Wall clock time and date at job start Sat Apr 11 2020 05:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36073 * 117.00030 * 2 1 4 4 C 1.38443 * 120.17039 * 359.72558 * 3 2 1 5 5 C 1.38309 * 120.20430 * 179.78668 * 4 3 2 6 6 C 1.38583 * 120.60880 * 0.46978 * 5 4 3 7 7 C 1.39549 * 119.19594 * 359.76446 * 6 5 4 8 8 C 1.38401 * 120.29641 * 0.02562 * 7 6 5 9 9 N 1.39954 * 119.98203 * 179.97438 * 8 7 6 10 10 S 1.65594 * 120.00262 * 327.07555 * 9 8 7 11 11 O 1.42107 * 106.40388 * 181.29191 * 10 9 8 12 12 O 1.42097 * 106.40213 * 314.21282 * 10 9 8 13 13 C 1.76198 * 107.21999 * 67.75158 * 10 9 8 14 14 H 1.08005 * 119.99864 * 359.97438 * 13 10 9 15 15 C 1.37878 * 120.00122 * 180.02562 * 13 10 9 16 16 N 1.31514 * 120.00031 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 120.00063 * 359.97438 * 15 13 10 18 18 H 1.48495 * 109.47269 * 90.00112 * 17 15 13 19 19 H 1.48501 * 109.47310 * 210.00571 * 17 15 13 20 20 H 1.48500 * 109.46951 * 330.00251 * 17 15 13 21 21 N 1.40043 * 111.58161 * 179.78323 * 6 5 4 22 22 C 1.34775 * 124.98897 * 179.97438 * 21 6 5 23 23 C 1.50704 * 120.00011 * 180.02562 * 22 21 6 24 24 O 1.21292 * 120.00023 * 0.02562 * 22 21 6 25 25 C 1.46531 * 110.02076 * 0.02562 * 21 6 5 26 26 C 1.51243 * 130.83550 * 180.19674 * 5 4 3 27 27 H 1.08997 * 109.47085 * 300.00025 * 1 2 3 28 28 H 1.09000 * 109.46931 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47050 * 59.99768 * 1 2 3 30 30 H 1.08004 * 119.89957 * 0.02562 * 4 3 2 31 31 H 1.07998 * 119.84816 * 179.97438 * 7 6 5 32 32 H 0.97006 * 119.99711 * 147.07011 * 9 8 7 33 33 H 0.96997 * 120.00123 * 180.02562 * 16 15 13 34 34 H 1.08998 * 109.46807 * 359.97438 * 23 22 21 35 35 H 1.08994 * 109.46909 * 119.99882 * 23 22 21 36 36 H 1.09001 * 109.46853 * 240.00473 * 23 22 21 37 37 H 1.08994 * 110.28997 * 118.93231 * 25 21 6 38 38 H 1.08994 * 110.29239 * 241.06511 * 25 21 6 39 39 H 1.09000 * 110.40083 * 61.45850 * 26 5 4 40 40 H 1.08999 * 110.50679 * 299.08751 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2124 0.0000 4 6 1.2963 2.3757 -0.0057 5 6 1.9234 3.6085 -0.0013 6 6 3.3064 3.6965 -0.0009 7 6 4.0632 2.5240 0.0000 8 6 3.4378 1.2894 0.0000 9 7 4.2032 0.1177 0.0003 10 16 5.6641 0.0827 -0.7786 11 8 6.1706 -1.2359 -0.6226 12 8 5.4576 0.6910 -2.0461 13 6 6.7548 1.1431 0.1104 14 1 6.4046 1.6635 0.9896 15 6 8.0552 1.3092 -0.3168 16 7 8.8694 2.1003 0.3471 17 14 8.6608 0.4096 -1.8378 18 1 8.4214 1.2502 -3.0382 19 1 10.1146 0.1374 -1.7059 20 1 7.9276 -0.8741 -1.9783 21 7 3.7378 5.0289 -0.0010 22 6 5.0263 5.4241 -0.0002 23 6 5.3640 6.8928 0.0002 24 8 5.9141 4.5977 0.0003 25 6 2.5824 5.9302 -0.0009 26 6 1.3520 5.0088 -0.0018 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 0.2176 2.3205 -0.0098 31 1 5.1417 2.5804 0.0000 32 1 3.8779 -0.6739 0.4570 33 1 9.7841 2.2175 0.0463 34 1 4.4439 7.4771 -0.0008 35 1 5.9456 7.1316 0.8905 36 1 5.9466 7.1318 -0.8895 37 1 2.5887 6.5527 0.8937 38 1 2.5885 6.5526 -0.8957 39 1 0.7526 5.1749 0.8933 40 1 0.7521 5.1761 -0.8963 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192980163.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:41 Heat of formation + Delta-G solvation = -100.882237 kcal Electronic energy + Delta-G solvation = -28714.600726 eV Core-core repulsion = 24622.517473 eV Total energy + Delta-G solvation = -4092.083253 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -40.96030 -39.37665 -37.69345 -36.34492 -35.51276 -34.42386 -33.73544 -32.92849 -31.48660 -30.45937 -28.43723 -28.08032 -26.78312 -26.27751 -23.23594 -22.69735 -21.26654 -19.61497 -18.88477 -17.74026 -17.44305 -17.24991 -16.74677 -16.33030 -16.19470 -15.71936 -15.49763 -14.93694 -14.61698 -14.40539 -14.17508 -13.56635 -13.42825 -13.30117 -13.17083 -12.94828 -12.71210 -12.59061 -12.55297 -12.36765 -12.06020 -11.85012 -11.71148 -11.48908 -11.29307 -11.10585 -10.87406 -10.73548 -10.59986 -10.47501 -10.38727 -9.78715 -9.43933 -9.27514 -9.05834 -8.87844 -7.93498 -7.06273 -6.65327 -5.19779 1.56124 1.64981 2.01371 2.93960 2.97291 3.14186 3.26980 3.34588 3.45665 4.01623 4.05134 4.21045 4.42507 4.51228 4.72735 4.81807 4.94508 5.08402 5.10749 5.19281 5.19870 5.28800 5.33999 5.39332 5.48646 5.48760 5.61281 5.68638 5.74955 5.81180 5.93457 6.13319 6.26506 6.33550 6.49685 6.67924 6.72887 7.28438 7.52986 7.60773 7.63489 7.82487 8.33114 8.40164 8.83280 10.46041 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010148 B = 0.006493 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.475100 B = 4311.267420 C = 6702.613612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.314 6.314 3 C 0.069 3.931 4 C -0.145 4.145 5 C -0.140 4.140 6 C 0.149 3.851 7 C -0.154 4.154 8 C 0.194 3.806 9 N -1.050 6.050 10 S 2.661 3.339 11 O -1.001 7.001 12 O -0.996 6.996 13 C -1.009 5.009 14 H 0.130 0.870 15 C 0.161 3.839 16 N -0.807 5.807 17 Si 0.796 3.204 18 H -0.247 1.247 19 H -0.255 1.255 20 H -0.222 1.222 21 N -0.559 5.559 22 C 0.498 3.502 23 C -0.164 4.164 24 O -0.473 6.473 25 C 0.104 3.896 26 C -0.078 4.078 27 H 0.052 0.948 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.130 0.870 31 H 0.193 0.807 32 H 0.419 0.581 33 H 0.279 0.721 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.704 9.358 1.348 20.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.020 3.980 4 C -0.165 4.165 5 C -0.144 4.144 6 C 0.054 3.946 7 C -0.177 4.177 8 C 0.095 3.905 9 N -0.793 5.793 10 S 2.764 3.236 11 O -0.992 6.992 12 O -0.986 6.986 13 C -1.143 5.143 14 H 0.148 0.852 15 C -0.060 4.060 16 N -0.435 5.435 17 Si 0.616 3.384 18 H -0.170 1.170 19 H -0.179 1.179 20 H -0.144 1.144 21 N -0.285 5.285 22 C 0.287 3.713 23 C -0.224 4.224 24 O -0.343 6.343 25 C -0.018 4.018 26 C -0.115 4.115 27 H 0.070 0.930 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.148 0.852 31 H 0.209 0.791 32 H 0.253 0.747 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.515 8.484 0.512 18.574 hybrid contribution 0.074 0.020 0.122 0.144 sum -16.442 8.505 0.633 18.522 Atomic orbital electron populations 1.22980 0.79127 1.03494 1.00975 1.86077 1.20640 1.26268 1.89772 1.18488 0.90522 0.84518 1.04442 1.20018 0.99142 0.89841 1.07503 1.19572 0.92417 0.94220 1.08231 1.17860 0.92007 0.84542 1.00193 1.21633 1.04908 0.87885 1.03247 1.16343 0.86988 0.86343 1.00829 1.53542 1.38424 1.17362 1.69993 1.01996 0.72254 0.75088 0.74309 1.93486 1.77518 1.40942 1.87214 1.93443 1.84858 1.78477 1.41837 1.30298 1.09831 1.45393 1.28822 0.85244 1.24300 0.94999 0.91637 0.95032 1.69996 1.06306 1.30387 1.36808 0.87959 0.82505 0.83551 0.84377 1.17034 1.17875 1.14447 1.45981 1.06491 1.04703 1.71375 1.20947 0.80806 0.92425 0.77127 1.21858 1.03450 0.91448 1.05623 1.91030 1.44932 1.54116 1.44243 1.22065 0.84206 0.93029 1.02506 1.20980 0.96763 0.90400 1.03332 0.92983 0.88619 0.92924 0.85183 0.79071 0.74689 0.91105 0.90734 0.88497 0.88520 0.90133 0.90134 0.89520 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.82 101.05 0.99 1.29 16 2 O -0.31 -4.89 10.03 -19.97 -0.20 -5.09 16 3 C 0.07 1.21 6.70 -39.11 -0.26 0.95 16 4 C -0.15 -2.08 9.03 -39.48 -0.36 -2.44 16 5 C -0.14 -2.05 6.23 -104.20 -0.65 -2.70 16 6 C 0.15 2.79 6.63 -83.49 -0.55 2.24 16 7 C -0.15 -3.49 8.35 -39.03 -0.33 -3.81 16 8 C 0.19 4.15 6.20 -83.69 -0.52 3.63 16 9 N -1.05 -23.47 5.67 32.45 0.18 -23.29 16 10 S 2.66 72.32 3.85 -107.50 -0.41 71.91 16 11 O -1.00 -28.43 16.02 -57.17 -0.92 -29.35 16 12 O -1.00 -28.88 16.25 -57.17 -0.93 -29.81 16 13 C -1.01 -29.74 8.12 30.60 0.25 -29.49 16 14 H 0.13 3.90 7.14 -52.48 -0.37 3.53 16 15 C 0.16 4.85 5.47 -17.82 -0.10 4.75 16 16 N -0.81 -24.24 13.96 55.43 0.77 -23.46 16 17 Si 0.80 21.55 26.54 -169.99 -4.51 17.03 16 18 H -0.25 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.25 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.22 -6.11 5.61 56.52 0.32 -5.80 16 21 N -0.56 -8.85 3.13 -112.87 -0.35 -9.20 16 22 C 0.50 8.74 7.90 -10.98 -0.09 8.65 16 23 C -0.16 -1.83 10.20 36.01 0.37 -1.46 16 24 O -0.47 -11.42 15.26 5.55 0.08 -11.33 16 25 C 0.10 1.01 5.98 -3.65 -0.02 0.98 16 26 C -0.08 -0.73 6.93 -27.24 -0.19 -0.92 16 27 H 0.05 0.43 7.68 -51.93 -0.40 0.03 16 28 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 30 H 0.13 1.36 6.30 -52.48 -0.33 1.03 16 31 H 0.19 5.07 2.66 -52.49 -0.14 4.93 16 32 H 0.42 8.08 8.65 -34.47 -0.30 7.79 16 33 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.07 0.55 6.55 -51.93 -0.34 0.21 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 0.57 8.05 -51.93 -0.42 0.16 16 38 H 0.08 0.60 8.05 -51.93 -0.42 0.18 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 339.84 15.07 5.12 5.12 Total: -1.00 -39.45 339.84 -7.06 -46.51 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -4.45 Total: 9.30 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -1.45 Total: -18.33 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.60 Total: -55.95 kcal Atomic # 8 Polarization: -73.63 SS G_CDS: -1.96 Total: -75.59 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.51 Total: 17.03 kcal Atomic # 16 Polarization: 72.32 SS G_CDS: -0.41 Total: 71.91 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -39.45 -7.06 -46.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980163.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.373 kcal (2) G-P(sol) polarization free energy of solvation -39.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds