Wall clock time and date at job start Sat Apr 11 2020 05:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34633 * 116.99531 * 2 1 4 4 O 1.21507 * 120.00638 * 359.97438 * 3 2 1 5 5 N 1.34784 * 119.99746 * 179.72468 * 3 2 1 6 6 C 1.47065 * 136.05562 * 359.90312 * 5 3 2 7 7 C 1.53758 * 87.88780 * 152.96201 * 6 5 3 8 8 N 1.46501 * 114.26476 * 139.79114 * 7 6 5 9 9 S 1.65592 * 119.99859 * 121.36902 * 8 7 6 10 10 O 1.42104 * 106.40376 * 177.80087 * 9 8 7 11 11 O 1.42103 * 106.40405 * 310.71758 * 9 8 7 12 12 C 1.76204 * 107.22288 * 64.26043 * 9 8 7 13 13 C 1.37641 * 120.12779 * 244.37836 * 12 9 8 14 14 C 1.38610 * 120.24412 * 179.97438 * 13 12 9 15 15 C 1.38649 * 120.50331 * 0.02562 * 14 13 12 16 16 C 1.37598 * 120.25081 * 0.02586 * 15 14 13 17 17 C 1.40698 * 120.12695 * 64.09727 * 12 9 8 18 18 C 1.41395 * 120.24208 * 359.97438 * 17 12 9 19 19 H 1.08008 * 120.00462 * 332.57167 * 18 17 12 20 20 C 1.39951 * 120.00100 * 152.56755 * 18 17 12 21 21 N 1.30826 * 119.99602 * 345.90476 * 20 18 17 22 22 Si 1.86797 * 120.00317 * 165.90701 * 20 18 17 23 23 H 1.48502 * 109.47259 * 59.99689 * 22 20 18 24 24 H 1.48499 * 109.47078 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46833 * 300.00004 * 22 20 18 26 26 C 1.47068 * 136.05669 * 180.27557 * 5 3 2 27 27 H 1.09002 * 109.47295 * 60.00311 * 1 2 3 28 28 H 1.09002 * 109.46696 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46996 * 299.99820 * 1 2 3 30 30 H 1.08995 * 113.46847 * 267.69367 * 6 5 3 31 31 H 1.09001 * 113.46811 * 38.13773 * 6 5 3 32 32 H 1.08999 * 114.39632 * 272.67918 * 7 6 5 33 33 H 0.96998 * 119.99637 * 301.36512 * 8 7 6 34 34 H 1.08000 * 119.87503 * 359.97438 * 13 12 9 35 35 H 1.07998 * 119.74731 * 179.97438 * 14 13 12 36 36 H 1.08009 * 119.87333 * 179.97438 * 15 14 13 37 37 H 1.07999 * 120.12836 * 179.97438 * 16 15 14 38 38 H 0.96993 * 119.99943 * 179.97438 * 21 20 18 39 39 H 1.08999 * 113.46752 * 321.86452 * 26 5 3 40 40 H 1.08994 * 113.46761 * 92.30955 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2702 0.0056 6 6 4.5200 0.3065 0.0142 7 6 5.3771 1.3748 -0.6847 8 7 6.7582 1.4494 -0.2015 9 16 8.0167 1.2209 -1.2532 10 8 9.2075 1.4054 -0.5001 11 8 7.7282 0.0291 -1.9714 12 6 7.9614 2.5345 -2.4263 13 6 7.7190 2.2651 -3.7542 14 6 7.6744 3.2966 -4.6790 15 6 7.8734 4.6093 -4.2792 16 6 8.1183 4.9018 -2.9572 17 6 8.1589 3.8633 -2.0083 18 6 8.4022 4.1526 -0.6459 19 1 8.0199 3.4965 0.1222 20 6 9.1385 5.2891 -0.2924 21 7 9.8309 5.9282 -1.2000 22 14 9.1327 5.8935 1.4750 23 1 9.6660 4.8299 2.3637 24 1 9.9837 7.1053 1.5866 25 1 7.7431 6.2261 1.8798 26 6 4.4132 2.3449 0.0125 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.8699 0.0563 1.0157 31 1 4.3353 -0.5743 -0.6007 32 1 5.3005 1.3729 -1.7720 33 1 6.9353 1.6327 0.7344 34 1 7.5630 1.2463 -4.0766 35 1 7.4841 3.0761 -5.7189 36 1 7.8369 5.4051 -5.0085 37 1 8.2734 5.9249 -2.6481 38 1 10.3409 6.7161 -0.9552 39 1 4.1373 3.2005 -0.6038 40 1 4.7349 2.6319 1.0135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866986857.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:36 Heat of formation + Delta-G solvation = -111.555499 kcal Electronic energy + Delta-G solvation = -27821.907281 eV Core-core repulsion = 23729.361200 eV Total energy + Delta-G solvation = -4092.546081 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.79831 -40.17977 -39.33347 -37.97779 -37.31734 -36.62439 -35.66616 -34.78981 -31.99638 -31.32302 -30.31130 -27.88694 -27.31080 -27.01622 -23.42074 -23.40543 -22.87627 -21.29646 -20.40442 -19.46952 -19.07245 -18.55570 -18.19440 -17.95087 -17.69564 -17.14356 -16.93833 -16.09048 -16.00388 -15.66068 -15.12473 -15.06600 -14.91605 -14.55934 -14.43191 -14.36966 -13.76681 -13.61741 -13.33285 -13.22916 -13.02304 -12.96108 -12.89793 -12.80935 -12.77508 -12.71405 -12.45751 -12.40221 -12.13581 -11.82853 -11.79517 -11.62953 -11.12428 -11.10238 -10.29179 -9.97456 -9.80376 -9.41135 -8.77421 -6.57292 -0.18663 0.57510 0.90101 1.01937 1.41583 1.52387 1.57409 1.62963 2.18531 2.33587 2.66472 2.83648 3.00313 3.33026 3.52504 3.74408 3.89247 3.99278 4.24861 4.32912 4.35350 4.36453 4.41134 4.53059 4.57289 4.57323 4.68930 4.73476 4.75790 4.99948 5.17574 5.19176 5.23129 5.34454 5.55675 5.74531 5.85139 6.05050 6.10670 6.19540 6.50565 6.51437 6.70198 6.88247 7.08035 8.18691 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011369 B = 0.004057 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.261838 B = 6900.659034 C = 7536.542799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.371 6.371 3 C 0.676 3.324 4 O -0.608 6.608 5 N -0.634 5.634 6 C 0.097 3.903 7 C 0.125 3.875 8 N -1.089 6.089 9 S 2.725 3.275 10 O -0.994 6.994 11 O -1.001 7.001 12 C -0.795 4.795 13 C -0.014 4.014 14 C -0.255 4.255 15 C -0.078 4.078 16 C -0.189 4.189 17 C 0.164 3.836 18 C -0.472 4.472 19 H 0.101 0.899 20 C 0.040 3.960 21 N -0.807 5.807 22 Si 0.973 3.027 23 H -0.256 1.256 24 H -0.270 1.270 25 H -0.245 1.245 26 C 0.117 3.883 27 H 0.060 0.940 28 H 0.139 0.861 29 H 0.062 0.938 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.126 0.874 33 H 0.428 0.572 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.295 0.705 39 H 0.082 0.918 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.281 -7.292 4.865 14.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.284 6.284 3 C 0.432 3.568 4 O -0.500 6.500 5 N -0.376 5.376 6 C -0.027 4.027 7 C 0.016 3.984 8 N -0.847 5.847 9 S 2.820 3.180 10 O -0.984 6.984 11 O -0.991 6.991 12 C -0.889 4.889 13 C -0.034 4.034 14 C -0.275 4.275 15 C -0.096 4.096 16 C -0.209 4.209 17 C 0.160 3.840 18 C -0.500 4.500 19 H 0.119 0.881 20 C -0.179 4.179 21 N -0.431 5.431 22 Si 0.793 3.207 23 H -0.180 1.180 24 H -0.194 1.194 25 H -0.168 1.168 26 C -0.006 4.006 27 H 0.079 0.921 28 H 0.157 0.843 29 H 0.081 0.919 30 H 0.138 0.862 31 H 0.119 0.881 32 H 0.144 0.856 33 H 0.266 0.734 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.043 -7.601 4.689 14.203 hybrid contribution -0.033 1.491 0.353 1.533 sum -11.076 -6.110 5.043 13.617 Atomic orbital electron populations 1.23540 0.72556 1.05755 1.02606 1.86268 1.25833 1.29559 1.86727 1.17382 0.81266 0.82299 0.75870 1.90979 1.64293 1.36457 1.58253 1.47794 1.00444 1.14279 1.75111 1.23841 0.81093 0.94421 1.03348 1.22391 0.79510 0.96734 0.99786 1.55198 1.17230 1.88946 1.23349 1.00351 0.72031 0.72813 0.72792 1.93514 1.45831 1.87311 1.71749 1.93453 1.85369 1.46041 1.74215 1.30176 1.35109 1.12958 1.10636 1.20587 0.92270 0.98765 0.91748 1.20867 1.14459 0.92975 0.99186 1.21223 0.96001 0.96689 0.95710 1.21562 1.06315 0.99435 0.93539 1.17272 0.83704 0.89407 0.93622 1.20170 1.28775 1.08312 0.92724 0.88080 1.26833 0.91885 0.94806 1.04352 1.69834 1.19271 1.15943 1.38037 0.85352 0.80454 0.78531 0.76381 1.17975 1.19415 1.16799 1.23600 0.82064 0.91871 1.03016 0.92140 0.84336 0.91937 0.86195 0.88075 0.85584 0.73435 0.85711 0.85879 0.86501 0.87054 0.89446 0.89990 0.86430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.78 10.56 113.37 1.20 1.97 16 2 O -0.37 -8.67 10.59 -55.42 -0.59 -9.25 16 3 C 0.68 19.36 8.96 129.79 1.16 20.52 16 4 O -0.61 -21.29 16.91 19.82 0.34 -20.96 16 5 N -0.63 -15.80 3.69 -988.33 -3.64 -19.44 16 6 C 0.10 1.93 8.48 83.27 0.71 2.64 16 7 C 0.13 3.08 4.72 45.55 0.21 3.30 16 8 N -1.09 -30.29 4.90 -168.48 -0.83 -31.12 16 9 S 2.72 105.47 4.90 -56.49 -0.28 105.19 16 10 O -0.99 -45.44 16.63 -128.00 -2.13 -47.57 16 11 O -1.00 -39.93 16.75 -128.00 -2.14 -42.08 16 12 C -0.80 -35.25 5.92 22.73 0.13 -35.12 16 13 C -0.01 -0.59 9.53 22.22 0.21 -0.38 16 14 C -0.25 -10.38 10.05 22.46 0.23 -10.16 16 15 C -0.08 -3.33 10.02 22.22 0.22 -3.11 16 16 C -0.19 -9.10 8.67 22.73 0.20 -8.91 16 17 C 0.16 7.96 5.55 -21.29 -0.12 7.84 16 18 C -0.47 -22.16 7.70 23.46 0.18 -21.98 16 19 H 0.10 4.22 5.67 -2.91 -0.02 4.20 16 20 C 0.04 1.82 5.20 85.26 0.44 2.26 16 21 N -0.81 -38.97 10.92 21.83 0.24 -38.73 16 22 Si 0.97 34.22 29.58 68.60 2.03 36.25 16 23 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 24 H -0.27 -9.17 7.11 99.48 0.71 -8.47 16 25 H -0.24 -7.97 7.11 99.48 0.71 -7.26 16 26 C 0.12 2.80 8.41 83.18 0.70 3.50 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.13 3.29 8.06 -2.39 -0.02 3.27 16 33 H 0.43 9.72 8.68 -96.75 -0.84 8.88 16 34 H 0.13 4.72 7.33 -2.91 -0.02 4.70 16 35 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 36 H 0.12 4.33 8.06 -2.91 -0.02 4.30 16 37 H 0.11 5.54 6.22 -2.91 -0.02 5.52 16 38 H 0.29 12.84 8.30 -92.71 -0.77 12.07 16 39 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -69.71 357.30 -1.27 -70.98 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: 0.25 Total: 34.34 kcal Atomic # 6 Polarization: -43.09 SS G_CDS: 5.48 Total: -37.62 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -4.23 Total: -89.29 kcal Atomic # 8 Polarization: -115.34 SS G_CDS: -4.52 Total: -119.86 kcal Atomic # 14 Polarization: 34.22 SS G_CDS: 2.03 Total: 36.25 kcal Atomic # 16 Polarization: 105.47 SS G_CDS: -0.28 Total: 105.19 kcal Total: -69.71 -1.27 -70.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866986857.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.573 kcal (2) G-P(sol) polarization free energy of solvation -69.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds