Wall clock time and date at job start Sat Apr 11 2020 05:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.81401 * 109.47150 * 2 1 4 4 O 1.42101 * 110.54062 * 68.37532 * 3 2 1 5 5 O 1.42094 * 110.54184 * 291.62459 * 3 2 1 6 6 C 1.76199 * 104.44838 * 179.97438 * 3 2 1 7 7 C 1.38376 * 120.26600 * 270.01945 * 6 3 2 8 8 N 1.31894 * 121.19227 * 179.97438 * 7 6 3 9 9 C 1.32217 * 121.81147 * 359.77446 * 8 7 6 10 10 O 1.35429 * 119.80575 * 180.26707 * 9 8 7 11 11 C 1.40345 * 120.39020 * 0.48907 * 9 8 7 12 12 C 1.47417 * 120.60438 * 179.77401 * 11 9 8 13 13 O 1.21629 * 119.99785 * 45.80748 * 12 11 9 14 14 N 1.34779 * 120.00331 * 225.80538 * 12 11 9 15 15 C 1.36905 * 119.99826 * 176.28391 * 14 12 11 16 16 H 1.07993 * 120.00383 * 331.04885 * 15 14 12 17 17 C 1.39030 * 119.99519 * 151.05018 * 15 14 12 18 18 N 1.31379 * 119.99905 * 351.40121 * 17 15 14 19 19 Si 1.86797 * 119.99799 * 171.40839 * 17 15 14 20 20 H 1.48493 * 109.47204 * 179.97438 * 19 17 15 21 21 H 1.48506 * 109.47111 * 299.99646 * 19 17 15 22 22 H 1.48502 * 109.47201 * 59.99480 * 19 17 15 23 23 C 1.46502 * 119.99854 * 356.28351 * 14 12 11 24 24 C 1.52998 * 117.49632 * 133.17726 * 23 14 12 25 25 C 1.52992 * 117.49654 * 64.55644 * 23 14 12 26 26 C 1.38319 * 120.26947 * 90.00411 * 6 3 2 27 27 H 1.09007 * 109.47221 * 60.00051 * 1 2 3 28 28 H 1.09003 * 109.47227 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47512 * 300.00185 * 1 2 3 30 30 H 1.09001 * 109.47512 * 239.99815 * 2 1 3 31 31 H 1.09007 * 109.47221 * 119.99949 * 2 1 3 32 32 H 1.07994 * 119.40100 * 359.97438 * 7 6 3 33 33 H 0.96704 * 114.00058 * 270.22188 * 10 9 8 34 34 H 0.97001 * 119.99532 * 175.03519 * 18 17 15 35 35 H 1.09000 * 115.55003 * 278.88700 * 23 14 12 36 36 H 1.09000 * 117.49808 * 0.02562 * 24 23 14 37 37 H 1.09005 * 117.49562 * 145.02099 * 24 23 14 38 38 H 1.09006 * 117.49866 * 214.97532 * 25 23 14 39 39 H 1.08999 * 117.50041 * 0.02562 * 25 23 14 40 40 H 1.08002 * 120.82720 * 0.03837 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3438 1.2370 5 8 1.8385 2.3438 -1.2369 6 6 3.8898 1.5560 0.0008 7 6 4.5841 1.4947 1.1962 8 7 5.8977 1.3787 1.2181 9 6 6.6101 1.3114 0.1063 10 8 7.9568 1.1872 0.1761 11 6 5.9792 1.3726 -1.1459 12 6 6.7693 1.3029 -2.3885 13 8 7.6422 0.4644 -2.5079 14 7 6.5244 2.1683 -3.3923 15 6 7.3075 2.1536 -4.5151 16 1 8.3379 1.8367 -4.4508 17 6 6.7763 2.5469 -5.7383 18 7 5.4866 2.7698 -5.8531 19 14 7.8961 2.7579 -7.2184 20 1 7.0905 3.1791 -8.3925 21 1 8.9186 3.7933 -6.9219 22 1 8.5695 1.4686 -7.5175 23 6 5.4201 3.1247 -3.2818 24 6 5.7078 4.5815 -3.6501 25 6 5.5127 4.1870 -2.1848 26 6 4.5849 1.4949 -1.1936 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.0404 1.5427 2.1281 33 1 8.4290 2.0308 0.1986 34 1 5.1261 3.1132 -6.6856 35 1 4.4317 2.7310 -3.5190 36 1 6.7186 4.8283 -3.9749 37 1 4.9086 5.1466 -4.1298 38 1 4.5852 4.4926 -1.7005 39 1 6.3955 4.1747 -1.5455 40 1 4.0654 1.5411 -2.1393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142370460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:34 Heat of formation + Delta-G solvation = -58.514124 kcal Electronic energy + Delta-G solvation = -28568.979892 eV Core-core repulsion = 24478.733858 eV Total energy + Delta-G solvation = -4090.246034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.62022 -38.53319 -37.18169 -37.08653 -36.09400 -36.01791 -33.42717 -33.24609 -32.58786 -31.26408 -30.50083 -25.71819 -24.48427 -24.18825 -23.38104 -21.86762 -21.41255 -20.15830 -19.02492 -18.57838 -17.62777 -17.08292 -16.96998 -16.44237 -16.11428 -15.81193 -15.57682 -15.26861 -14.47892 -14.47356 -14.22946 -13.81382 -13.62532 -13.40171 -13.27903 -13.09862 -12.77342 -12.56569 -12.21709 -12.17158 -12.05185 -11.85368 -11.83854 -11.46615 -11.22923 -11.16175 -10.81198 -10.75030 -10.65751 -10.46672 -10.13762 -9.93899 -9.58566 -9.47514 -9.05157 -8.96344 -8.51709 -7.83331 -6.42719 -4.05895 -0.10976 0.55648 1.07980 2.71204 3.08727 3.18545 3.19787 3.23368 3.56180 3.72294 3.91962 3.99111 4.03470 4.34674 4.41342 4.54511 4.56468 4.71354 4.82127 4.90759 4.99840 5.11512 5.27201 5.34173 5.41210 5.52116 5.62459 5.66471 5.72494 5.87453 5.90534 6.10064 6.19129 6.36845 6.65913 6.82293 7.02841 7.42681 7.52996 7.75098 7.97701 8.31931 9.00985 9.20478 9.77725 10.60464 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013746 B = 0.004462 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.426317 B = 6273.675467 C = 7324.252508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.611 4.611 3 S 2.505 3.495 4 O -0.936 6.936 5 O -0.925 6.925 6 C -0.738 4.738 7 C 0.218 3.782 8 N -0.517 5.517 9 C 0.392 3.608 10 O -0.461 6.461 11 C -0.167 4.167 12 C 0.486 3.514 13 O -0.561 6.561 14 N -0.402 5.402 15 C -0.311 4.311 16 H 0.098 0.902 17 C 0.044 3.956 18 N -0.860 5.860 19 Si 0.924 3.076 20 H -0.283 1.283 21 H -0.273 1.273 22 H -0.271 1.271 23 C 0.115 3.885 24 C -0.135 4.135 25 C -0.224 4.224 26 C 0.061 3.939 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.175 0.825 33 H 0.405 0.595 34 H 0.271 0.729 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.471 -0.466 10.510 14.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.741 4.741 3 S 2.682 3.318 4 O -0.934 6.934 5 O -0.922 6.922 6 C -0.826 4.826 7 C 0.057 3.943 8 N -0.237 5.237 9 C 0.213 3.787 10 O -0.269 6.269 11 C -0.175 4.175 12 C 0.274 3.726 13 O -0.445 6.445 14 N -0.119 5.119 15 C -0.439 4.439 16 H 0.116 0.884 17 C -0.163 4.163 18 N -0.496 5.496 19 Si 0.750 3.250 20 H -0.208 1.208 21 H -0.198 1.198 22 H -0.196 1.196 23 C 0.010 3.990 24 C -0.172 4.172 25 C -0.262 4.262 26 C 0.035 3.965 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.157 0.843 31 H 0.154 0.846 32 H 0.192 0.808 33 H 0.264 0.736 34 H 0.082 0.918 35 H 0.131 0.869 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.187 -0.741 10.962 14.322 hybrid contribution 0.835 0.034 -1.568 1.777 sum -8.351 -0.707 9.394 12.590 Atomic orbital electron populations 1.21562 0.90204 1.05261 1.03751 1.30230 1.07122 1.24321 1.12422 1.05377 0.73801 0.77648 0.74953 1.93561 1.83236 1.71974 1.44594 1.93614 1.82900 1.71661 1.44066 1.31376 1.27281 1.23516 1.00463 1.22315 0.88761 0.86947 0.96278 1.67315 1.08490 1.16433 1.31424 1.19453 0.85276 0.87207 0.86716 1.84719 1.12386 1.34364 1.95431 1.21503 0.95003 1.04767 0.96245 1.17420 0.87253 0.84165 0.83767 1.90693 1.35168 1.37332 1.81265 1.43024 1.27034 1.26899 1.14952 1.19532 0.94634 1.45645 0.84076 0.88418 1.25357 0.95757 0.96703 0.98443 1.69873 1.10875 1.41183 1.27688 0.86036 0.79666 0.79116 0.80172 1.20775 1.19844 1.19639 1.21359 0.92078 0.86115 0.99419 1.22722 1.02492 0.97898 0.94129 1.23558 1.02134 1.07295 0.93230 1.21647 0.93072 0.84202 0.97591 0.90596 0.89736 0.90780 0.84334 0.84561 0.80765 0.73554 0.91813 0.86895 0.88961 0.89309 0.89136 0.90232 0.82050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.92 37.15 0.37 -0.64 16 2 C -0.61 -4.61 6.70 37.15 0.25 -4.37 16 3 S 2.50 28.58 5.17 -107.50 -0.56 28.02 16 4 O -0.94 -12.14 17.13 -57.54 -0.99 -13.12 16 5 O -0.93 -13.62 17.19 -57.54 -0.99 -14.61 16 6 C -0.74 -10.13 5.67 -39.50 -0.22 -10.35 16 7 C 0.22 2.95 10.62 -17.47 -0.19 2.77 16 8 N -0.52 -8.36 10.37 -12.96 -0.13 -8.50 16 9 C 0.39 7.11 7.75 -16.59 -0.13 6.98 16 10 O -0.46 -8.17 12.53 -29.76 -0.37 -8.54 16 11 C -0.17 -3.27 4.61 -104.69 -0.48 -3.76 16 12 C 0.49 11.67 6.94 -12.52 -0.09 11.58 16 13 O -0.56 -15.44 16.20 -6.53 -0.11 -15.55 16 14 N -0.40 -9.77 2.91 -108.94 -0.32 -10.08 16 15 C -0.31 -8.19 8.71 -14.99 -0.13 -8.32 16 16 H 0.10 2.69 7.56 -52.49 -0.40 2.29 16 17 C 0.04 1.09 4.83 -17.45 -0.08 1.01 16 18 N -0.86 -21.48 10.77 55.50 0.60 -20.88 16 19 Si 0.92 19.79 29.57 -169.99 -5.03 14.77 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 C 0.12 2.47 2.26 -67.93 -0.15 2.32 16 24 C -0.13 -2.69 8.63 -26.73 -0.23 -2.92 16 25 C -0.22 -4.09 8.49 -26.74 -0.23 -4.32 16 26 C 0.06 1.03 7.11 -38.87 -0.28 0.75 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.14 0.93 8.14 -51.92 -0.42 0.51 16 31 H 0.14 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.18 1.76 7.56 -52.49 -0.40 1.36 16 33 H 0.40 5.20 9.06 45.56 0.41 5.61 16 34 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 35 H 0.11 2.49 6.77 -51.93 -0.35 2.14 16 36 H 0.09 1.94 7.95 -51.93 -0.41 1.53 16 37 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 38 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 40 H 0.16 2.73 5.65 -52.49 -0.30 2.44 16 LS Contribution 353.36 15.07 5.32 5.32 Total: -1.00 -34.98 353.36 -8.11 -43.10 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -3.96 Total: 9.34 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -1.59 Total: -9.26 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.15 Total: -39.46 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -2.45 Total: -51.82 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.77 kcal Atomic # 16 Polarization: 28.58 SS G_CDS: -0.56 Total: 28.02 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.98 -8.11 -43.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142370460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.418 kcal (2) G-P(sol) polarization free energy of solvation -34.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds