Wall clock time and date at job start Sat Apr 11 2020 05:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.81400 * 109.47073 * 2 1 4 4 O 1.42097 * 110.54134 * 68.37661 * 3 2 1 5 5 O 1.42104 * 110.54163 * 291.62340 * 3 2 1 6 6 C 1.76206 * 104.45083 * 180.02562 * 3 2 1 7 7 C 1.38292 * 119.91960 * 269.72914 * 6 3 2 8 8 C 1.38102 * 120.07441 * 179.72116 * 7 6 3 9 9 C 1.38932 * 119.91849 * 0.56866 * 8 7 6 10 10 N 1.39729 * 120.07224 * 179.67779 * 9 8 7 11 11 C 1.34769 * 119.99799 * 33.35291 * 10 9 8 12 12 O 1.21378 * 120.00599 * 5.27555 * 11 10 9 13 13 C 1.49359 * 120.00109 * 185.27331 * 11 10 9 14 14 O 1.21363 * 119.99305 * 359.97438 * 13 11 10 15 15 N 1.34769 * 120.00109 * 179.97438 * 13 11 10 16 16 C 1.46503 * 119.99628 * 179.97438 * 15 13 11 17 17 C 1.50707 * 109.46690 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00532 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99714 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99907 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99953 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46946 * 90.00344 * 21 19 17 23 23 H 1.48502 * 109.47441 * 210.00240 * 21 19 17 24 24 H 1.48501 * 109.47182 * 330.00678 * 21 19 17 25 25 C 1.38927 * 119.84946 * 359.70288 * 9 8 7 26 26 C 1.38098 * 119.92658 * 0.02562 * 25 9 8 27 27 H 1.09000 * 109.47415 * 60.00094 * 1 2 3 28 28 H 1.09008 * 109.47177 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47400 * 299.99768 * 1 2 3 30 30 H 1.09001 * 109.47400 * 240.00232 * 2 1 3 31 31 H 1.09000 * 109.47415 * 119.99906 * 2 1 3 32 32 H 1.08003 * 119.96631 * 359.97438 * 7 6 3 33 33 H 1.07993 * 120.03889 * 180.24584 * 8 7 6 34 34 H 0.96995 * 119.99894 * 213.34763 * 10 9 8 35 35 H 0.97001 * 120.00229 * 359.97438 * 15 13 11 36 36 H 1.08994 * 109.47173 * 299.99512 * 16 15 13 37 37 H 1.08995 * 109.47204 * 60.00298 * 16 15 13 38 38 H 0.97001 * 119.99631 * 180.02562 * 20 19 17 39 39 H 1.08006 * 120.03460 * 179.97438 * 25 9 8 40 40 H 1.08000 * 119.96119 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3438 1.2370 5 8 1.8385 2.3438 -1.2370 6 6 3.8899 1.5561 -0.0008 7 6 4.5780 1.5012 1.1975 8 6 5.9532 1.3746 1.2007 9 6 6.6463 1.3142 -0.0019 10 7 8.0383 1.1929 -0.0024 11 6 8.6543 0.4950 0.9722 12 8 7.9968 -0.1077 1.7955 13 6 10.1460 0.4631 1.0394 14 8 10.8034 1.0653 0.2159 15 7 10.7619 -0.2343 2.0143 16 6 12.2251 -0.2660 2.0797 17 6 12.6573 -1.1077 3.2528 18 1 11.9163 -1.5728 3.8859 19 6 13.9990 -1.2848 3.5171 20 7 14.9014 -0.7188 2.7458 21 14 14.5347 -2.3274 4.9714 22 1 14.6881 -3.7396 4.5383 23 1 15.8325 -1.8248 5.4895 24 1 13.5094 -2.2468 6.0427 25 6 5.9523 1.3753 -1.2038 26 6 4.5766 1.4963 -1.1996 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.0391 1.5533 2.1320 33 1 6.4897 1.3278 2.1368 34 1 8.5613 1.6109 -0.7043 35 1 10.2364 -0.7153 2.6727 36 1 12.6208 -0.6948 1.1591 37 1 12.6054 0.7482 2.2011 38 1 15.8452 -0.8437 2.9315 39 1 6.4881 1.3291 -2.1404 40 1 4.0365 1.5434 -2.1336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116830954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:12 Heat of formation + Delta-G solvation = -112.550367 kcal Electronic energy + Delta-G solvation = -25822.180180 eV Core-core repulsion = 21729.590958 eV Total energy + Delta-G solvation = -4092.589221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 3.98 seconds Orbital eigenvalues (eV) -41.09428 -39.34143 -38.03514 -37.42338 -36.27163 -35.49380 -34.36053 -33.64956 -32.47581 -31.42732 -30.42839 -27.86948 -25.37728 -24.48251 -23.52555 -23.05806 -21.80957 -20.12001 -19.35086 -18.93390 -18.28394 -17.60247 -16.74550 -16.61345 -16.38719 -15.92011 -15.77504 -15.28367 -15.04156 -14.85458 -14.62021 -14.37666 -14.07769 -13.91302 -13.69591 -13.55033 -13.23601 -13.21100 -12.98862 -12.40664 -12.32099 -12.14703 -12.06791 -12.03866 -11.90098 -11.52908 -11.30360 -11.09454 -10.98331 -10.89345 -10.83312 -10.40265 -9.57247 -9.45325 -9.28656 -8.92284 -8.80085 -8.23219 -6.29249 -4.37161 -0.32008 0.37618 0.97267 1.57514 2.35758 2.54059 3.05430 3.18649 3.25291 3.28071 3.45429 3.57772 3.73507 3.82908 4.12321 4.23900 4.25520 4.45997 4.51620 4.68555 4.87409 4.90203 4.98363 5.07675 5.11639 5.16002 5.18601 5.41098 5.49052 5.56258 5.76730 5.84604 5.99419 6.50268 6.76624 6.95279 7.02754 7.26093 7.43223 7.60591 7.78095 8.23254 8.42385 8.72658 9.29476 10.80691 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.027304 B = 0.001890 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.229663 B =14810.007463 C =15451.179156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.609 4.609 3 S 2.500 3.500 4 O -0.937 6.937 5 O -0.939 6.939 6 C -0.684 4.684 7 C -0.002 4.002 8 C -0.145 4.145 9 C 0.210 3.790 10 N -0.655 5.655 11 C 0.511 3.489 12 O -0.497 6.497 13 C 0.491 3.509 14 O -0.533 6.533 15 N -0.667 5.667 16 C 0.246 3.754 17 C -0.549 4.549 18 H 0.067 0.933 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.908 3.092 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.271 1.271 25 C -0.166 4.166 26 C -0.003 4.003 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.428 0.572 35 H 0.405 0.595 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.268 0.732 39 H 0.140 0.860 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.427 1.786 -7.678 27.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.739 4.739 3 S 2.680 3.320 4 O -0.934 6.934 5 O -0.936 6.936 6 C -0.772 4.772 7 C -0.021 4.021 8 C -0.166 4.166 9 C 0.114 3.886 10 N -0.302 5.302 11 C 0.294 3.706 12 O -0.369 6.369 13 C 0.269 3.731 14 O -0.412 6.412 15 N -0.316 5.316 16 C 0.126 3.874 17 C -0.587 4.587 18 H 0.085 0.915 19 C -0.139 4.139 20 N -0.521 5.521 21 Si 0.735 3.265 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.196 1.196 25 C -0.188 4.188 26 C -0.022 4.022 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.267 0.733 35 H 0.240 0.760 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.157 0.843 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -26.522 2.538 -7.631 27.714 hybrid contribution 1.224 -1.316 0.661 1.914 sum -25.298 1.222 -6.970 26.269 Atomic orbital electron populations 1.21569 0.90309 1.05304 1.03710 1.30213 1.07044 1.24343 1.12301 1.05332 0.74342 0.77589 0.74722 1.93574 1.83429 1.71976 1.44467 1.93567 1.83496 1.72015 1.44531 1.30404 1.25545 1.21761 0.99471 1.20819 0.94016 0.90550 0.96745 1.21343 0.94540 1.02596 0.98111 1.18121 0.82711 0.93235 0.94551 1.43452 1.05065 1.52149 1.29498 1.21062 0.90481 0.78257 0.80812 1.90758 1.66973 1.40822 1.38356 1.19577 0.86515 0.82724 0.84269 1.90755 1.65837 1.44503 1.40091 1.46451 1.11295 1.46510 1.27387 1.19390 0.71316 0.98429 0.98253 1.21184 0.92543 1.32398 1.12556 0.91514 1.24947 0.96196 0.95715 0.97026 1.69962 1.01461 1.42706 1.37980 0.86345 0.78195 0.80131 0.81877 1.20347 1.20908 1.19607 1.21066 0.94508 1.06218 0.96963 1.20707 0.93816 0.90981 0.96711 0.90763 0.89714 0.90727 0.84591 0.84504 0.83646 0.83532 0.73310 0.76009 0.94589 0.94573 0.92250 0.84253 0.83631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.92 37.15 0.37 -0.26 16 2 C -0.61 -2.69 6.70 37.15 0.25 -2.44 16 3 S 2.50 19.91 5.16 -107.50 -0.55 19.35 16 4 O -0.94 -10.28 17.11 -57.54 -0.98 -11.27 16 5 O -0.94 -9.86 17.12 -57.54 -0.98 -10.85 16 6 C -0.68 -6.20 5.66 -39.54 -0.22 -6.43 16 7 C 0.00 -0.02 9.46 -39.61 -0.37 -0.39 16 8 C -0.14 -1.71 8.65 -39.37 -0.34 -2.05 16 9 C 0.21 2.42 6.28 -83.75 -0.53 1.89 16 10 N -0.66 -8.07 5.32 -10.29 -0.05 -8.13 16 11 C 0.51 7.87 7.62 -11.63 -0.09 7.78 16 12 O -0.50 -8.15 14.16 5.47 0.08 -8.07 16 13 C 0.49 9.18 7.89 -11.63 -0.09 9.08 16 14 O -0.53 -11.10 16.48 5.49 0.09 -11.01 16 15 N -0.67 -13.61 5.54 -61.94 -0.34 -13.95 16 16 C 0.25 6.13 5.43 -5.19 -0.03 6.11 16 17 C -0.55 -14.33 9.28 -34.43 -0.32 -14.65 16 18 H 0.07 1.65 7.60 -52.49 -0.40 1.25 16 19 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.88 -24.96 13.29 55.43 0.74 -24.23 16 21 Si 0.91 20.29 29.54 -169.99 -5.02 15.27 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 25 C -0.17 -1.53 9.96 -39.38 -0.39 -1.92 16 26 C 0.00 -0.02 9.46 -39.61 -0.37 -0.40 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.08 0.24 8.14 -51.92 -0.42 -0.18 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.14 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.14 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.15 1.20 7.56 -52.48 -0.40 0.81 16 33 H 0.15 1.85 6.42 -52.49 -0.34 1.51 16 34 H 0.43 4.56 8.30 -40.82 -0.34 4.22 16 35 H 0.40 7.59 7.79 -40.82 -0.32 7.27 16 36 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 40 H 0.15 0.92 7.56 -52.49 -0.40 0.52 16 LS Contribution 365.39 15.07 5.51 5.51 Total: -1.00 -34.65 365.39 -8.47 -43.13 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -4.70 Total: 6.28 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -2.24 Total: -2.03 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.34 Total: -46.30 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -1.80 Total: -41.20 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 19.91 SS G_CDS: -0.55 Total: 19.35 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.65 -8.47 -43.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116830954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.422 kcal (2) G-P(sol) polarization free energy of solvation -34.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.98 seconds