Wall clock time and date at job start Sat Apr 11 2020 05:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 O 1.45206 * 109.47226 * 239.99460 * 2 1 3 5 5 C 1.34878 * 116.99415 * 90.00028 * 4 2 1 6 6 O 1.21609 * 120.00181 * 0.02562 * 5 4 2 7 7 C 1.46557 * 119.99808 * 180.02562 * 5 4 2 8 8 C 1.34967 * 125.05860 * 180.02562 * 7 5 4 9 9 C 1.38880 * 113.64402 * 179.97438 * 8 7 5 10 10 C 1.47348 * 122.95702 * 180.02562 * 9 8 7 11 11 N 1.34771 * 119.99965 * 179.97438 * 10 9 8 12 12 O 1.21617 * 119.99696 * 0.02562 * 10 9 8 13 13 C 1.36699 * 114.08698 * 359.97438 * 9 8 7 14 14 S 1.70598 * 110.53680 * 359.76811 * 13 9 8 15 15 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 16 16 O 1.21283 * 120.00236 * 114.99716 * 15 2 1 17 17 N 1.34774 * 119.99861 * 294.99892 * 15 2 1 18 18 C 1.46507 * 120.00108 * 359.97438 * 17 15 2 19 19 C 1.46496 * 120.00367 * 180.02562 * 17 15 2 20 20 C 1.50695 * 109.47370 * 89.99805 * 19 17 15 21 21 H 1.08005 * 120.00163 * 0.02562 * 20 19 17 22 22 C 1.37882 * 120.00369 * 180.02562 * 20 19 17 23 23 N 1.31512 * 119.99460 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00346 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47115 * 59.99425 * 24 22 20 26 26 H 1.48496 * 109.47344 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47009 * 299.99602 * 24 22 20 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.07999 * 123.18143 * 359.97438 * 8 7 5 32 32 H 0.97000 * 120.00539 * 0.02562 * 11 10 9 33 33 H 0.97006 * 120.00219 * 179.97438 * 11 10 9 34 34 H 1.07998 * 124.72932 * 180.02562 * 13 9 8 35 35 H 1.09002 * 109.47123 * 89.99538 * 18 17 15 36 36 H 1.08997 * 109.47369 * 209.99929 * 18 17 15 37 37 H 1.09002 * 109.47042 * 330.00239 * 18 17 15 38 38 H 1.09001 * 109.47223 * 209.99860 * 19 17 15 39 39 H 1.09007 * 109.46674 * 329.99720 * 19 17 15 40 40 H 0.96998 * 120.00028 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2181 0.0675 -2.2864 6 8 1.9977 1.2631 -2.2554 7 6 2.7054 -0.5561 -3.5199 8 6 2.9446 0.0968 -4.6766 9 6 3.4025 -0.7269 -5.6967 10 6 3.7280 -0.2282 -7.0445 11 7 4.1688 -1.0811 -7.9903 12 8 3.5999 0.9532 -7.3031 13 6 3.5256 -2.0408 -5.3401 14 16 3.0730 -2.2635 -3.7104 15 6 2.0324 -0.7105 1.2305 16 8 2.6530 -1.7468 1.1215 17 7 1.7919 -0.1942 2.4520 18 6 1.0427 1.0579 2.5837 19 6 2.2807 -0.8845 3.6482 20 6 3.6620 -0.3861 3.9866 21 1 4.1291 0.3696 3.3723 22 6 4.3298 -0.8948 5.0804 23 7 3.7609 -1.8147 5.8286 24 14 6.0417 -0.2766 5.5002 25 1 5.9907 1.1848 5.7588 26 1 6.5372 -0.9763 6.7127 27 1 6.9581 -0.5464 4.3632 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.7942 1.1594 -4.7975 32 1 4.2714 -2.0234 -7.7840 33 1 4.3828 -0.7530 -8.8778 34 1 3.8662 -2.8273 -5.9972 35 1 -0.0215 0.8374 2.6677 36 1 1.3755 1.5884 3.4758 37 1 1.2166 1.6794 1.7052 38 1 1.6082 -0.6857 4.4827 39 1 2.3177 -1.9573 3.4589 40 1 4.2305 -2.1723 6.5983 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920602392.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:00 Heat of formation + Delta-G solvation = -115.677930 kcal Electronic energy + Delta-G solvation = -26374.927741 eV Core-core repulsion = 22282.202898 eV Total energy + Delta-G solvation = -4092.724843 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.75263 -40.16007 -38.98829 -37.40402 -36.28576 -34.95833 -34.18929 -32.93257 -31.75833 -30.36465 -27.73988 -26.29910 -26.06785 -24.90150 -23.85120 -22.26191 -20.87237 -19.55641 -19.31377 -18.83550 -17.66362 -17.38698 -16.91750 -16.56526 -16.33199 -16.14689 -15.55007 -15.28351 -15.20151 -14.63826 -14.56296 -14.18540 -13.71024 -13.59491 -13.33527 -13.16406 -13.05655 -12.83922 -12.41792 -12.21333 -12.12203 -11.73373 -11.57145 -11.46803 -11.22062 -10.95921 -10.83842 -10.76315 -10.58950 -10.43613 -10.19379 -10.16206 -9.69513 -9.48724 -9.04893 -8.95991 -8.46707 -7.76788 -6.08114 -4.13151 -0.10865 0.96311 1.20493 1.39550 2.27267 2.52557 2.99828 3.10906 3.21353 3.30884 3.34932 3.39125 3.82147 4.30290 4.41746 4.55074 4.58853 4.71215 4.79684 4.94494 5.04207 5.23702 5.26547 5.40212 5.56567 5.62370 5.64999 5.71617 5.82775 5.96343 6.19612 6.26224 6.31876 6.84784 6.94474 7.35226 7.42203 7.55365 7.81638 7.87636 8.17377 8.24792 8.80529 8.95543 9.51939 10.99983 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016425 B = 0.002465 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.295045 B =11354.948832 C =12016.490148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.072 3.928 3 H 0.109 0.891 4 O -0.323 6.323 5 C 0.538 3.462 6 O -0.494 6.494 7 C -0.263 4.263 8 C -0.003 4.003 9 C -0.172 4.172 10 C 0.585 3.415 11 N -0.850 5.850 12 O -0.535 6.535 13 C -0.214 4.214 14 S 0.327 5.673 15 C 0.509 3.491 16 O -0.519 6.519 17 N -0.595 5.595 18 C 0.075 3.925 19 C 0.247 3.753 20 C -0.530 4.530 21 H 0.057 0.943 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.276 1.276 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.166 0.834 32 H 0.400 0.600 33 H 0.407 0.593 34 H 0.179 0.821 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.036 0.964 39 H 0.046 0.954 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.917 -1.245 -23.655 24.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 H 0.126 0.874 4 O -0.238 6.238 5 C 0.381 3.619 6 O -0.383 6.383 7 C -0.381 4.381 8 C -0.035 4.035 9 C -0.190 4.190 10 C 0.369 3.631 11 N -0.414 5.414 12 O -0.413 6.413 13 C -0.354 4.354 14 S 0.598 5.402 15 C 0.293 3.707 16 O -0.395 6.395 17 N -0.328 5.328 18 C -0.069 4.069 19 C 0.129 3.871 20 C -0.569 4.569 21 H 0.075 0.925 22 C -0.140 4.140 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.201 1.201 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.184 0.816 32 H 0.229 0.771 33 H 0.238 0.762 34 H 0.196 0.804 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.844 -2.070 -22.452 23.062 hybrid contribution 1.215 1.351 -0.936 2.043 sum -3.630 -0.719 -23.388 23.679 Atomic orbital electron populations 1.22297 0.92136 1.04157 1.04226 1.22708 0.95874 0.97732 0.82328 0.87382 1.86663 1.76925 1.40805 1.19415 1.19611 0.74533 0.84865 0.82880 1.90887 1.48319 1.15135 1.84004 1.23146 1.18228 0.99801 0.96942 1.20310 0.92413 1.02116 0.88637 1.18920 1.11025 0.92769 0.96246 1.17573 0.76114 0.85547 0.83874 1.43650 1.70393 1.12113 1.15253 1.90867 1.52900 1.16159 1.81328 1.26436 1.04764 1.00359 1.03841 1.83787 1.53647 1.02724 1.00093 1.19716 0.81222 0.85955 0.83786 1.90703 1.39642 1.23393 1.85739 1.48071 1.53966 1.23928 1.06854 1.21863 0.95388 0.86698 1.02921 1.19354 0.94307 0.93786 0.79679 1.21383 1.01027 1.23077 1.11374 0.92470 1.24928 0.98219 0.94862 0.96001 1.69916 1.38177 1.27972 1.17219 0.86544 0.84205 0.78821 0.77786 1.20205 1.21123 1.20135 0.91157 0.89099 0.90849 0.81619 0.77107 0.76195 0.80379 0.93042 0.90216 0.92301 0.94561 0.93618 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 9.28 37.16 0.34 -1.83 16 2 C 0.07 1.18 2.17 -27.88 -0.06 1.12 16 3 H 0.11 1.72 6.15 -51.93 -0.32 1.40 16 4 O -0.32 -5.38 9.26 -47.65 -0.44 -5.82 16 5 C 0.54 8.21 7.90 34.08 0.27 8.48 16 6 O -0.49 -8.27 16.05 -19.35 -0.31 -8.58 16 7 C -0.26 -3.24 6.37 -37.39 -0.24 -3.48 16 8 C 0.00 -0.04 9.47 -40.51 -0.38 -0.42 16 9 C -0.17 -1.59 5.82 -106.51 -0.62 -2.21 16 10 C 0.59 5.59 8.06 -12.56 -0.10 5.49 16 11 N -0.85 -4.06 8.84 30.41 0.27 -3.79 16 12 O -0.54 -7.43 17.52 5.26 0.09 -7.34 16 13 C -0.21 -1.38 10.41 30.18 0.31 -1.07 16 14 S 0.33 2.96 22.87 -107.50 -2.46 0.50 16 15 C 0.51 10.71 7.10 -10.98 -0.08 10.64 16 16 O -0.52 -13.17 16.09 -14.05 -0.23 -13.39 16 17 N -0.59 -12.40 2.86 -182.95 -0.52 -12.92 16 18 C 0.08 1.15 8.92 59.85 0.53 1.68 16 19 C 0.25 6.35 5.16 -5.20 -0.03 6.32 16 20 C -0.53 -14.89 9.39 -34.44 -0.32 -15.22 16 21 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 22 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 24 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.01 5.12 -51.93 -0.27 0.75 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.17 2.04 7.95 -52.49 -0.42 1.63 16 32 H 0.40 0.65 7.29 -40.82 -0.30 0.36 16 33 H 0.41 1.47 8.93 -40.82 -0.36 1.10 16 34 H 0.18 0.39 6.99 -52.49 -0.37 0.02 16 35 H 0.05 0.65 7.02 -51.93 -0.36 0.28 16 36 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 37 H 0.06 0.76 6.08 -51.93 -0.32 0.45 16 38 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 39 H 0.05 1.32 7.42 -51.92 -0.39 0.93 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 364.63 15.07 5.49 5.49 Total: -1.00 -37.72 364.63 -7.18 -44.89 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -4.32 Total: -1.47 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: -0.47 Total: 11.17 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.48 Total: -42.21 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -0.89 Total: -35.13 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -2.46 Total: 0.50 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.72 -7.18 -44.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920602392.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.784 kcal (2) G-P(sol) polarization free energy of solvation -37.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds