Wall clock time and date at job start Sat Apr 11 2020 05:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36449 * 127.12180 * 2 1 4 4 N 1.38883 * 126.46841 * 0.03771 * 3 2 1 5 5 C 1.34775 * 120.00664 * 179.70903 * 4 3 2 6 6 O 1.21564 * 119.99334 * 0.02562 * 5 4 3 7 7 C 1.47836 * 120.00461 * 179.97438 * 5 4 3 8 8 C 1.39939 * 120.02713 * 0.29858 * 7 5 4 9 9 C 1.38325 * 120.35338 * 180.28031 * 8 7 5 10 10 C 1.37751 * 120.41485 * 359.43878 * 9 8 7 11 11 C 1.40751 * 120.04307 * 0.26097 * 10 9 8 12 12 C 1.41446 * 120.17433 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00017 * 150.19572 * 12 11 10 14 14 C 1.39941 * 119.99864 * 330.19782 * 12 11 10 15 15 N 1.30824 * 119.99408 * 161.72099 * 14 12 11 16 16 Si 1.86800 * 119.99963 * 341.71850 * 14 12 11 17 17 H 1.48501 * 109.46785 * 95.41682 * 16 14 12 18 18 H 1.48499 * 109.46666 * 215.41163 * 16 14 12 19 19 H 1.48490 * 109.47239 * 335.41748 * 16 14 12 20 20 C 1.39025 * 120.02528 * 179.97438 * 7 5 4 21 21 N 1.31167 * 107.06899 * 179.77204 * 3 2 1 22 22 N 1.28535 * 109.83674 * 0.22551 * 21 3 2 23 23 C 1.30365 * 110.02331 * 0.02562 * 22 21 3 24 24 C 1.50701 * 126.34482 * 179.97438 * 23 22 21 25 25 F 1.39901 * 109.46958 * 14.97063 * 24 23 22 26 26 F 1.39903 * 109.47394 * 134.97069 * 24 23 22 27 27 F 1.39903 * 109.47067 * 254.97057 * 24 23 22 28 28 H 1.08996 * 109.47101 * 89.99630 * 1 2 3 29 29 H 1.09002 * 109.47194 * 210.00099 * 1 2 3 30 30 H 1.09005 * 109.46871 * 329.99268 * 1 2 3 31 31 H 0.97002 * 120.00026 * 359.70956 * 4 3 2 32 32 H 1.08001 * 119.82178 * 0.02562 * 8 7 5 33 33 H 1.08004 * 119.79031 * 179.72272 * 9 8 7 34 34 H 1.08000 * 119.97439 * 180.27521 * 10 9 8 35 35 H 0.97003 * 119.99324 * 179.97438 * 15 14 12 36 36 H 1.07995 * 120.20179 * 359.97438 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2885 1.0880 0.0000 4 7 1.8961 2.4202 0.0007 5 6 2.8253 3.3965 0.0066 6 8 4.0069 3.1109 0.0107 7 6 2.4076 4.8146 0.0068 8 6 1.0475 5.1441 0.0072 9 6 0.6491 6.4687 0.0016 10 6 1.5859 7.4787 0.0071 11 6 2.9584 7.1668 0.0130 12 6 3.9226 8.2016 0.0181 13 1 4.8824 8.0431 0.4871 14 6 3.6328 9.4309 -0.5846 15 7 4.3423 10.4889 -0.2864 16 14 2.2332 9.5611 -1.8148 17 1 1.0051 10.0242 -1.1201 18 1 2.5970 10.5326 -2.8774 19 1 1.9848 8.2302 -2.4247 20 6 3.3656 5.8220 0.0133 21 7 3.5206 0.6382 0.0050 22 7 3.5158 -0.6471 0.0033 23 6 2.2893 -1.0889 -0.0034 24 6 1.8603 -2.5335 -0.0079 25 9 2.9475 -3.3438 0.3367 26 9 0.8295 -2.7169 0.9200 27 9 1.4058 -2.8810 -1.2846 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5140 31 1 0.9533 2.6482 -0.0029 32 1 0.3049 4.3598 0.0079 33 1 -0.4030 6.7126 -0.0025 34 1 1.2669 8.5105 0.0071 35 1 4.1417 11.3409 -0.7044 36 1 4.4163 5.5725 0.0187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188659667.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:39 Heat of formation + Delta-G solvation = -63.407943 kcal Electronic energy + Delta-G solvation = -28324.792870 eV Core-core repulsion = 23589.326683 eV Total energy + Delta-G solvation = -4735.466186 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.70074 -48.26471 -48.14380 -43.53087 -39.88380 -37.59044 -35.89518 -34.84690 -33.85025 -31.51173 -30.57784 -30.16125 -28.27485 -26.63869 -25.50308 -24.36338 -22.50795 -22.01630 -20.89923 -20.31559 -19.13822 -18.94420 -18.80317 -18.60665 -17.40116 -17.02126 -16.48567 -16.36902 -15.63118 -15.15049 -14.93924 -14.87824 -14.73768 -14.62611 -14.42335 -14.29020 -14.28067 -13.92899 -13.87025 -13.71273 -13.04923 -12.99068 -12.90010 -12.23800 -11.99959 -11.85960 -11.43732 -11.21945 -10.96293 -10.82601 -10.73491 -10.69525 -10.18520 -9.94165 -9.73938 -9.36778 -8.91128 -8.09384 -7.95988 -7.14735 -4.70731 0.91878 1.18263 1.64399 2.00371 2.33621 2.41353 2.73430 2.94370 3.00926 3.07696 3.13986 3.36986 3.45774 3.79278 3.80322 3.95149 4.29417 4.44777 4.47697 4.76329 4.80038 5.12134 5.15025 5.23849 5.57355 5.64426 5.78140 6.19430 6.32615 6.45228 6.48376 6.76136 6.89966 7.10570 7.20924 7.28978 7.58540 7.74097 8.10478 8.13393 8.31044 8.35039 8.54980 9.86764 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.031082 B = 0.002321 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.622188 B =12058.716712 C =12558.395326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.475 5.475 3 C 0.452 3.548 4 N -0.634 5.634 5 C 0.565 3.435 6 O -0.470 6.470 7 C -0.104 4.104 8 C -0.224 4.224 9 C -0.077 4.077 10 C -0.220 4.220 11 C 0.082 3.918 12 C -0.436 4.436 13 H 0.096 0.904 14 C 0.082 3.918 15 N -0.796 5.796 16 Si 0.912 3.088 17 H -0.268 1.268 18 H -0.287 1.287 19 H -0.243 1.243 20 C -0.127 4.127 21 N -0.262 5.262 22 N -0.202 5.202 23 C 0.055 3.945 24 C 0.578 3.422 25 F -0.145 7.145 26 F -0.168 7.168 27 F -0.163 7.163 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.420 0.580 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.289 0.711 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.554 -18.595 -0.574 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.175 5.175 3 C 0.098 3.902 4 N -0.290 5.290 5 C 0.355 3.645 6 O -0.337 6.337 7 C -0.107 4.107 8 C -0.244 4.244 9 C -0.096 4.096 10 C -0.240 4.240 11 C 0.079 3.921 12 C -0.463 4.463 13 H 0.114 0.886 14 C -0.139 4.139 15 N -0.418 5.418 16 Si 0.738 3.262 17 H -0.194 1.194 18 H -0.215 1.215 19 H -0.166 1.166 20 C -0.147 4.147 21 N -0.111 5.111 22 N -0.046 5.046 23 C -0.212 4.212 24 C 0.520 3.480 25 F -0.126 7.126 26 F -0.150 7.150 27 F -0.145 7.145 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.259 0.741 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.065 -18.426 -0.562 21.501 hybrid contribution -2.785 0.224 -0.494 2.838 sum -13.851 -18.202 -1.056 22.896 Atomic orbital electron populations 1.22436 0.74219 1.06517 1.05287 1.45831 1.08978 1.04449 1.58194 1.21429 0.86682 0.83080 0.99043 1.43052 1.12536 0.98935 1.74462 1.19136 0.84847 0.85259 0.75254 1.90895 1.16248 1.82674 1.43930 1.19094 0.94881 0.88575 1.08193 1.20278 0.92784 0.95719 1.15647 1.20486 0.97812 0.92612 0.98650 1.21211 0.93441 0.97860 1.11466 1.17677 0.92203 0.92131 0.90137 1.19582 1.02096 0.94206 1.30444 0.88562 1.26216 0.96812 0.94367 0.96456 1.69684 1.36689 1.00599 1.34861 0.86287 0.80049 0.79989 0.79895 1.19431 1.21463 1.16607 1.21299 0.98056 0.91293 1.04099 1.75277 1.12806 1.00266 1.22729 1.74289 1.15222 1.03903 1.11151 1.23811 0.89650 0.89454 1.18254 1.16257 0.75057 0.82357 0.74284 1.93295 1.54004 1.73528 1.91820 1.93221 1.59686 1.95710 1.66364 1.93283 1.89086 1.92827 1.39261 0.88849 0.87845 0.88272 0.74080 0.88886 0.88025 0.87657 0.90063 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.30 10.90 59.85 0.65 0.95 16 2 N -0.48 -5.15 3.20 -121.41 -0.39 -5.54 16 3 C 0.45 6.62 8.54 -318.50 -2.72 3.90 16 4 N -0.63 -8.73 5.35 -13.28 -0.07 -8.80 16 5 C 0.56 10.32 7.73 -12.33 -0.10 10.22 16 6 O -0.47 -10.32 15.06 5.31 0.08 -10.24 16 7 C -0.10 -2.00 5.87 -105.04 -0.62 -2.61 16 8 C -0.22 -3.75 9.55 -38.91 -0.37 -4.12 16 9 C -0.08 -1.40 10.01 -39.73 -0.40 -1.80 16 10 C -0.22 -4.71 7.17 -38.81 -0.28 -4.99 16 11 C 0.08 1.91 5.10 -106.87 -0.55 1.37 16 12 C -0.44 -11.06 9.57 -37.72 -0.36 -11.42 16 13 H 0.10 2.58 8.06 -52.49 -0.42 2.16 16 14 C 0.08 2.01 5.40 -17.34 -0.09 1.92 16 15 N -0.80 -20.01 13.93 55.55 0.77 -19.23 16 16 Si 0.91 19.13 24.52 -169.99 -4.17 14.96 16 17 H -0.27 -5.37 6.71 56.52 0.38 -4.99 16 18 H -0.29 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.24 -5.19 6.86 56.52 0.39 -4.80 16 20 C -0.13 -2.83 9.34 -38.44 -0.36 -3.19 16 21 N -0.26 -4.79 10.45 30.37 0.32 -4.48 16 22 N -0.20 -3.31 12.02 32.97 0.40 -2.92 16 23 C 0.06 0.69 7.35 -154.12 -1.13 -0.44 16 24 C 0.58 5.65 3.37 36.01 0.12 5.77 16 25 F -0.15 -1.56 17.18 2.25 0.04 -1.52 16 26 F -0.17 -1.37 15.52 2.25 0.03 -1.33 16 27 F -0.16 -1.50 17.30 2.25 0.04 -1.46 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.10 0.41 6.36 -51.93 -0.33 0.08 16 30 H 0.10 0.32 7.66 -51.93 -0.40 -0.08 16 31 H 0.42 4.07 6.17 -40.82 -0.25 3.82 16 32 H 0.09 1.13 6.38 -52.49 -0.33 0.80 16 33 H 0.10 1.52 8.06 -52.48 -0.42 1.10 16 34 H 0.11 2.24 4.72 -52.49 -0.25 1.99 16 35 H 0.29 6.53 8.30 -40.82 -0.34 6.19 16 36 H 0.12 2.73 7.64 -52.49 -0.40 2.33 16 LS Contribution 326.58 15.07 4.92 4.92 Total: -1.00 -30.41 326.58 -6.63 -37.04 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -2.40 Total: 3.04 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -6.20 Total: -4.43 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 1.03 Total: -40.96 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.11 Total: -4.31 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.17 Total: 14.96 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.41 -6.63 -37.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188659667.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.373 kcal (2) G-P(sol) polarization free energy of solvation -30.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds