Wall clock time and date at job start Sat Apr 11 2020 05:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21609 * 119.99876 * 0.02562 * 13 12 2 15 15 C 1.47386 * 120.00078 * 180.02562 * 13 12 2 16 16 C 1.39746 * 120.21123 * 359.72673 * 15 13 12 17 17 C 1.37736 * 119.92651 * 179.72117 * 16 15 13 18 18 N 1.48025 * 119.81538 * 180.25552 * 17 16 15 19 19 O 1.21795 * 120.00260 * 180.29755 * 18 17 16 20 20 O 1.21802 * 119.99394 * 0.30087 * 18 17 16 21 21 C 1.38646 * 120.37072 * 0.55142 * 17 16 15 22 22 C 1.37904 * 120.43609 * 359.72733 * 21 17 16 23 23 C 1.39041 * 120.06158 * 359.97438 * 22 21 17 24 24 S 1.76197 * 120.18892 * 179.97438 * 23 22 21 25 25 C 1.81402 * 102.99808 * 0.02562 * 24 23 22 26 26 C 1.52998 * 109.46814 * 179.97438 * 25 24 23 27 27 O 1.42907 * 109.46690 * 180.02562 * 26 25 24 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 32 32 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 33 33 H 1.08003 * 120.03567 * 359.97438 * 16 15 13 34 34 H 1.08009 * 119.78145 * 179.69634 * 21 17 16 35 35 H 1.08000 * 119.97213 * 179.97438 * 22 21 17 36 36 H 1.08994 * 109.47070 * 299.99973 * 25 24 23 37 37 H 1.09002 * 109.46996 * 59.99753 * 25 24 23 38 38 H 1.09002 * 109.47448 * 299.99519 * 26 25 24 39 39 H 1.08996 * 109.47409 * 60.00536 * 26 25 24 40 40 H 0.96708 * 113.99636 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8582 1.1619 -2.4116 15 6 2.6378 -0.7130 -3.5608 16 6 2.9765 -2.0675 -3.5018 17 6 3.4291 -2.7125 -4.6315 18 7 3.7817 -4.1487 -4.5677 19 8 4.1874 -4.7211 -5.5632 20 8 3.6660 -4.7580 -3.5194 21 6 3.5620 -2.0226 -5.8268 22 6 3.2377 -0.6842 -5.9007 23 6 2.7732 -0.0168 -4.7728 24 16 2.3585 1.6933 -4.8633 25 6 2.7028 2.1055 -6.5960 26 6 2.3873 3.5823 -6.8412 27 8 2.6580 3.9069 -8.2064 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 0.7096 1.1617 3.4844 32 1 2.2491 -1.6316 -1.1527 33 1 2.8795 -2.6090 -2.5724 34 1 3.9225 -2.5366 -6.7057 35 1 3.3446 -0.1540 -6.8355 36 1 3.7544 1.9174 -6.8122 37 1 2.0823 1.4888 -7.2464 38 1 1.3355 3.7700 -6.6253 39 1 3.0075 4.1992 -6.1909 40 1 2.4805 4.8299 -8.4338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136736998.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:28 Heat of formation + Delta-G solvation = -60.058533 kcal Electronic energy + Delta-G solvation = -26550.577294 eV Core-core repulsion = 22460.264290 eV Total energy + Delta-G solvation = -4090.313005 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.23999 -40.17213 -38.37578 -37.37061 -36.61545 -35.09602 -32.91669 -32.41231 -31.90708 -31.12731 -28.89969 -26.81517 -25.37153 -24.69685 -23.32070 -22.89085 -21.37601 -19.95718 -19.37974 -18.71648 -18.21115 -17.95986 -17.58674 -17.11898 -16.25992 -16.00055 -15.66797 -15.20736 -15.09943 -14.96998 -14.73493 -14.33895 -14.11370 -13.48198 -13.28648 -12.94906 -12.63889 -12.54325 -12.28563 -11.91496 -11.83152 -11.61931 -11.26705 -11.21078 -11.18913 -11.05787 -10.96082 -10.67103 -10.60171 -10.42052 -10.36191 -10.29078 -9.71300 -9.19417 -9.15862 -8.67184 -8.24177 -7.75911 -6.21089 -4.30896 -0.40558 0.36875 0.93421 1.06549 1.31471 2.04973 2.58626 3.20349 3.28667 3.31453 3.55977 3.58561 3.92626 4.01990 4.20183 4.30034 4.44007 4.47178 4.60925 4.63988 4.89974 5.01331 5.12246 5.13797 5.20471 5.25684 5.33631 5.35664 5.54737 5.78964 6.29180 6.69575 6.81142 7.00204 7.14958 7.19170 7.36353 7.57674 7.57871 7.76749 8.02067 8.37758 8.57418 8.81131 9.36754 10.84865 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.008565 B = 0.003702 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3268.179125 B = 7561.206008 C =10534.929110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.265 3.735 3 H 0.054 0.946 4 C -0.538 4.538 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.692 5.692 13 C 0.540 3.460 14 O -0.518 6.518 15 C -0.116 4.116 16 C 0.001 3.999 17 C -0.067 4.067 18 N 0.034 4.966 19 O -0.168 6.168 20 O -0.157 6.157 21 C -0.016 4.016 22 C -0.147 4.147 23 C -0.013 4.013 24 S 0.082 5.918 25 C -0.191 4.191 26 C 0.097 3.903 27 O -0.573 6.573 28 H 0.093 0.907 29 H 0.028 0.972 30 H 0.016 0.984 31 H 0.265 0.735 32 H 0.390 0.610 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.151 0.849 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.230 1.418 -19.317 19.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.164 3.836 3 H 0.071 0.929 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.135 4.135 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.339 5.339 13 C 0.324 3.676 14 O -0.399 6.399 15 C -0.128 4.128 16 C -0.021 4.021 17 C -0.155 4.155 18 N 0.552 4.448 19 O -0.382 6.382 20 O -0.374 6.374 21 C -0.038 4.038 22 C -0.172 4.172 23 C -0.130 4.130 24 S 0.333 5.667 25 C -0.338 4.338 26 C 0.018 3.982 27 O -0.379 6.379 28 H 0.112 0.888 29 H 0.047 0.953 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.224 0.776 33 H 0.180 0.820 34 H 0.175 0.825 35 H 0.169 0.831 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.465 3.424 -18.415 18.892 hybrid contribution 0.861 -1.772 -0.087 1.971 sum 3.326 1.652 -18.502 18.871 Atomic orbital electron populations 1.22096 0.98029 0.99397 1.01152 1.18888 0.91270 0.94069 0.79407 0.92862 1.21225 1.32773 1.13448 0.90143 0.91824 1.24870 0.94654 0.94900 0.99109 1.69898 1.35709 1.22360 1.23967 0.86373 0.78687 0.79598 0.82381 1.19567 1.20822 1.20788 1.46552 1.63563 1.13670 1.10162 1.17776 0.79809 0.86926 0.83042 1.90670 1.51466 1.14789 1.82948 1.19931 1.05521 0.92759 0.94555 1.21183 0.89849 0.93192 0.97920 1.20862 1.14933 0.81847 0.97828 1.43514 0.97910 1.03024 1.00309 1.94513 1.47686 1.69561 1.26438 1.94580 1.57314 1.66518 1.18960 1.20965 0.92826 0.93720 0.96284 1.21127 1.03771 0.94051 0.98295 1.22686 0.95188 1.00063 0.95041 1.87545 1.75875 0.99109 1.04155 1.24246 1.06246 1.00542 1.02771 1.21584 1.00232 0.93059 0.83298 1.86440 1.90779 1.33546 1.27158 0.88845 0.95272 0.96501 0.92510 0.77581 0.81975 0.82474 0.83097 0.88720 0.88738 0.92325 0.92304 0.76709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.26 37.16 0.34 -3.16 16 2 C 0.26 6.36 2.56 -69.08 -0.18 6.18 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 4 C -0.54 -13.71 8.73 -34.44 -0.30 -14.01 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -23.99 11.32 55.43 0.63 -23.36 16 8 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 9 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.69 -13.55 5.02 -56.02 -0.28 -13.83 16 13 C 0.54 9.99 7.71 -12.54 -0.10 9.89 16 14 O -0.52 -10.87 13.43 5.27 0.07 -10.80 16 15 C -0.12 -1.69 5.89 -104.78 -0.62 -2.31 16 16 C 0.00 0.01 9.03 -39.20 -0.35 -0.35 16 17 C -0.07 -0.83 6.84 -79.98 -0.55 -1.38 16 18 N 0.03 0.48 4.45 33.95 0.15 0.63 16 19 O -0.17 -2.35 18.43 -29.46 -0.54 -2.89 16 20 O -0.16 -2.39 18.42 -29.46 -0.54 -2.93 16 21 C -0.02 -0.16 9.53 -39.55 -0.38 -0.54 16 22 C -0.15 -1.42 9.36 -39.41 -0.37 -1.78 16 23 C -0.01 -0.16 6.16 -38.46 -0.24 -0.40 16 24 S 0.08 1.03 18.83 -107.50 -2.02 -1.00 16 25 C -0.19 -1.68 4.71 37.16 0.17 -1.50 16 26 C 0.10 0.78 7.05 37.16 0.26 1.04 16 27 O -0.57 -4.48 13.66 -35.23 -0.48 -4.96 16 28 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.39 6.67 6.57 -40.82 -0.27 6.40 16 33 H 0.16 2.02 5.93 -52.48 -0.31 1.71 16 34 H 0.16 1.20 7.59 -52.48 -0.40 0.80 16 35 H 0.15 1.05 5.90 -52.49 -0.31 0.74 16 36 H 0.09 0.77 7.75 -51.93 -0.40 0.37 16 37 H 0.09 0.77 7.75 -51.92 -0.40 0.36 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.39 1.24 9.12 45.56 0.42 1.66 16 LS Contribution 359.44 15.07 5.42 5.42 Total: -1.00 -30.87 359.44 -8.63 -39.50 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -3.62 Total: 5.67 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -2.39 Total: -6.62 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.50 Total: -36.56 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -1.50 Total: -21.58 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.02 Total: -1.00 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.87 -8.63 -39.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136736998.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.558 kcal (2) G-P(sol) polarization free energy of solvation -30.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds