Wall clock time and date at job start Sat Apr 11 2020 05:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81397 * 102.99979 * 2 1 4 4 C 1.53001 * 109.47074 * 179.97438 * 3 2 1 5 5 O 1.42894 * 109.47400 * 180.02562 * 4 3 2 6 6 N 1.41602 * 114.00322 * 179.97438 * 5 4 3 7 7 C 1.34771 * 120.00049 * 179.97438 * 6 5 4 8 8 O 1.21371 * 120.00160 * 0.02562 * 7 6 5 9 9 C 1.49320 * 120.00097 * 179.97438 * 7 6 5 10 10 O 1.21390 * 119.99760 * 0.02562 * 9 7 6 11 11 N 1.34779 * 120.00328 * 180.02562 * 9 7 6 12 12 C 1.39734 * 120.00032 * 175.49969 * 11 9 7 13 13 C 1.38995 * 120.01030 * 35.14097 * 12 11 9 14 14 C 1.37968 * 119.99468 * 180.02562 * 13 12 11 15 15 C 1.38932 * 120.00613 * 0.02562 * 14 13 12 16 16 O 1.35767 * 119.99049 * 179.97438 * 15 14 13 17 17 C 1.34799 * 117.00198 * 5.34012 * 16 15 14 18 18 H 1.07999 * 119.99771 * 354.96831 * 17 16 15 19 19 C 1.38649 * 119.99946 * 174.96419 * 17 16 15 20 20 N 1.31558 * 120.00072 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99889 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47182 * 90.00051 * 21 19 17 23 23 H 1.48498 * 109.47194 * 210.00189 * 21 19 17 24 24 H 1.48505 * 109.46896 * 330.00061 * 21 19 17 25 25 C 1.38935 * 120.01769 * 0.24677 * 15 14 13 26 26 C 1.37967 * 120.00229 * 359.49421 * 25 15 14 27 27 H 1.08997 * 109.47101 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47383 * 300.00146 * 1 2 3 29 29 H 1.09007 * 109.46703 * 59.99889 * 1 2 3 30 30 H 1.09004 * 109.47358 * 60.00044 * 3 2 1 31 31 H 1.08998 * 109.47063 * 299.99400 * 3 2 1 32 32 H 1.09004 * 109.46804 * 59.99935 * 4 3 2 33 33 H 1.09004 * 109.47073 * 300.00179 * 4 3 2 34 34 H 0.97003 * 119.99610 * 0.02562 * 6 5 4 35 35 H 0.97001 * 119.99376 * 355.49650 * 11 9 7 36 36 H 1.08005 * 120.00070 * 0.02562 * 13 12 11 37 37 H 1.07998 * 119.99666 * 179.97438 * 14 13 12 38 38 H 0.96995 * 120.00149 * 179.97438 * 20 19 17 39 39 H 1.07995 * 120.00120 * 179.72497 * 25 15 14 40 40 H 1.07999 * 120.00513 * 180.22771 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 8 4.0639 3.3322 0.0012 6 7 5.4539 3.6024 0.0025 7 6 5.8926 4.8767 0.0026 8 8 5.0964 5.7927 0.0022 9 6 7.3584 5.1616 0.0045 10 8 8.1548 4.2455 0.0054 11 7 7.7973 6.4360 0.0051 12 6 9.1653 6.7037 0.1018 13 6 10.0844 5.8537 -0.5019 14 6 11.4351 6.1181 -0.4058 15 6 11.8766 7.2336 0.2948 16 8 13.2058 7.4932 0.3896 17 6 14.0368 6.6944 -0.3093 18 1 13.6438 5.8425 -0.8442 19 6 15.3959 6.9666 -0.3416 20 7 15.8746 8.0042 0.3104 21 14 16.5474 5.8601 -1.3108 22 1 16.6655 6.3659 -2.7019 23 1 17.8869 5.8569 -0.6698 24 1 16.0049 4.4778 -1.3310 25 6 10.9585 8.0805 0.9032 26 6 9.6074 7.8196 0.8029 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 1.8032 2.2371 0.8900 31 1 1.8032 2.2370 -0.8900 32 1 4.1616 1.4702 -0.8891 33 1 4.1609 1.4703 0.8909 34 1 6.0902 2.8703 0.0024 35 1 7.1634 7.1672 -0.0616 36 1 9.7413 4.9862 -1.0462 37 1 12.1493 5.4574 -0.8746 38 1 16.8255 8.1944 0.2881 39 1 11.3021 8.9451 1.4515 40 1 8.8935 8.4798 1.2728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116882181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:21 Heat of formation + Delta-G solvation = -48.799097 kcal Electronic energy + Delta-G solvation = -25135.676261 eV Core-core repulsion = 21045.851502 eV Total energy + Delta-G solvation = -4089.824759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.90451 -39.38859 -38.59632 -37.78708 -36.68767 -34.31663 -33.35518 -32.25715 -31.01811 -30.30644 -29.52614 -28.38815 -25.61248 -24.65939 -23.83665 -22.43516 -21.51019 -20.30850 -19.25876 -18.52892 -17.95982 -17.16645 -16.88985 -16.81208 -16.55618 -16.23253 -15.83037 -15.09552 -14.70148 -14.54902 -14.39722 -14.34959 -14.26580 -13.85997 -13.70157 -13.65059 -13.25081 -12.99291 -12.88412 -12.69568 -12.62906 -11.96129 -11.83495 -11.65108 -11.50264 -11.44898 -11.07394 -10.81513 -10.69949 -10.47522 -9.87095 -9.79554 -9.46065 -9.28615 -8.78508 -8.33917 -8.30512 -7.06964 -6.50958 -4.08258 0.61356 1.12734 1.35522 1.87966 2.09954 2.20778 3.03506 3.08896 3.12091 3.15311 3.16992 3.92742 3.98965 4.15018 4.17899 4.23687 4.48877 4.52911 4.54670 4.64360 4.92602 5.03457 5.05228 5.10570 5.18496 5.58706 5.63393 5.94908 6.05766 6.14221 6.17761 6.45539 6.61474 6.75534 6.88035 6.94660 7.20446 7.34135 7.35795 7.60360 7.66212 7.93396 7.96231 8.94493 9.62243 10.66508 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.023340 B = 0.001620 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.390801 B =17282.147344 C =18330.811627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.238 6.238 3 C -0.087 4.087 4 C 0.046 3.954 5 O -0.136 6.136 6 N -0.569 5.569 7 C 0.524 3.476 8 O -0.502 6.502 9 C 0.511 3.489 10 O -0.506 6.506 11 N -0.616 5.616 12 C 0.018 3.982 13 C -0.058 4.058 14 C -0.222 4.222 15 C 0.151 3.849 16 O -0.172 6.172 17 C -0.392 4.392 18 H 0.094 0.906 19 C 0.041 3.959 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.266 1.266 25 C -0.177 4.177 26 C -0.082 4.082 27 H 0.106 0.894 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.423 0.577 35 H 0.416 0.584 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.271 0.729 39 H 0.124 0.876 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.226 -12.205 -1.254 28.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.014 6.014 3 C -0.236 4.236 4 C -0.032 4.032 5 O -0.140 6.140 6 N -0.273 5.273 7 C 0.305 3.695 8 O -0.375 6.375 9 C 0.292 3.708 10 O -0.382 6.382 11 N -0.262 5.262 12 C -0.074 4.074 13 C -0.078 4.078 14 C -0.242 4.242 15 C 0.096 3.904 16 O -0.075 6.075 17 C -0.468 4.468 18 H 0.111 0.889 19 C -0.164 4.164 20 N -0.493 5.493 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.197 4.197 26 C -0.102 4.102 27 H 0.125 0.875 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.266 0.734 35 H 0.253 0.747 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.081 0.919 39 H 0.142 0.858 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -25.361 -12.627 -1.068 28.351 hybrid contribution -0.499 0.127 -0.497 0.716 sum -25.860 -12.500 -1.565 28.765 Atomic orbital electron populations 1.23437 0.93022 1.06999 1.05432 1.86902 1.08366 1.08010 1.98164 1.23127 0.97194 0.96235 1.07078 1.22620 0.94529 0.82696 1.03360 1.90566 1.02303 1.23822 1.97332 1.47048 0.96089 1.08382 1.75781 1.20248 0.89548 0.81624 0.78042 1.90794 1.56002 1.43640 1.47038 1.19404 0.87042 0.84487 0.79916 1.90805 1.55491 1.44070 1.47787 1.42732 1.07630 1.06887 1.68915 1.17207 0.80683 1.01091 1.08412 1.20839 0.92049 0.98189 0.96743 1.21084 0.95326 1.00561 1.07242 1.19458 0.85533 0.92465 0.92915 1.83967 1.10720 1.52364 1.60407 1.21370 0.87756 1.08422 1.29272 0.88851 1.25310 0.96573 0.97207 0.97347 1.70034 1.14468 1.25897 1.38941 0.85695 0.79049 0.79507 0.79116 1.19802 1.20213 1.19089 1.20003 0.90825 1.01881 1.07023 1.20391 0.95077 0.96723 0.97969 0.87535 0.90068 0.90076 0.88502 0.88503 0.90489 0.90486 0.73434 0.74724 0.85582 0.84973 0.91894 0.85766 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.41 10.76 101.05 1.09 0.68 16 2 S -0.24 -1.45 22.38 -107.50 -2.41 -3.86 16 3 C -0.09 -0.50 6.31 37.16 0.23 -0.27 16 4 C 0.05 0.31 6.23 37.16 0.23 0.54 16 5 O -0.14 -1.39 11.11 -29.65 -0.33 -1.72 16 6 N -0.57 -6.02 6.38 30.87 0.20 -5.83 16 7 C 0.52 6.76 8.03 -11.65 -0.09 6.66 16 8 O -0.50 -7.56 16.89 -12.70 -0.21 -7.77 16 9 C 0.51 7.16 7.73 -11.65 -0.09 7.07 16 10 O -0.51 -8.03 13.91 5.46 0.08 -7.96 16 11 N -0.62 -8.62 5.32 -10.27 -0.05 -8.68 16 12 C 0.02 0.31 6.30 -83.69 -0.53 -0.22 16 13 C -0.06 -1.11 8.68 -39.40 -0.34 -1.45 16 14 C -0.22 -4.77 9.16 -39.42 -0.36 -5.13 16 15 C 0.15 3.53 6.65 -39.07 -0.26 3.27 16 16 O -0.17 -4.77 9.75 0.08 0.00 -4.76 16 17 C -0.39 -10.70 9.48 30.88 0.29 -10.41 16 18 H 0.09 2.36 5.19 -52.49 -0.27 2.08 16 19 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -24.64 13.67 55.48 0.76 -23.88 16 21 Si 0.94 20.13 29.55 -169.99 -5.02 15.11 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 C -0.18 -3.54 9.98 -39.42 -0.39 -3.94 16 26 C -0.08 -1.37 9.96 -39.40 -0.39 -1.76 16 27 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.08 0.22 8.14 -51.92 -0.42 -0.20 16 29 H 0.08 0.22 8.14 -51.92 -0.42 -0.20 16 30 H 0.10 0.53 8.14 -51.92 -0.42 0.10 16 31 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.42 3.58 8.01 -40.82 -0.33 3.26 16 35 H 0.42 4.86 8.30 -40.82 -0.34 4.52 16 36 H 0.13 2.28 6.23 -52.48 -0.33 1.96 16 37 H 0.13 2.84 5.63 -52.49 -0.30 2.55 16 38 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 40 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 369.83 15.07 5.57 5.57 Total: -1.00 -32.90 369.83 -6.63 -39.53 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -4.50 Total: 8.21 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -0.71 Total: -3.97 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.90 Total: -38.38 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.47 Total: -22.21 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.41 Total: -3.86 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.90 -6.63 -39.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116882181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.271 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds