Wall clock time and date at job start Sat Apr 11 2020 05:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 109.47040 * 2 1 4 4 O 1.21274 * 120.00019 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99678 * 180.02562 * 3 2 1 6 6 C 1.47609 * 122.43106 * 0.02562 * 5 3 2 7 7 S 1.84075 * 102.63719 * 204.79046 * 6 5 3 8 8 C 1.83827 * 93.90265 * 326.59361 * 7 6 5 9 9 C 1.45495 * 122.42919 * 180.02562 * 5 3 2 10 10 H 1.09003 * 108.75145 * 299.74421 * 9 5 3 11 11 C 1.50693 * 108.75800 * 57.96676 * 9 5 3 12 12 O 1.21281 * 120.00095 * 2.44929 * 11 9 5 13 13 N 1.34780 * 120.00182 * 182.44590 * 11 9 5 14 14 C 1.46500 * 119.99910 * 180.02562 * 13 11 9 15 15 H 1.09002 * 109.47129 * 324.99754 * 14 13 11 16 16 C 1.50699 * 109.46939 * 205.00060 * 14 13 11 17 17 H 1.08003 * 120.00271 * 359.97438 * 16 14 13 18 18 C 1.37877 * 120.00384 * 179.97438 * 16 14 13 19 19 N 1.31515 * 119.99644 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00636 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46664 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47482 * 119.99851 * 20 18 16 23 23 H 1.48497 * 109.47236 * 240.00229 * 20 18 16 24 24 C 1.52997 * 109.47473 * 85.00011 * 14 13 11 25 25 F 1.39905 * 109.47157 * 59.99740 * 24 14 13 26 26 F 1.39900 * 109.47010 * 300.00131 * 24 14 13 27 27 F 1.39897 * 109.47422 * 179.97438 * 24 14 13 28 28 H 1.08996 * 109.46923 * 299.99920 * 1 2 3 29 29 H 1.08995 * 109.47109 * 59.99938 * 1 2 3 30 30 H 1.09001 * 109.47099 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46677 * 240.00260 * 2 1 3 32 32 H 1.08995 * 109.47109 * 120.00062 * 2 1 3 33 33 H 1.09000 * 110.77438 * 323.08208 * 6 5 3 34 34 H 1.09003 * 110.77182 * 86.31799 * 6 5 3 35 35 H 1.09000 * 110.99992 * 274.15305 * 8 7 6 36 36 H 1.08993 * 110.95232 * 150.28966 * 8 7 6 37 37 H 0.96994 * 120.00115 * 0.02562 * 13 11 9 38 38 H 0.97006 * 120.00331 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 4.3634 0.5868 -0.0017 7 16 5.8316 1.4028 0.7512 8 6 5.4453 3.0478 0.0273 9 6 3.9002 3.0170 0.0000 10 1 3.5553 3.5336 -0.8957 11 6 3.3794 3.7482 1.2103 12 8 2.6685 3.1730 2.0070 13 7 3.7036 5.0415 1.4076 14 6 3.1976 5.7521 2.5845 15 1 2.1941 5.3974 2.8197 16 6 3.1532 7.2309 2.2978 17 1 3.4706 7.6042 1.3352 18 6 2.7075 8.1076 3.2641 19 7 2.3206 7.6531 4.4360 20 14 2.6518 9.9405 2.9085 21 1 3.1362 10.1916 1.5273 22 1 1.2554 10.4282 3.0402 23 1 3.5203 10.6590 3.8753 24 6 4.1228 5.4910 3.7748 25 9 5.4108 5.9464 3.4730 26 9 4.1640 4.1182 4.0410 27 9 3.6400 6.1701 4.8986 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 4.0308 -0.2518 0.6102 34 1 4.5784 0.2598 -1.0190 35 1 5.8532 3.1370 -0.9796 36 1 5.8096 3.8508 0.6680 37 1 4.2718 5.5017 0.7703 38 1 2.0074 8.2698 5.1162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928808205.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:02 Heat of formation + Delta-G solvation = -191.098284 kcal Electronic energy + Delta-G solvation = -29532.743901 eV Core-core repulsion = 24894.891846 eV Total energy + Delta-G solvation = -4637.852055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.086 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.33781 -45.99148 -45.60194 -40.47064 -38.52486 -36.11395 -34.62271 -33.09157 -32.63308 -31.20974 -28.27726 -27.43621 -25.24277 -24.58050 -23.39023 -21.50250 -20.09630 -19.27529 -17.87743 -17.66541 -16.96097 -16.84999 -16.72164 -16.57897 -15.85674 -15.44881 -15.12889 -14.84523 -14.75103 -14.15091 -14.06460 -13.65221 -13.30966 -13.17158 -12.91463 -12.77243 -12.55875 -12.46353 -12.38878 -12.31077 -12.26957 -12.14240 -11.96066 -11.80062 -11.74917 -11.21855 -11.17216 -10.86803 -10.79474 -10.60862 -10.40550 -9.72165 -9.64290 -9.60994 -8.72866 -8.67074 -8.26675 -7.99121 -6.23062 -4.46988 1.40880 1.80447 2.51348 2.78161 3.10822 3.18729 3.25455 3.28825 3.70209 4.12817 4.21743 4.50149 4.55275 4.70795 4.80881 4.88907 4.94129 4.95357 5.02767 5.18982 5.20764 5.33968 5.42524 5.69395 5.84987 5.88342 5.88404 6.03334 6.21736 6.23004 6.95069 7.13838 7.15043 7.47107 7.63685 8.17539 8.28865 8.50486 8.86156 9.20703 10.68739 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.015249 B = 0.004279 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.753551 B = 6541.493074 C = 7243.402457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 C 0.531 3.469 4 O -0.506 6.506 5 N -0.605 5.605 6 C 0.153 3.847 7 S -0.252 6.252 8 C -0.070 4.070 9 C 0.114 3.886 10 H 0.111 0.889 11 C 0.504 3.496 12 O -0.505 6.505 13 N -0.712 5.712 14 C 0.248 3.752 15 H 0.085 0.915 16 C -0.551 4.551 17 H 0.078 0.922 18 C 0.064 3.936 19 N -0.839 5.839 20 Si 0.915 3.085 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.417 3.583 25 F -0.210 7.210 26 F -0.216 7.216 27 F -0.137 7.137 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.396 0.604 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.701 -13.127 -11.514 18.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.177 4.177 3 C 0.318 3.682 4 O -0.378 6.378 5 N -0.342 5.342 6 C -0.081 4.081 7 S -0.026 6.026 8 C -0.219 4.219 9 C 0.005 3.995 10 H 0.128 0.872 11 C 0.286 3.714 12 O -0.379 6.379 13 N -0.362 5.362 14 C 0.143 3.857 15 H 0.102 0.898 16 C -0.588 4.588 17 H 0.096 0.904 18 C -0.144 4.144 19 N -0.473 5.473 20 Si 0.742 3.258 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.206 1.206 24 C 0.361 3.639 25 F -0.192 7.192 26 F -0.198 7.198 27 F -0.118 7.118 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.132 0.868 34 H 0.116 0.884 35 H 0.131 0.869 36 H 0.146 0.854 37 H 0.230 0.770 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.522 -13.417 -9.957 17.309 hybrid contribution -0.189 1.501 -0.762 1.694 sum 4.333 -11.916 -10.718 16.602 Atomic orbital electron populations 1.21536 0.92744 1.01465 1.03718 1.21616 0.98870 0.93222 1.03968 1.20545 0.80082 0.92216 0.75327 1.90762 1.53845 1.46410 1.46829 1.48228 1.06059 1.03872 1.76053 1.24260 0.87670 0.93001 1.03156 1.88438 1.35033 1.09476 1.69641 1.24555 0.93841 0.98043 1.05462 1.21169 0.93209 0.85151 0.99996 0.87186 1.20345 0.81507 0.82709 0.86835 1.90701 1.35622 1.66531 1.45021 1.45975 1.52575 1.10642 1.27051 1.19699 0.93187 0.94131 0.78710 0.89783 1.20901 1.47947 0.88152 1.01795 0.90419 1.25089 0.94435 1.00473 0.94434 1.70415 1.37816 1.35079 1.03945 0.86154 0.77970 0.83047 0.78632 1.19394 1.20552 1.20573 1.23133 0.80090 0.72077 0.88620 1.92981 1.43242 1.89319 1.93689 1.93082 1.96664 1.34794 1.95259 1.93403 1.86413 1.77946 1.54046 0.91547 0.92020 0.92116 0.89152 0.88814 0.86766 0.88380 0.86932 0.85388 0.77048 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.20 37.16 0.34 -1.12 16 2 C -0.14 -1.39 5.21 -27.88 -0.15 -1.54 16 3 C 0.53 7.98 6.73 -10.99 -0.07 7.91 16 4 O -0.51 -10.02 14.52 -14.56 -0.21 -10.23 16 5 N -0.60 -8.13 2.79 -169.15 -0.47 -8.60 16 6 C 0.15 1.48 7.21 60.45 0.44 1.91 16 7 S -0.25 -3.10 23.42 -107.50 -2.52 -5.62 16 8 C -0.07 -0.79 6.94 37.98 0.26 -0.53 16 9 C 0.11 1.64 2.91 -68.80 -0.20 1.44 16 10 H 0.11 1.42 8.14 -51.93 -0.42 0.99 16 11 C 0.50 10.06 5.97 -10.99 -0.07 9.99 16 12 O -0.51 -12.25 13.10 -14.57 -0.19 -12.45 16 13 N -0.71 -14.52 4.59 -54.93 -0.25 -14.77 16 14 C 0.25 6.26 2.21 -69.08 -0.15 6.10 16 15 H 0.08 2.44 7.58 -51.93 -0.39 2.04 16 16 C -0.55 -14.16 8.46 -34.44 -0.29 -14.45 16 17 H 0.08 1.88 7.74 -52.48 -0.41 1.47 16 18 C 0.06 1.70 5.20 -17.82 -0.09 1.60 16 19 N -0.84 -23.38 9.51 55.43 0.53 -22.85 16 20 Si 0.92 20.28 29.54 -169.99 -5.02 15.26 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 C 0.42 10.80 2.81 37.16 0.10 10.91 16 25 F -0.21 -5.16 16.94 2.25 0.04 -5.12 16 26 F -0.22 -5.60 15.68 2.25 0.04 -5.57 16 27 F -0.14 -3.86 12.91 2.25 0.03 -3.83 16 28 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 29 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.86 7.63 -51.93 -0.40 0.46 16 33 H 0.11 0.94 7.13 -51.93 -0.37 0.57 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.13 1.58 7.18 -51.93 -0.37 1.20 16 37 H 0.40 6.74 8.13 -40.82 -0.33 6.41 16 38 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 337.77 15.07 5.09 5.09 Total: -1.00 -34.78 337.77 -7.18 -41.96 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.36 Total: 4.50 kcal Atomic # 6 Polarization: 22.10 SS G_CDS: 0.12 Total: 22.23 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: -0.20 Total: -46.23 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.40 Total: -22.68 kcal Atomic # 9 Polarization: -14.62 SS G_CDS: 0.10 Total: -14.52 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -2.52 Total: -5.62 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.78 -7.18 -41.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928808205.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.139 kcal (2) G-P(sol) polarization free energy of solvation -34.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds