Wall clock time and date at job start Sat Apr 11 2020 05:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21609 * 119.99876 * 0.02562 * 13 12 2 15 15 C 1.47386 * 120.00078 * 180.02562 * 13 12 2 16 16 C 1.39746 * 120.21123 * 359.72673 * 15 13 12 17 17 C 1.37736 * 119.92651 * 179.72117 * 16 15 13 18 18 N 1.48025 * 119.81538 * 180.25552 * 17 16 15 19 19 O 1.21795 * 120.00260 * 180.29755 * 18 17 16 20 20 O 1.21802 * 119.99394 * 0.30087 * 18 17 16 21 21 C 1.38646 * 120.37072 * 0.55142 * 17 16 15 22 22 C 1.37904 * 120.43609 * 359.72733 * 21 17 16 23 23 C 1.39041 * 120.06158 * 359.97438 * 22 21 17 24 24 S 1.76197 * 120.18892 * 179.97438 * 23 22 21 25 25 C 1.81402 * 102.99808 * 0.02562 * 24 23 22 26 26 C 1.52998 * 109.46814 * 179.97438 * 25 24 23 27 27 O 1.42907 * 109.46690 * 180.02562 * 26 25 24 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 32 32 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 33 33 H 1.08003 * 120.03567 * 359.97438 * 16 15 13 34 34 H 1.08009 * 119.78145 * 179.69634 * 21 17 16 35 35 H 1.08000 * 119.97213 * 179.97438 * 22 21 17 36 36 H 1.08994 * 109.47070 * 299.99973 * 25 24 23 37 37 H 1.09002 * 109.46996 * 59.99753 * 25 24 23 38 38 H 1.09002 * 109.47448 * 299.99519 * 26 25 24 39 39 H 1.08996 * 109.47409 * 60.00536 * 26 25 24 40 40 H 0.96708 * 113.99636 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8582 1.1619 -2.4116 15 6 2.6378 -0.7130 -3.5608 16 6 2.9765 -2.0675 -3.5018 17 6 3.4291 -2.7125 -4.6315 18 7 3.7817 -4.1487 -4.5677 19 8 4.1874 -4.7211 -5.5632 20 8 3.6660 -4.7580 -3.5194 21 6 3.5620 -2.0226 -5.8268 22 6 3.2377 -0.6842 -5.9007 23 6 2.7732 -0.0168 -4.7728 24 16 2.3585 1.6933 -4.8633 25 6 2.7028 2.1055 -6.5960 26 6 2.3873 3.5823 -6.8412 27 8 2.6580 3.9069 -8.2064 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 0.7096 1.1617 3.4844 32 1 2.2491 -1.6316 -1.1527 33 1 2.8795 -2.6090 -2.5724 34 1 3.9225 -2.5366 -6.7057 35 1 3.3446 -0.1540 -6.8355 36 1 3.7544 1.9174 -6.8122 37 1 2.0823 1.4888 -7.2464 38 1 1.3355 3.7700 -6.6253 39 1 3.0075 4.1992 -6.1909 40 1 2.4805 4.8299 -8.4338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136736998.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:27 Heat of formation + Delta-G solvation = -80.739818 kcal Electronic energy + Delta-G solvation = -26551.474102 eV Core-core repulsion = 22460.264290 eV Total energy + Delta-G solvation = -4091.209812 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.29304 -41.40362 -39.63044 -37.94811 -37.69596 -36.85333 -34.56727 -33.40767 -33.12945 -31.89329 -30.61274 -27.85110 -27.36893 -25.81725 -24.22884 -23.85055 -22.80676 -21.48768 -20.65371 -19.77526 -19.16985 -18.69956 -18.63824 -18.52122 -17.68338 -17.25726 -16.64912 -16.57145 -16.16956 -16.05301 -15.93901 -15.78156 -14.95020 -14.74986 -14.53644 -14.36622 -13.75417 -13.64056 -13.51397 -13.28320 -13.03034 -12.90869 -12.78416 -12.71437 -12.54372 -12.31884 -12.30793 -12.29935 -12.16282 -11.74193 -11.54046 -11.12740 -11.01480 -10.68784 -10.65505 -10.44432 -9.91643 -8.78672 -8.20435 -6.37311 -1.41688 -0.63586 0.01115 0.05041 0.31580 1.20990 1.43064 1.45214 1.51277 1.56605 2.18753 2.27787 2.44618 3.10604 3.12424 3.21038 3.37899 3.52258 3.62154 3.82342 3.91648 4.05218 4.19577 4.20249 4.37492 4.45295 4.57154 4.64480 4.71040 4.73386 4.88780 4.89873 5.05260 5.25606 5.36847 5.51574 5.63080 5.82851 6.05736 6.46927 6.67240 6.74516 6.79521 7.18956 7.37243 8.85813 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.008565 B = 0.003702 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3268.179125 B = 7561.206008 C =10534.929110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.274 3.726 3 H 0.010 0.990 4 C -0.550 4.550 5 H 0.071 0.929 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.968 3.032 9 H -0.263 1.263 10 H -0.282 1.282 11 H -0.278 1.278 12 N -0.696 5.696 13 C 0.539 3.461 14 O -0.550 6.550 15 C -0.136 4.136 16 C 0.004 3.996 17 C -0.076 4.076 18 N 0.036 4.964 19 O -0.148 6.148 20 O -0.202 6.202 21 C 0.006 3.994 22 C -0.129 4.129 23 C -0.008 4.008 24 S 0.026 5.974 25 C -0.171 4.171 26 C 0.096 3.904 27 O -0.584 6.584 28 H 0.069 0.931 29 H 0.038 0.962 30 H 0.017 0.983 31 H 0.266 0.734 32 H 0.402 0.598 33 H 0.160 0.840 34 H 0.192 0.808 35 H 0.188 0.812 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.351 0.505 -22.032 22.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.171 3.829 3 H 0.028 0.972 4 C -0.588 4.588 5 H 0.089 0.911 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.793 3.207 9 H -0.187 1.187 10 H -0.208 1.208 11 H -0.204 1.204 12 N -0.345 5.345 13 C 0.326 3.674 14 O -0.431 6.431 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.163 4.163 18 N 0.552 4.448 19 O -0.369 6.369 20 O -0.408 6.408 21 C -0.016 4.016 22 C -0.155 4.155 23 C -0.125 4.125 24 S 0.278 5.722 25 C -0.319 4.319 26 C 0.017 3.983 27 O -0.394 6.394 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.238 0.762 33 H 0.178 0.822 34 H 0.209 0.791 35 H 0.205 0.795 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 3.573 2.492 -21.068 21.514 hybrid contribution 0.546 -1.369 0.499 1.556 sum 4.119 1.124 -20.569 21.008 Atomic orbital electron populations 1.21909 0.97952 0.99512 0.99957 1.18426 0.91263 0.92165 0.81042 0.97248 1.21549 1.32769 1.13641 0.90855 0.91115 1.25710 0.94795 0.95532 1.02074 1.70031 1.36770 1.23698 1.24628 0.85351 0.78155 0.78566 0.78627 1.18661 1.20821 1.20395 1.46268 1.64404 1.14160 1.09648 1.18271 0.78835 0.86680 0.83657 1.90670 1.52389 1.16171 1.83915 1.19414 1.08367 0.93280 0.93731 1.21080 0.89629 0.92596 0.98497 1.20931 1.15798 0.81014 0.98567 1.43683 0.97571 1.03535 1.00039 1.94482 1.46401 1.69896 1.26142 1.94599 1.59468 1.67253 1.19441 1.21390 0.90532 0.93547 0.96149 1.21491 1.01811 0.93787 0.98366 1.22778 0.94865 0.99714 0.95187 1.87745 1.75974 1.00033 1.08415 1.24165 1.07308 1.01300 0.99128 1.21541 1.00440 0.92622 0.83667 1.86377 1.90865 1.35518 1.26612 0.91197 0.94321 0.96414 0.92448 0.76242 0.82218 0.79099 0.79496 0.87358 0.87306 0.92175 0.92226 0.74477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.61 9.26 71.98 0.67 -5.95 16 2 C 0.27 13.75 2.56 44.24 0.11 13.86 16 3 H 0.01 0.56 7.58 -2.39 -0.02 0.54 16 4 C -0.55 -28.67 8.73 25.60 0.22 -28.45 16 5 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 6 C 0.02 1.03 5.30 84.66 0.45 1.48 16 7 N -0.91 -51.15 11.32 21.45 0.24 -50.90 16 8 Si 0.97 41.75 29.54 68.60 2.03 43.78 16 9 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 11 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 12 N -0.70 -28.28 5.02 -449.41 -2.26 -30.54 16 13 C 0.54 20.61 7.71 86.65 0.67 21.28 16 14 O -0.55 -24.13 13.43 -4.06 -0.05 -24.18 16 15 C -0.14 -3.93 5.89 -19.97 -0.12 -4.05 16 16 C 0.00 0.10 9.03 22.52 0.20 0.30 16 17 C -0.08 -1.70 6.84 36.35 0.25 -1.46 16 18 N 0.04 0.95 4.45 -46.51 -0.21 0.74 16 19 O -0.15 -3.71 18.43 18.89 0.35 -3.37 16 20 O -0.20 -6.07 18.42 18.88 0.35 -5.72 16 21 C 0.01 0.09 9.53 22.29 0.21 0.30 16 22 C -0.13 -1.98 9.36 22.38 0.21 -1.77 16 23 C -0.01 -0.19 6.16 23.00 0.14 -0.05 16 24 S 0.03 0.63 18.83 -56.49 -1.06 -0.43 16 25 C -0.17 -2.52 4.71 71.98 0.34 -2.18 16 26 C 0.10 1.34 7.05 71.98 0.51 1.84 16 27 O -0.58 -7.50 13.66 -148.98 -2.04 -9.53 16 28 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16 29 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 32 H 0.40 14.16 6.57 -92.71 -0.61 13.55 16 33 H 0.16 4.05 5.93 -2.91 -0.02 4.03 16 34 H 0.19 1.79 7.59 -2.91 -0.02 1.76 16 35 H 0.19 1.55 5.90 -2.91 -0.02 1.53 16 36 H 0.11 1.34 7.75 -2.39 -0.02 1.32 16 37 H 0.11 1.33 7.75 -2.39 -0.02 1.31 16 38 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.40 1.61 9.12 -74.05 -0.68 0.94 16 Total: -1.00 -69.00 359.44 1.05 -67.94 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -0.16 Total: 17.03 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 3.87 Total: -4.83 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -2.22 Total: -80.70 kcal Atomic # 8 Polarization: -41.41 SS G_CDS: -1.39 Total: -42.80 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -1.06 Total: -0.43 kcal Total: -69.00 1.05 -67.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136736998.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.795 kcal (2) G-P(sol) polarization free energy of solvation -68.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds