Wall clock time and date at job start Sat Apr 11 2020 05:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00023 * 2 1 4 4 C 1.50699 * 109.46970 * 269.99517 * 3 2 1 5 5 H 1.07997 * 120.00248 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99925 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99754 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00020 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47020 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47098 * 119.99790 * 8 6 4 11 11 H 1.48496 * 109.47181 * 240.00184 * 8 6 4 12 12 C 1.34773 * 119.99942 * 179.97438 * 2 1 3 13 13 O 1.21361 * 120.00176 * 174.39628 * 12 2 1 14 14 C 1.49356 * 119.99964 * 354.41023 * 12 2 1 15 15 O 1.21374 * 120.00107 * 0.66383 * 14 12 2 16 16 N 1.34774 * 119.99904 * 180.67844 * 14 12 2 17 17 C 1.39733 * 119.99946 * 185.63451 * 16 14 12 18 18 C 1.38929 * 120.07407 * 209.19522 * 17 16 14 19 19 C 1.38099 * 119.92014 * 180.02562 * 18 17 16 20 20 C 1.38292 * 120.07535 * 359.97438 * 19 18 17 21 21 S 1.76201 * 119.91971 * 179.97438 * 20 19 18 22 22 C 1.81398 * 104.44872 * 89.99953 * 21 20 19 23 23 O 1.42103 * 104.27921 * 333.92590 * 21 20 19 24 24 O 1.42101 * 104.27361 * 206.06980 * 21 20 19 25 25 C 1.38291 * 120.15616 * 0.25557 * 20 19 18 26 26 C 1.38105 * 120.07162 * 359.48651 * 25 20 19 27 27 H 1.08999 * 109.47436 * 263.76742 * 1 2 3 28 28 H 1.09010 * 109.46840 * 23.76517 * 1 2 3 29 29 H 1.08998 * 109.47257 * 143.76046 * 1 2 3 30 30 H 1.09000 * 109.47394 * 29.99713 * 3 2 1 31 31 H 1.09004 * 109.47041 * 149.99902 * 3 2 1 32 32 H 0.96999 * 119.99600 * 179.97438 * 7 6 4 33 33 H 0.97002 * 120.00551 * 5.62587 * 16 14 12 34 34 H 1.07996 * 120.04017 * 359.97438 * 18 17 16 35 35 H 1.07997 * 119.95722 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.47405 * 59.99925 * 22 21 20 37 37 H 1.09000 * 109.46974 * 299.99647 * 22 21 20 38 38 H 1.09004 * 109.47015 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.96267 * 179.72742 * 25 20 19 40 40 H 1.08001 * 120.03256 * 180.23503 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0976 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5534 3.6180 -0.6732 8 14 3.4382 3.4167 -3.4339 9 1 2.8612 2.4161 -4.3673 10 1 2.8001 4.7370 -3.6681 11 1 4.9008 3.5255 -3.6665 12 6 2.1389 -1.1672 0.0005 13 8 3.3481 -1.1698 -0.1021 14 6 1.3974 -2.4575 0.1271 15 8 0.1870 -2.4556 0.2174 16 7 2.0724 -3.6240 0.1414 17 6 1.3749 -4.8348 0.1409 18 6 1.9304 -5.9584 0.7402 19 6 1.2385 -7.1536 0.7374 20 6 -0.0060 -7.2326 0.1396 21 16 -0.8849 -8.7598 0.1379 22 6 -1.8698 -8.7168 1.6606 23 8 0.1312 -9.7490 0.2290 24 8 -1.7274 -8.6779 -1.0035 25 6 -0.5598 -6.1173 -0.4619 26 6 0.1242 -4.9175 -0.4582 27 1 -0.3634 -0.1116 1.0216 28 1 -0.3633 0.9406 -0.4142 29 1 -0.3633 -0.8288 -0.6075 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1383 0.5139 32 1 4.0302 4.4439 -0.8504 33 1 3.0423 -3.6230 0.1518 34 1 2.9024 -5.8975 1.2068 35 1 1.6699 -8.0275 1.2027 36 1 -2.5430 -7.8600 1.6339 37 1 -1.2057 -8.6305 2.5206 38 1 -2.4530 -9.6341 1.7420 39 1 -1.5300 -6.1836 -0.9317 40 1 -0.3106 -4.0460 -0.9249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116952975.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:23 Heat of formation + Delta-G solvation = -87.788873 kcal Electronic energy + Delta-G solvation = -26463.523721 eV Core-core repulsion = 22372.008239 eV Total energy + Delta-G solvation = -4091.515482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.13829 -39.37912 -37.97060 -37.41071 -36.25878 -35.82676 -34.60888 -32.67168 -31.38382 -30.48440 -29.81304 -28.16934 -26.42366 -24.95502 -23.56378 -23.17905 -21.65462 -19.76578 -19.39739 -18.32870 -17.72066 -17.35279 -16.74571 -16.52233 -16.29273 -15.94243 -15.73711 -15.29063 -14.93516 -14.78721 -14.43119 -14.05143 -13.93085 -13.70128 -13.60458 -13.46079 -13.24780 -13.15765 -12.53043 -12.39396 -12.31481 -12.23011 -12.16768 -11.80608 -11.49344 -11.42386 -11.11762 -11.04063 -10.87699 -10.83655 -10.66247 -10.27822 -9.75766 -9.39219 -9.00310 -8.73158 -8.56002 -7.94247 -6.17269 -4.22780 -0.28190 0.41944 1.01200 1.64819 2.40121 2.55461 3.10575 3.23562 3.31311 3.35485 3.52329 3.64023 3.77343 3.80117 4.33662 4.35645 4.37310 4.54442 4.55440 4.62278 4.93924 5.09896 5.16988 5.18159 5.21243 5.52586 5.60153 5.79797 5.81297 5.88335 5.97548 6.02561 6.34424 6.55574 6.66733 6.92719 7.14779 7.23828 7.59781 7.78295 8.02291 8.04968 8.45847 8.81382 9.42658 10.91050 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.028488 B = 0.002103 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.642424 B =13313.874265 C =13356.135890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.560 5.560 3 C 0.242 3.758 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.493 3.507 13 O -0.519 6.519 14 C 0.510 3.490 15 O -0.493 6.493 16 N -0.654 5.654 17 C 0.212 3.788 18 C -0.170 4.170 19 C -0.001 4.001 20 C -0.686 4.686 21 S 2.505 3.495 22 C -0.651 4.651 23 O -0.941 6.941 24 O -0.939 6.939 25 C -0.001 4.001 26 C -0.150 4.150 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.265 0.735 33 H 0.427 0.573 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.145 0.855 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.921 -22.663 6.746 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.291 5.291 3 C 0.124 3.876 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.273 3.727 13 O -0.396 6.396 14 C 0.294 3.706 15 O -0.367 6.367 16 N -0.299 5.299 17 C 0.116 3.884 18 C -0.191 4.191 19 C -0.021 4.021 20 C -0.774 4.774 21 S 2.685 3.315 22 C -0.801 4.801 23 O -0.938 6.938 24 O -0.937 6.937 25 C -0.020 4.020 26 C -0.171 4.171 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.266 0.734 34 H 0.156 0.844 35 H 0.163 0.837 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.163 0.837 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.991 -22.954 6.166 25.782 hybrid contribution 0.745 1.241 -0.315 1.481 sum -9.246 -21.713 5.852 24.314 Atomic orbital electron populations 1.22068 0.79390 1.03469 1.01657 1.48157 1.07681 1.06730 1.66519 1.19560 0.92617 0.77184 0.98263 1.21390 1.37048 1.06598 0.91843 0.92161 1.24940 0.95123 0.96212 0.97748 1.69933 1.38066 1.14330 1.30809 0.86381 0.78135 0.78405 0.84163 1.19726 1.20832 1.20761 1.19433 0.87568 0.84232 0.81456 1.90766 1.13234 1.86316 1.49296 1.21152 0.87838 0.85717 0.75891 1.90689 1.13828 1.87135 1.45008 1.43517 1.12019 1.03462 1.70940 1.18158 0.92595 0.85157 0.92529 1.21027 1.02400 0.92434 1.03287 1.20687 0.91400 0.97322 0.92687 1.30378 1.09881 1.20662 1.16475 1.04959 0.75411 0.74299 0.76841 1.30236 1.15910 1.11859 1.22069 1.93579 1.56247 1.56930 1.87074 1.93587 1.68685 1.86217 1.45185 1.20820 0.98945 0.90246 0.92030 1.21429 0.95052 0.99397 1.01229 0.93025 0.90829 0.90059 0.93982 0.93479 0.92561 0.73360 0.84365 0.83695 0.84902 0.84984 0.85149 0.83714 0.83187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 9.27 59.85 0.55 1.85 16 2 N -0.56 -11.61 2.86 -183.50 -0.52 -12.14 16 3 C 0.24 6.04 5.09 -5.20 -0.03 6.01 16 4 C -0.53 -14.49 9.39 -34.44 -0.32 -14.82 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 8 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 C 0.49 9.73 7.72 -11.63 -0.09 9.64 16 13 O -0.52 -11.62 16.12 5.49 0.09 -11.53 16 14 C 0.51 8.03 7.53 -11.63 -0.09 7.94 16 15 O -0.49 -7.79 10.69 5.48 0.06 -7.73 16 16 N -0.65 -8.36 5.33 -10.29 -0.05 -8.42 16 17 C 0.21 2.47 6.35 -83.75 -0.53 1.94 16 18 C -0.17 -1.58 9.95 -39.38 -0.39 -1.97 16 19 C 0.00 -0.01 9.46 -39.61 -0.37 -0.39 16 20 C -0.69 -6.00 5.66 -39.54 -0.22 -6.22 16 21 S 2.50 18.13 5.80 -107.50 -0.62 17.51 16 22 C -0.65 -2.11 10.80 101.05 1.09 -1.02 16 23 O -0.94 -9.56 17.12 -57.54 -0.98 -10.55 16 24 O -0.94 -9.95 17.11 -57.54 -0.98 -10.94 16 25 C 0.00 -0.01 9.46 -39.61 -0.37 -0.38 16 26 C -0.15 -1.77 8.68 -39.38 -0.34 -2.11 16 27 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 28 H 0.07 1.22 8.03 -51.92 -0.42 0.81 16 29 H 0.08 1.30 5.84 -51.93 -0.30 0.99 16 30 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 31 H 0.05 1.29 7.51 -51.93 -0.39 0.90 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.43 4.88 8.28 -40.82 -0.34 4.54 16 34 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 35 H 0.15 0.90 7.56 -52.49 -0.40 0.50 16 36 H 0.13 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 38 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 39 H 0.15 1.17 7.56 -52.49 -0.40 0.77 16 40 H 0.15 1.90 6.12 -52.49 -0.32 1.58 16 LS Contribution 359.69 15.07 5.42 5.42 Total: -1.00 -36.23 359.69 -7.75 -43.98 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -4.64 Total: 0.89 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.22 Total: 2.11 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.16 Total: -45.40 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -1.82 Total: -40.75 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 18.13 SS G_CDS: -0.62 Total: 17.51 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.23 -7.75 -43.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116952975.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.810 kcal (2) G-P(sol) polarization free energy of solvation -36.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds