Wall clock time and date at job start Sat Apr 11 2020 05:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36449 * 127.12180 * 2 1 4 4 N 1.38883 * 126.46841 * 0.03771 * 3 2 1 5 5 C 1.34775 * 120.00664 * 179.70903 * 4 3 2 6 6 O 1.21564 * 119.99334 * 0.02562 * 5 4 3 7 7 C 1.47836 * 120.00461 * 179.97438 * 5 4 3 8 8 C 1.39939 * 120.02713 * 0.29858 * 7 5 4 9 9 C 1.38325 * 120.35338 * 180.28031 * 8 7 5 10 10 C 1.37751 * 120.41485 * 359.43878 * 9 8 7 11 11 C 1.40751 * 120.04307 * 0.26097 * 10 9 8 12 12 C 1.41446 * 120.17433 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00017 * 150.19572 * 12 11 10 14 14 C 1.39941 * 119.99864 * 330.19782 * 12 11 10 15 15 N 1.30824 * 119.99408 * 161.72099 * 14 12 11 16 16 Si 1.86800 * 119.99963 * 341.71850 * 14 12 11 17 17 H 1.48501 * 109.46785 * 95.41682 * 16 14 12 18 18 H 1.48499 * 109.46666 * 215.41163 * 16 14 12 19 19 H 1.48490 * 109.47239 * 335.41748 * 16 14 12 20 20 C 1.39025 * 120.02528 * 179.97438 * 7 5 4 21 21 N 1.31167 * 107.06899 * 179.77204 * 3 2 1 22 22 N 1.28535 * 109.83674 * 0.22551 * 21 3 2 23 23 C 1.30365 * 110.02331 * 0.02562 * 22 21 3 24 24 C 1.50701 * 126.34482 * 179.97438 * 23 22 21 25 25 F 1.39901 * 109.46958 * 14.97063 * 24 23 22 26 26 F 1.39903 * 109.47394 * 134.97069 * 24 23 22 27 27 F 1.39903 * 109.47067 * 254.97057 * 24 23 22 28 28 H 1.08996 * 109.47101 * 89.99630 * 1 2 3 29 29 H 1.09002 * 109.47194 * 210.00099 * 1 2 3 30 30 H 1.09005 * 109.46871 * 329.99268 * 1 2 3 31 31 H 0.97002 * 120.00026 * 359.70956 * 4 3 2 32 32 H 1.08001 * 119.82178 * 0.02562 * 8 7 5 33 33 H 1.08004 * 119.79031 * 179.72272 * 9 8 7 34 34 H 1.08000 * 119.97439 * 180.27521 * 10 9 8 35 35 H 0.97003 * 119.99324 * 179.97438 * 15 14 12 36 36 H 1.07995 * 120.20179 * 359.97438 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2885 1.0880 0.0000 4 7 1.8961 2.4202 0.0007 5 6 2.8253 3.3965 0.0066 6 8 4.0069 3.1109 0.0107 7 6 2.4076 4.8146 0.0068 8 6 1.0475 5.1441 0.0072 9 6 0.6491 6.4687 0.0016 10 6 1.5859 7.4787 0.0071 11 6 2.9584 7.1668 0.0130 12 6 3.9226 8.2016 0.0181 13 1 4.8824 8.0431 0.4871 14 6 3.6328 9.4309 -0.5846 15 7 4.3423 10.4889 -0.2864 16 14 2.2332 9.5611 -1.8148 17 1 1.0051 10.0242 -1.1201 18 1 2.5970 10.5326 -2.8774 19 1 1.9848 8.2302 -2.4247 20 6 3.3656 5.8220 0.0133 21 7 3.5206 0.6382 0.0050 22 7 3.5158 -0.6471 0.0033 23 6 2.2893 -1.0889 -0.0034 24 6 1.8603 -2.5335 -0.0079 25 9 2.9475 -3.3438 0.3367 26 9 0.8295 -2.7169 0.9200 27 9 1.4058 -2.8810 -1.2846 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5140 31 1 0.9533 2.6482 -0.0029 32 1 0.3049 4.3598 0.0079 33 1 -0.4030 6.7126 -0.0025 34 1 1.2669 8.5105 0.0071 35 1 4.1417 11.3409 -0.7044 36 1 4.4163 5.5725 0.0187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188659667.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:38 Heat of formation + Delta-G solvation = -81.338359 kcal Electronic energy + Delta-G solvation = -28325.570391 eV Core-core repulsion = 23589.326683 eV Total energy + Delta-G solvation = -4736.243708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.48093 -49.00681 -48.95180 -44.58574 -41.33112 -39.19407 -36.97926 -36.00140 -35.56646 -32.91747 -32.04077 -31.61117 -28.97501 -27.57732 -27.18017 -25.77516 -23.62848 -23.16243 -22.47585 -21.66265 -20.06617 -19.92224 -19.78186 -19.64164 -18.73885 -17.99151 -17.97279 -17.54151 -17.03854 -16.51327 -16.16102 -15.87352 -15.75379 -15.69537 -15.50834 -15.38092 -15.14672 -15.06937 -14.60800 -14.59099 -14.54700 -14.39605 -13.88623 -13.64847 -13.42860 -13.06669 -12.86756 -12.78607 -12.64112 -12.32711 -11.90022 -11.78289 -11.61050 -11.55817 -11.33481 -11.01980 -10.12171 -9.66646 -9.62436 -8.91967 -6.56916 -0.22156 0.20386 0.23126 0.72690 1.07102 1.21568 1.26727 1.43284 1.50204 1.78625 1.89138 2.11522 2.18058 2.60980 2.65704 2.99964 3.15656 3.40782 3.45758 3.73032 4.00415 4.17760 4.24066 4.33419 4.42001 4.49565 4.56376 4.62467 4.82528 4.89872 5.10582 5.34901 5.37707 5.55939 5.66021 5.83312 5.87117 6.14703 6.29785 6.62545 6.71488 6.77189 7.20830 8.17031 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.031082 B = 0.002321 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.622188 B =12058.716712 C =12558.395326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.456 5.456 3 C 0.442 3.558 4 N -0.608 5.608 5 C 0.571 3.429 6 O -0.516 6.516 7 C -0.106 4.106 8 C -0.177 4.177 9 C -0.077 4.077 10 C -0.220 4.220 11 C 0.066 3.934 12 C -0.488 4.488 13 H 0.048 0.952 14 C 0.042 3.958 15 N -0.849 5.849 16 Si 0.969 3.031 17 H -0.243 1.243 18 H -0.281 1.281 19 H -0.247 1.247 20 C -0.160 4.160 21 N -0.318 5.318 22 N -0.247 5.247 23 C 0.072 3.928 24 C 0.590 3.410 25 F -0.152 7.152 26 F -0.152 7.152 27 F -0.155 7.155 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.442 0.558 32 H 0.159 0.841 33 H 0.155 0.845 34 H 0.108 0.892 35 H 0.295 0.705 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.698 -21.130 -1.211 28.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.153 5.153 3 C 0.086 3.914 4 N -0.266 5.266 5 C 0.360 3.640 6 O -0.388 6.388 7 C -0.109 4.109 8 C -0.196 4.196 9 C -0.095 4.095 10 C -0.240 4.240 11 C 0.064 3.936 12 C -0.517 4.517 13 H 0.067 0.933 14 C -0.172 4.172 15 N -0.475 5.475 16 Si 0.790 3.210 17 H -0.167 1.167 18 H -0.208 1.208 19 H -0.170 1.170 20 C -0.181 4.181 21 N -0.166 5.166 22 N -0.090 5.090 23 C -0.198 4.198 24 C 0.532 3.468 25 F -0.133 7.133 26 F -0.133 7.133 27 F -0.136 7.136 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.146 0.854 31 H 0.286 0.714 32 H 0.177 0.823 33 H 0.172 0.828 34 H 0.126 0.874 35 H 0.106 0.894 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.292 -20.998 -1.184 27.228 hybrid contribution -1.088 0.600 -0.219 1.261 sum -18.380 -20.398 -1.403 27.493 Atomic orbital electron populations 1.23075 0.70378 1.08856 1.07701 1.46037 1.10750 1.02478 1.56061 1.21176 0.86716 0.83737 0.99814 1.42410 1.12727 0.98017 1.73429 1.18905 0.84696 0.85629 0.74731 1.90896 1.18543 1.83320 1.45995 1.19250 0.95724 0.88488 1.07459 1.21038 0.92406 0.97273 1.08927 1.21073 0.99732 0.91965 0.96738 1.21468 0.92798 0.99371 1.10336 1.17734 0.93233 0.91815 0.90847 1.19491 1.01522 0.96559 1.34156 0.93327 1.26975 0.99293 0.93475 0.97470 1.69733 1.39340 1.01320 1.37094 0.85451 0.78035 0.79719 0.77783 1.16749 1.20814 1.16985 1.21192 0.97812 0.92222 1.06833 1.75126 1.15779 1.01447 1.24273 1.74193 1.17566 1.03521 1.13699 1.24326 0.89173 0.90973 1.15313 1.15956 0.75196 0.80828 0.74810 1.93292 1.54603 1.73452 1.91914 1.93259 1.58769 1.95480 1.65824 1.93306 1.88904 1.92560 1.38819 0.86356 0.86246 0.85386 0.71414 0.82320 0.82785 0.87447 0.89420 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.90 127.77 1.39 1.57 16 2 N -0.46 -8.19 3.20 -538.03 -1.72 -9.92 16 3 C 0.44 11.88 8.54 259.98 2.22 14.10 16 4 N -0.61 -14.48 5.35 -314.21 -1.68 -16.16 16 5 C 0.57 20.05 7.73 86.78 0.67 20.72 16 6 O -0.52 -23.43 15.06 -3.92 -0.06 -23.48 16 7 C -0.11 -3.84 5.87 -20.14 -0.12 -3.96 16 8 C -0.18 -4.81 9.55 22.70 0.22 -4.60 16 9 C -0.08 -2.33 10.01 22.18 0.22 -2.11 16 10 C -0.22 -8.92 7.17 22.77 0.16 -8.75 16 11 C 0.07 3.20 5.10 -21.32 -0.11 3.10 16 12 C -0.49 -27.05 9.57 23.47 0.22 -26.82 16 13 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 14 C 0.04 2.20 5.40 85.26 0.46 2.66 16 15 N -0.85 -45.85 13.93 21.83 0.30 -45.55 16 16 Si 0.97 39.43 24.52 68.60 1.68 41.11 16 17 H -0.24 -8.81 6.71 99.48 0.67 -8.14 16 18 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 19 H -0.25 -10.00 6.86 99.48 0.68 -9.32 16 20 C -0.16 -7.41 9.34 23.01 0.21 -7.20 16 21 N -0.32 -11.62 10.45 -57.84 -0.60 -12.22 16 22 N -0.25 -8.02 12.02 -49.60 -0.60 -8.62 16 23 C 0.07 1.63 7.35 137.68 1.01 2.65 16 24 C 0.59 9.88 3.37 71.24 0.24 10.12 16 25 F -0.15 -3.00 17.18 44.97 0.77 -2.23 16 26 F -0.15 -1.88 15.52 44.97 0.70 -1.18 16 27 F -0.15 -2.34 17.30 44.97 0.78 -1.56 16 28 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.12 0.25 6.36 -2.39 -0.02 0.23 16 30 H 0.13 -0.09 7.66 -2.38 -0.02 -0.11 16 31 H 0.44 5.66 6.17 -92.71 -0.57 5.09 16 32 H 0.16 2.30 6.38 -2.91 -0.02 2.29 16 33 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 34 H 0.11 4.30 4.72 -2.91 -0.01 4.29 16 35 H 0.30 14.19 8.30 -92.71 -0.77 13.42 16 36 H 0.09 4.59 7.64 -2.91 -0.02 4.56 16 Total: -1.00 -77.07 326.58 6.94 -70.12 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 0.56 Total: 8.21 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 6.81 Total: 1.47 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -4.30 Total: -92.46 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.06 Total: -23.48 kcal Atomic # 9 Polarization: -7.22 SS G_CDS: 2.25 Total: -4.97 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 1.68 Total: 41.11 kcal Total: -77.07 6.94 -70.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188659667.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.215 kcal (2) G-P(sol) polarization free energy of solvation -77.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds