735 3.265 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.183 1.183 26 C -0.004 4.004 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.151 0.849 33 H 0.249 0.751 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.142 0.858 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.040 -6.384 3.746 12.473 hybrid contribution -0.274 1.206 0.757 1.450 sum -10.314 -5.177 4.503 12.388 Atomic orbital electron populations 1.23192 0.74486 1.03364 1.02710 1.86257 1.23946 1.30964 1.87149 1.17201 0.80966 0.82105 0.76171 1.91010 1.63394 1.35150 1.56495 1.47767 1.00498 1.13448 1.75781 1.23747 0.82868 0.95141 1.01958 1.22291 0.80524 0.95064 0.99788 1.55739 1.17529 1.89141 1.23437 1.01252 0.72174 0.73721 0.73281 1.93564 1.43207 1.87050 1.71149 1.93469 1.85113 1.46069 1.73662 1.29777 1.35769 1.12626 1.09298 1.20251 0.92621 0.97692 0.91770 1.20493 1.15365 0.93397 0.97733 1.20909 0.97165 0.95451 0.95927 1.21497 1.04243 0.99754 0.92318 1.16969 0.83129 0.88668 0.92965 1.19810 1.27994 1.07181 0.92388 0.89517 1.25957 0.92614 0.94971 1.00525 1.69775 1.18309 1.15237 1.36092 0.86256 0.79783 0.79085 0.81337 1.18025 1.19882 1.18273 1.23517 0.82415 0.92345 1.02097 0.91808 0.88005 0.91961 0.88854 0.89157 0.84927 0.75091 0.87371 0.88729 0.88816 0.85808 0.89952 0.88809 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.50 10.56 101.05 1.07 1.57 16 2 O -0.37 -4.65 10.59 -40.30 -0.43 -5.08 16 3 C 0.68 10.14 8.96 54.06 0.48 10.62 16 4 O -0.57 -10.10 16.91 -19.28 -0.33 -10.43 16 5 N -0.63 -8.43 3.69 -190.91 -0.70 -9.14 16 6 C 0.09 1.00 8.48 -8.36 -0.07 0.93 16 7 C 0.13 1.76 4.72 -67.67 -0.32 1.44 16 8 N -1.10 -16.28 4.90 -4.61 -0.02 -16.31 16 9 S 2.70 53.36 4.90 -107.50 -0.53 52.83 16 10 O -0.96 -22.10 16.63 -57.17 -0.95 -23.05 16 11 O -0.99 -20.50 16.75 -57.17 -0.96 -21.46 16 12 C -0.78 -17.30 5.92 -38.87 -0.23 -17.53 16 13 C 0.00 -0.07 9.53 -39.66 -0.38 -0.45 16 14 C -0.25 -5.22 10.05 -39.29 -0.39 -5.62 16 15 C -0.08 -1.63 10.02 -39.66 -0.40 -2.03 16 16 C -0.16 -3.74 8.67 -38.88 -0.34 -4.08 16 17 C 0.19 4.48 5.55 -106.83 -0.59 3.88 16 18 C -0.45 -10.39 7.70 -37.74 -0.29 -10.68 16 19 H 0.09 1.82 5.67 -52.48 -0.30 1.53 16 20 C 0.08 1.85 5.20 -17.34 -0.09 1.76 16 21 N -0.77 -18.20 10.92 55.55 0.61 -17.59 16 22 Si 0.91 16.93 29.58 -169.99 -5.03 11.90 16 23 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 24 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 25 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 26 C 0.12 1.51 8.41 -8.50 -0.07 1.44 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.13 1.80 8.06 -51.93 -0.42 1.38 16 33 H 0.42 5.16 8.68 -34.47 -0.30 4.86 16 34 H 0.11 2.12 7.33 -52.49 -0.38 1.73 16 35 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 37 H 0.12 2.96 6.22 -52.49 -0.33 2.63 16 38 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 39 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 357.30 15.07 5.38 5.38 Total: -1.00 -32.15 357.30 -9.24 -41.38 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -4.66 Total: 10.31 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -1.62 Total: -18.75 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -0.12 Total: -43.04 kcal Atomic # 8 Polarization: -57.36 SS G_CDS: -2.66 Total: -60.02 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Atomic # 16 Polarization: 53.36 SS G_CDS: -0.53 Total: 52.83 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.15 -9.24 -41.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866986857.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.889 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds