Wall clock time and date at job start Sat Apr 11 2020 05:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.81400 * 109.47073 * 2 1 4 4 O 1.42097 * 110.54134 * 68.37661 * 3 2 1 5 5 O 1.42104 * 110.54163 * 291.62340 * 3 2 1 6 6 C 1.76206 * 104.45083 * 180.02562 * 3 2 1 7 7 C 1.38292 * 119.91960 * 269.72914 * 6 3 2 8 8 C 1.38102 * 120.07441 * 179.72116 * 7 6 3 9 9 C 1.38932 * 119.91849 * 0.56866 * 8 7 6 10 10 N 1.39729 * 120.07224 * 179.67779 * 9 8 7 11 11 C 1.34769 * 119.99799 * 33.35291 * 10 9 8 12 12 O 1.21378 * 120.00599 * 5.27555 * 11 10 9 13 13 C 1.49359 * 120.00109 * 185.27331 * 11 10 9 14 14 O 1.21363 * 119.99305 * 359.97438 * 13 11 10 15 15 N 1.34769 * 120.00109 * 179.97438 * 13 11 10 16 16 C 1.46503 * 119.99628 * 179.97438 * 15 13 11 17 17 C 1.50707 * 109.46690 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00532 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99714 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99907 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99953 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46946 * 90.00344 * 21 19 17 23 23 H 1.48502 * 109.47441 * 210.00240 * 21 19 17 24 24 H 1.48501 * 109.47182 * 330.00678 * 21 19 17 25 25 C 1.38927 * 119.84946 * 359.70288 * 9 8 7 26 26 C 1.38098 * 119.92658 * 0.02562 * 25 9 8 27 27 H 1.09000 * 109.47415 * 60.00094 * 1 2 3 28 28 H 1.09008 * 109.47177 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47400 * 299.99768 * 1 2 3 30 30 H 1.09001 * 109.47400 * 240.00232 * 2 1 3 31 31 H 1.09000 * 109.47415 * 119.99906 * 2 1 3 32 32 H 1.08003 * 119.96631 * 359.97438 * 7 6 3 33 33 H 1.07993 * 120.03889 * 180.24584 * 8 7 6 34 34 H 0.96995 * 119.99894 * 213.34763 * 10 9 8 35 35 H 0.97001 * 120.00229 * 359.97438 * 15 13 11 36 36 H 1.08994 * 109.47173 * 299.99512 * 16 15 13 37 37 H 1.08995 * 109.47204 * 60.00298 * 16 15 13 38 38 H 0.97001 * 119.99631 * 180.02562 * 20 19 17 39 39 H 1.08006 * 120.03460 * 179.97438 * 25 9 8 40 40 H 1.08000 * 119.96119 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3438 1.2370 5 8 1.8385 2.3438 -1.2370 6 6 3.8899 1.5561 -0.0008 7 6 4.5780 1.5012 1.1975 8 6 5.9532 1.3746 1.2007 9 6 6.6463 1.3142 -0.0019 10 7 8.0383 1.1929 -0.0024 11 6 8.6543 0.4950 0.9722 12 8 7.9968 -0.1077 1.7955 13 6 10.1460 0.4631 1.0394 14 8 10.8034 1.0653 0.2159 15 7 10.7619 -0.2343 2.0143 16 6 12.2251 -0.2660 2.0797 17 6 12.6573 -1.1077 3.2528 18 1 11.9163 -1.5728 3.8859 19 6 13.9990 -1.2848 3.5171 20 7 14.9014 -0.7188 2.7458 21 14 14.5347 -2.3274 4.9714 22 1 14.6881 -3.7396 4.5383 23 1 15.8325 -1.8248 5.4895 24 1 13.5094 -2.2468 6.0427 25 6 5.9523 1.3753 -1.2038 26 6 4.5766 1.4963 -1.1996 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.0391 1.5533 2.1320 33 1 6.4897 1.3278 2.1368 34 1 8.5613 1.6109 -0.7043 35 1 10.2364 -0.7153 2.6727 36 1 12.6208 -0.6948 1.1591 37 1 12.6054 0.7482 2.2011 38 1 15.8452 -0.8437 2.9315 39 1 6.4881 1.3291 -2.1404 40 1 4.0365 1.5434 -2.1336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116830954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:11 Heat of formation + Delta-G solvation = -140.133264 kcal Electronic energy + Delta-G solvation = -25823.376264 eV Core-core repulsion = 21729.590958 eV Total energy + Delta-G solvation = -4093.785306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.27030 -40.52466 -39.31882 -38.14387 -37.00758 -36.77408 -35.93933 -34.40434 -33.99147 -32.18864 -31.33826 -29.74453 -26.73024 -25.08175 -24.60080 -24.14110 -23.10691 -21.52135 -20.30501 -20.01173 -19.10672 -18.56174 -18.34962 -17.48149 -17.31618 -17.17016 -17.01338 -16.84514 -16.14596 -15.90549 -15.70309 -15.31945 -15.09776 -14.97634 -14.55397 -14.42046 -14.27349 -14.10258 -14.00868 -13.86873 -13.35504 -13.15540 -13.11599 -13.03951 -12.91507 -12.74552 -12.55949 -12.34629 -12.24691 -12.04138 -11.81926 -11.55200 -11.37212 -10.86672 -10.82247 -10.15594 -10.10887 -9.69719 -8.33283 -6.49399 -0.91679 -0.50027 0.20806 0.29663 1.11331 1.43981 1.44707 1.56512 1.89154 1.95689 2.33634 2.37279 2.57400 2.96766 3.02358 3.15890 3.33420 3.67437 3.76676 3.79659 3.93898 4.17616 4.26665 4.31904 4.43997 4.69613 4.77887 4.84488 4.90531 4.94110 4.99148 5.03735 5.09889 5.14633 5.17605 5.20661 5.47288 5.69090 5.74919 5.80984 6.34527 6.53284 6.63065 6.93507 7.23497 8.78161 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.027304 B = 0.001890 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.229663 B =14810.007463 C =15451.179156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.585 4.585 3 S 2.503 3.497 4 O -0.974 6.974 5 O -0.968 6.968 6 C -0.679 4.679 7 C -0.010 4.010 8 C -0.162 4.162 9 C 0.184 3.816 10 N -0.638 5.638 11 C 0.524 3.476 12 O -0.507 6.507 13 C 0.494 3.506 14 O -0.555 6.555 15 N -0.670 5.670 16 C 0.262 3.738 17 C -0.562 4.562 18 H 0.080 0.920 19 C 0.010 3.990 20 N -0.924 5.924 21 Si 0.982 3.018 22 H -0.270 1.270 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.157 4.157 26 C -0.005 4.005 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.163 0.837 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.132 0.868 34 H 0.435 0.565 35 H 0.414 0.586 36 H 0.007 0.993 37 H 0.006 0.994 38 H 0.271 0.729 39 H 0.166 0.834 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.622 0.311 -7.899 29.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.718 4.718 3 S 2.687 3.313 4 O -0.972 6.972 5 O -0.965 6.965 6 C -0.766 4.766 7 C -0.029 4.029 8 C -0.183 4.183 9 C 0.089 3.911 10 N -0.286 5.286 11 C 0.306 3.694 12 O -0.381 6.381 13 C 0.274 3.726 14 O -0.435 6.435 15 N -0.320 5.320 16 C 0.141 3.859 17 C -0.600 4.600 18 H 0.098 0.902 19 C -0.190 4.190 20 N -0.562 5.562 21 Si 0.805 3.195 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.184 1.184 25 C -0.178 4.178 26 C -0.024 4.024 27 H 0.096 0.904 28 H 0.124 0.876 29 H 0.092 0.908 30 H 0.181 0.819 31 H 0.174 0.826 32 H 0.175 0.825 33 H 0.150 0.850 34 H 0.276 0.724 35 H 0.251 0.749 36 H 0.025 0.975 37 H 0.024 0.976 38 H 0.080 0.920 39 H 0.184 0.816 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -28.749 1.120 -7.875 29.829 hybrid contribution 1.728 -0.824 0.625 2.014 sum -27.021 0.295 -7.250 27.979 Atomic orbital electron populations 1.21775 0.89869 1.06694 1.04044 1.30040 1.07231 1.19815 1.14686 1.05230 0.73523 0.79283 0.73313 1.93527 1.83572 1.74410 1.45643 1.93527 1.83496 1.74240 1.45229 1.30649 1.26375 1.20267 0.99327 1.20974 0.93451 0.90630 0.97883 1.21356 0.95375 1.03688 0.97841 1.18299 0.81847 0.95395 0.95516 1.43226 1.05786 1.51086 1.28453 1.20156 0.88405 0.79123 0.81741 1.90764 1.66460 1.41761 1.39106 1.20100 0.88277 0.81262 0.82990 1.90736 1.67091 1.45019 1.40674 1.46160 1.09646 1.47652 1.28584 1.18860 0.73870 0.96324 0.96879 1.21562 0.93213 1.32384 1.12849 0.90156 1.25961 0.96263 0.96885 0.99939 1.70096 1.01912 1.44251 1.39968 0.85189 0.77781 0.78253 0.78228 1.19555 1.20748 1.18366 1.21368 0.94854 1.04529 0.97058 1.21106 0.93718 0.89991 0.97622 0.90399 0.87645 0.90779 0.81949 0.82572 0.82532 0.85003 0.72412 0.74939 0.97489 0.97603 0.92040 0.81624 0.81000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 9.92 71.98 0.71 -0.16 16 2 C -0.58 -3.14 6.70 71.98 0.48 -2.66 16 3 S 2.50 35.64 5.16 -56.49 -0.29 35.35 16 4 O -0.97 -20.76 17.11 -127.65 -2.18 -22.94 16 5 O -0.97 -18.85 17.12 -127.65 -2.18 -21.03 16 6 C -0.68 -11.10 5.66 22.29 0.13 -10.98 16 7 C -0.01 -0.19 9.46 22.25 0.21 0.02 16 8 C -0.16 -3.75 8.65 22.40 0.19 -3.56 16 9 C 0.18 4.04 6.28 38.21 0.24 4.28 16 10 N -0.64 -15.32 5.32 -304.84 -1.62 -16.95 16 11 C 0.52 16.09 7.62 87.24 0.67 16.76 16 12 O -0.51 -16.55 14.16 -3.33 -0.05 -16.60 16 13 C 0.49 18.83 7.89 87.24 0.69 19.52 16 14 O -0.56 -23.74 16.48 -3.29 -0.05 -23.79 16 15 N -0.67 -28.02 5.54 -468.23 -2.59 -30.61 16 16 C 0.26 13.61 5.43 85.63 0.46 14.07 16 17 C -0.56 -29.73 9.28 25.60 0.24 -29.49 16 18 H 0.08 3.93 7.60 -2.91 -0.02 3.91 16 19 C 0.01 0.54 5.46 84.66 0.46 1.00 16 20 N -0.92 -53.33 13.29 21.45 0.28 -53.04 16 21 Si 0.98 41.39 29.54 68.60 2.03 43.42 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 24 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 25 C -0.16 -2.53 9.96 22.40 0.22 -2.31 16 26 C -0.01 -0.08 9.46 22.25 0.21 0.13 16 27 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.10 0.20 8.14 -2.38 -0.02 0.18 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.16 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.16 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.16 2.52 7.56 -2.91 -0.02 2.49 16 33 H 0.13 3.40 6.42 -2.91 -0.02 3.38 16 34 H 0.44 8.95 8.30 -92.71 -0.77 8.18 16 35 H 0.41 15.68 7.79 -92.71 -0.72 14.96 16 36 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.27 14.60 8.31 -92.71 -0.77 13.82 16 39 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 40 H 0.17 1.58 7.56 -2.91 -0.02 1.56 16 Total: -1.00 -76.36 365.39 -2.14 -78.50 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -0.39 Total: 21.08 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 4.92 Total: 6.63 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -3.93 Total: -100.60 kcal Atomic # 8 Polarization: -79.90 SS G_CDS: -4.47 Total: -84.37 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 35.64 SS G_CDS: -0.29 Total: 35.35 kcal Total: -76.36 -2.14 -78.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116830954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.635 kcal (2) G-P(sol) polarization free energy of solvation -76.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds