Wall clock time and date at job start Sat Apr 11 2020 05:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81397 * 102.99979 * 2 1 4 4 C 1.53001 * 109.47074 * 179.97438 * 3 2 1 5 5 O 1.42894 * 109.47400 * 180.02562 * 4 3 2 6 6 N 1.41602 * 114.00322 * 179.97438 * 5 4 3 7 7 C 1.34771 * 120.00049 * 179.97438 * 6 5 4 8 8 O 1.21371 * 120.00160 * 0.02562 * 7 6 5 9 9 C 1.49320 * 120.00097 * 179.97438 * 7 6 5 10 10 O 1.21390 * 119.99760 * 0.02562 * 9 7 6 11 11 N 1.34779 * 120.00328 * 180.02562 * 9 7 6 12 12 C 1.39734 * 120.00032 * 175.49969 * 11 9 7 13 13 C 1.38995 * 120.01030 * 35.14097 * 12 11 9 14 14 C 1.37968 * 119.99468 * 180.02562 * 13 12 11 15 15 C 1.38932 * 120.00613 * 0.02562 * 14 13 12 16 16 O 1.35767 * 119.99049 * 179.97438 * 15 14 13 17 17 C 1.34799 * 117.00198 * 5.34012 * 16 15 14 18 18 H 1.07999 * 119.99771 * 354.96831 * 17 16 15 19 19 C 1.38649 * 119.99946 * 174.96419 * 17 16 15 20 20 N 1.31558 * 120.00072 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99889 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47182 * 90.00051 * 21 19 17 23 23 H 1.48498 * 109.47194 * 210.00189 * 21 19 17 24 24 H 1.48505 * 109.46896 * 330.00061 * 21 19 17 25 25 C 1.38935 * 120.01769 * 0.24677 * 15 14 13 26 26 C 1.37967 * 120.00229 * 359.49421 * 25 15 14 27 27 H 1.08997 * 109.47101 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47383 * 300.00146 * 1 2 3 29 29 H 1.09007 * 109.46703 * 59.99889 * 1 2 3 30 30 H 1.09004 * 109.47358 * 60.00044 * 3 2 1 31 31 H 1.08998 * 109.47063 * 299.99400 * 3 2 1 32 32 H 1.09004 * 109.46804 * 59.99935 * 4 3 2 33 33 H 1.09004 * 109.47073 * 300.00179 * 4 3 2 34 34 H 0.97003 * 119.99610 * 0.02562 * 6 5 4 35 35 H 0.97001 * 119.99376 * 355.49650 * 11 9 7 36 36 H 1.08005 * 120.00070 * 0.02562 * 13 12 11 37 37 H 1.07998 * 119.99666 * 179.97438 * 14 13 12 38 38 H 0.96995 * 120.00149 * 179.97438 * 20 19 17 39 39 H 1.07995 * 120.00120 * 179.72497 * 25 15 14 40 40 H 1.07999 * 120.00513 * 180.22771 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 8 4.0639 3.3322 0.0012 6 7 5.4539 3.6024 0.0025 7 6 5.8926 4.8767 0.0026 8 8 5.0964 5.7927 0.0022 9 6 7.3584 5.1616 0.0045 10 8 8.1548 4.2455 0.0054 11 7 7.7973 6.4360 0.0051 12 6 9.1653 6.7037 0.1018 13 6 10.0844 5.8537 -0.5019 14 6 11.4351 6.1181 -0.4058 15 6 11.8766 7.2336 0.2948 16 8 13.2058 7.4932 0.3896 17 6 14.0368 6.6944 -0.3093 18 1 13.6438 5.8425 -0.8442 19 6 15.3959 6.9666 -0.3416 20 7 15.8746 8.0042 0.3104 21 14 16.5474 5.8601 -1.3108 22 1 16.6655 6.3659 -2.7019 23 1 17.8869 5.8569 -0.6698 24 1 16.0049 4.4778 -1.3310 25 6 10.9585 8.0805 0.9032 26 6 9.6074 7.8196 0.8029 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 1.8032 2.2371 0.8900 31 1 1.8032 2.2370 -0.8900 32 1 4.1616 1.4702 -0.8891 33 1 4.1609 1.4703 0.8909 34 1 6.0902 2.8703 0.0024 35 1 7.1634 7.1672 -0.0616 36 1 9.7413 4.9862 -1.0462 37 1 12.1493 5.4574 -0.8746 38 1 16.8255 8.1944 0.2881 39 1 11.3021 8.9451 1.4515 40 1 8.8935 8.4798 1.2728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116882181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:20 Heat of formation + Delta-G solvation = -71.311724 kcal Electronic energy + Delta-G solvation = -25136.652482 eV Core-core repulsion = 21045.851502 eV Total energy + Delta-G solvation = -4090.800980 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.10904 -40.78779 -39.92682 -38.68648 -38.24682 -35.68054 -34.25891 -34.12060 -31.91531 -31.69431 -29.92854 -29.78011 -27.42971 -25.95450 -24.41864 -23.97266 -22.96918 -21.52559 -20.39008 -19.83810 -19.39144 -18.75309 -18.10341 -17.60110 -17.47555 -17.07673 -16.87947 -16.32451 -16.16304 -15.95982 -15.51842 -15.34653 -15.23800 -15.13628 -14.70330 -14.67364 -14.60652 -14.18469 -13.80197 -13.57615 -13.41569 -13.38838 -13.27203 -13.11072 -12.81494 -12.70275 -12.43574 -12.14458 -12.11650 -11.46881 -11.18149 -11.10785 -10.85300 -10.59707 -10.32089 -9.86204 -8.79330 -8.70854 -8.46441 -6.13141 -0.07792 -0.02313 0.52990 0.63552 0.76374 1.37560 1.45730 1.50672 1.54268 1.93336 2.01451 2.19024 2.80138 3.04939 3.15779 3.38629 3.50251 3.63032 3.69166 4.07466 4.10183 4.14768 4.31244 4.33475 4.45276 4.46764 4.55022 4.57201 4.64503 4.88380 5.05563 5.07362 5.26375 5.30447 5.33051 5.48945 5.61357 5.67997 6.01928 6.05271 6.19032 6.63665 6.79070 6.98456 7.76422 8.76046 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.023340 B = 0.001620 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.390801 B =17282.147344 C =18330.811627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.277 6.277 3 C -0.077 4.077 4 C 0.043 3.957 5 O -0.148 6.148 6 N -0.557 5.557 7 C 0.533 3.467 8 O -0.524 6.524 9 C 0.520 3.480 10 O -0.522 6.522 11 N -0.611 5.611 12 C 0.047 3.953 13 C -0.066 4.066 14 C -0.228 4.228 15 C 0.114 3.886 16 O -0.225 6.225 17 C -0.414 4.414 18 H 0.102 0.898 19 C -0.019 4.019 20 N -0.916 5.916 21 Si 1.016 2.984 22 H -0.263 1.263 23 H -0.271 1.271 24 H -0.255 1.255 25 C -0.180 4.180 26 C -0.068 4.068 27 H 0.116 0.884 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.433 0.567 35 H 0.431 0.569 36 H 0.137 0.863 37 H 0.123 0.877 38 H 0.273 0.727 39 H 0.130 0.870 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.315 -13.497 -1.679 32.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.053 6.053 3 C -0.227 4.227 4 C -0.035 4.035 5 O -0.153 6.153 6 N -0.260 5.260 7 C 0.314 3.686 8 O -0.399 6.399 9 C 0.301 3.699 10 O -0.398 6.398 11 N -0.259 5.259 12 C -0.046 4.046 13 C -0.086 4.086 14 C -0.247 4.247 15 C 0.062 3.938 16 O -0.131 6.131 17 C -0.490 4.490 18 H 0.119 0.881 19 C -0.217 4.217 20 N -0.554 5.554 21 Si 0.835 3.165 22 H -0.188 1.188 23 H -0.196 1.196 24 H -0.178 1.178 25 C -0.200 4.200 26 C -0.087 4.087 27 H 0.134 0.866 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.278 0.722 35 H 0.271 0.729 36 H 0.154 0.846 37 H 0.141 0.859 38 H 0.082 0.918 39 H 0.148 0.852 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -28.536 -13.960 -1.498 31.803 hybrid contribution -0.051 0.411 -0.330 0.530 sum -28.587 -13.549 -1.828 31.688 Atomic orbital electron populations 1.23510 0.90294 1.07908 1.06282 1.87031 1.11470 1.08577 1.98262 1.23056 0.96342 0.95837 1.07448 1.22830 0.95370 0.81026 1.04227 1.90565 1.01333 1.26077 1.97362 1.46874 0.97022 1.08028 1.74075 1.19754 0.88518 0.82119 0.78233 1.90797 1.56166 1.44394 1.48496 1.19583 0.87627 0.84014 0.78667 1.90814 1.56204 1.44643 1.48133 1.42637 1.06454 1.07741 1.69023 1.17313 0.81964 0.99769 1.05532 1.20962 0.91268 0.99100 0.97232 1.21104 0.96441 1.00045 1.07154 1.19998 0.84930 0.94108 0.94715 1.83938 1.12496 1.53932 1.62704 1.21815 0.88512 1.08959 1.29744 0.88095 1.26526 0.98009 0.98794 0.98360 1.70168 1.14893 1.28541 1.41817 0.84622 0.76513 0.77722 0.77609 1.18800 1.19588 1.17832 1.20301 0.91751 1.01537 1.06371 1.20783 0.94390 0.96866 0.96695 0.86591 0.89232 0.89223 0.88157 0.88121 0.89607 0.89675 0.72235 0.72875 0.84561 0.85940 0.91780 0.85184 0.81683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.53 10.76 113.37 1.22 0.69 16 2 S -0.28 -2.95 22.38 -56.49 -1.26 -4.22 16 3 C -0.08 -0.75 6.31 71.98 0.45 -0.29 16 4 C 0.04 0.49 6.23 71.98 0.45 0.94 16 5 O -0.15 -2.70 11.11 -21.41 -0.24 -2.94 16 6 N -0.56 -10.39 6.38 -174.59 -1.11 -11.50 16 7 C 0.53 12.30 8.03 87.23 0.70 13.00 16 8 O -0.52 -14.36 16.89 14.07 0.24 -14.12 16 9 C 0.52 13.06 7.73 87.23 0.67 13.73 16 10 O -0.52 -15.26 13.91 -3.37 -0.05 -15.31 16 11 N -0.61 -15.01 5.32 -304.74 -1.62 -16.63 16 12 C 0.05 1.48 6.30 38.25 0.24 1.72 16 13 C -0.07 -2.41 8.68 22.39 0.19 -2.21 16 14 C -0.23 -9.92 9.16 22.37 0.20 -9.71 16 15 C 0.11 5.46 6.65 22.60 0.15 5.61 16 16 O -0.22 -13.15 9.75 -22.62 -0.22 -13.37 16 17 C -0.41 -23.73 9.48 67.92 0.64 -23.08 16 18 H 0.10 5.34 5.19 -2.91 -0.02 5.32 16 19 C -0.02 -1.05 5.49 84.83 0.47 -0.58 16 20 N -0.92 -55.24 13.67 21.61 0.30 -54.94 16 21 Si 1.02 42.37 29.55 68.60 2.03 44.40 16 22 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 24 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 25 C -0.18 -7.08 9.98 22.37 0.22 -6.86 16 26 C -0.07 -2.07 9.96 22.39 0.22 -1.85 16 27 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.09 0.29 8.14 -2.39 -0.02 0.28 16 29 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.43 6.26 8.01 -92.71 -0.74 5.52 16 35 H 0.43 8.38 8.30 -92.71 -0.77 7.61 16 36 H 0.14 4.71 6.23 -2.91 -0.02 4.69 16 37 H 0.12 5.47 5.63 -2.91 -0.02 5.45 16 38 H 0.27 15.09 8.31 -92.71 -0.77 14.31 16 39 H 0.13 4.91 8.06 -2.91 -0.02 4.88 16 40 H 0.17 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -74.55 369.83 3.51 -71.05 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: -0.39 Total: 26.47 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 5.84 Total: -8.90 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -2.44 Total: -83.08 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -0.27 Total: -45.74 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 16 Polarization: -2.95 SS G_CDS: -1.26 Total: -4.22 kcal Total: -74.55 3.51 -71.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116882181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.262 kcal (2) G-P(sol) polarization free energy of solvation -74.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds