Wall clock time and date at job start Sat Apr 11 2020 05:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36073 * 117.00030 * 2 1 4 4 C 1.38443 * 120.17039 * 359.72558 * 3 2 1 5 5 C 1.38309 * 120.20430 * 179.78668 * 4 3 2 6 6 C 1.38583 * 120.60880 * 0.46978 * 5 4 3 7 7 C 1.39549 * 119.19594 * 359.76446 * 6 5 4 8 8 C 1.38401 * 120.29641 * 0.02562 * 7 6 5 9 9 N 1.39954 * 119.98203 * 179.97438 * 8 7 6 10 10 S 1.65594 * 120.00262 * 327.07555 * 9 8 7 11 11 O 1.42107 * 106.40388 * 181.29191 * 10 9 8 12 12 O 1.42097 * 106.40213 * 314.21282 * 10 9 8 13 13 C 1.76198 * 107.21999 * 67.75158 * 10 9 8 14 14 H 1.08005 * 119.99864 * 359.97438 * 13 10 9 15 15 C 1.37878 * 120.00122 * 180.02562 * 13 10 9 16 16 N 1.31514 * 120.00031 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 120.00063 * 359.97438 * 15 13 10 18 18 H 1.48495 * 109.47269 * 90.00112 * 17 15 13 19 19 H 1.48501 * 109.47310 * 210.00571 * 17 15 13 20 20 H 1.48500 * 109.46951 * 330.00251 * 17 15 13 21 21 N 1.40043 * 111.58161 * 179.78323 * 6 5 4 22 22 C 1.34775 * 124.98897 * 179.97438 * 21 6 5 23 23 C 1.50704 * 120.00011 * 180.02562 * 22 21 6 24 24 O 1.21292 * 120.00023 * 0.02562 * 22 21 6 25 25 C 1.46531 * 110.02076 * 0.02562 * 21 6 5 26 26 C 1.51243 * 130.83550 * 180.19674 * 5 4 3 27 27 H 1.08997 * 109.47085 * 300.00025 * 1 2 3 28 28 H 1.09000 * 109.46931 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47050 * 59.99768 * 1 2 3 30 30 H 1.08004 * 119.89957 * 0.02562 * 4 3 2 31 31 H 1.07998 * 119.84816 * 179.97438 * 7 6 5 32 32 H 0.97006 * 119.99711 * 147.07011 * 9 8 7 33 33 H 0.96997 * 120.00123 * 180.02562 * 16 15 13 34 34 H 1.08998 * 109.46807 * 359.97438 * 23 22 21 35 35 H 1.08994 * 109.46909 * 119.99882 * 23 22 21 36 36 H 1.09001 * 109.46853 * 240.00473 * 23 22 21 37 37 H 1.08994 * 110.28997 * 118.93231 * 25 21 6 38 38 H 1.08994 * 110.29239 * 241.06511 * 25 21 6 39 39 H 1.09000 * 110.40083 * 61.45850 * 26 5 4 40 40 H 1.08999 * 110.50679 * 299.08751 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2124 0.0000 4 6 1.2963 2.3757 -0.0057 5 6 1.9234 3.6085 -0.0013 6 6 3.3064 3.6965 -0.0009 7 6 4.0632 2.5240 0.0000 8 6 3.4378 1.2894 0.0000 9 7 4.2032 0.1177 0.0003 10 16 5.6641 0.0827 -0.7786 11 8 6.1706 -1.2359 -0.6226 12 8 5.4576 0.6910 -2.0461 13 6 6.7548 1.1431 0.1104 14 1 6.4046 1.6635 0.9896 15 6 8.0552 1.3092 -0.3168 16 7 8.8694 2.1003 0.3471 17 14 8.6608 0.4096 -1.8378 18 1 8.4214 1.2502 -3.0382 19 1 10.1146 0.1374 -1.7059 20 1 7.9276 -0.8741 -1.9783 21 7 3.7378 5.0289 -0.0010 22 6 5.0263 5.4241 -0.0002 23 6 5.3640 6.8928 0.0002 24 8 5.9141 4.5977 0.0003 25 6 2.5824 5.9302 -0.0009 26 6 1.3520 5.0088 -0.0018 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 0.2176 2.3205 -0.0098 31 1 5.1417 2.5804 0.0000 32 1 3.8779 -0.6739 0.4570 33 1 9.7841 2.2175 0.0463 34 1 4.4439 7.4771 -0.0008 35 1 5.9456 7.1316 0.8905 36 1 5.9466 7.1318 -0.8895 37 1 2.5887 6.5527 0.8937 38 1 2.5885 6.5526 -0.8957 39 1 0.7526 5.1749 0.8933 40 1 0.7521 5.1761 -0.8963 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192980163.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:40 Heat of formation + Delta-G solvation = -135.097821 kcal Electronic energy + Delta-G solvation = -28716.084425 eV Core-core repulsion = 24622.517473 eV Total energy + Delta-G solvation = -4093.566952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.16496 -40.61615 -38.96708 -38.02275 -37.45480 -36.68399 -35.27432 -35.08286 -32.66229 -31.58821 -29.53969 -29.28669 -28.57504 -27.69120 -24.28968 -23.98902 -22.47480 -21.20491 -20.62348 -19.74268 -18.92365 -18.66264 -18.48822 -17.73710 -17.29675 -17.21539 -16.78146 -16.54033 -16.27185 -15.82217 -15.55925 -15.41099 -15.20429 -14.76459 -14.60950 -14.39110 -14.09186 -13.91449 -13.59068 -13.47170 -13.34641 -13.22094 -13.00604 -12.89947 -12.86165 -12.72161 -12.69294 -12.46756 -12.21982 -12.11055 -12.07122 -11.71231 -11.33396 -11.15497 -10.83378 -10.34472 -9.44151 -8.94336 -8.33285 -7.49972 -0.12990 0.27885 0.29132 0.96455 1.08126 1.13379 1.66763 1.84393 1.87408 2.23218 2.42293 2.45767 2.69981 3.15567 3.37172 3.64682 3.84070 3.88171 4.02204 4.11461 4.31868 4.34104 4.34715 4.46390 4.52627 4.61477 4.65840 4.70910 4.80694 4.86321 4.94497 5.00712 5.06496 5.15343 5.20258 5.32374 5.36951 5.44871 5.85848 5.99085 6.08806 6.46429 6.51939 6.52920 7.14924 8.23355 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010148 B = 0.006493 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.475100 B = 4311.267420 C = 6702.613612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.335 6.335 3 C 0.077 3.923 4 C -0.134 4.134 5 C -0.115 4.115 6 C 0.113 3.887 7 C -0.198 4.198 8 C 0.144 3.856 9 N -1.041 6.041 10 S 2.688 3.312 11 O -1.019 7.019 12 O -1.020 7.020 13 C -1.021 5.021 14 H 0.103 0.897 15 C 0.115 3.885 16 N -0.838 5.838 17 Si 0.821 3.179 18 H -0.245 1.245 19 H -0.209 1.209 20 H -0.230 1.230 21 N -0.560 5.560 22 C 0.482 3.518 23 C -0.151 4.151 24 O -0.561 6.561 25 C 0.091 3.909 26 C -0.071 4.071 27 H 0.075 0.925 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.183 0.817 31 H 0.146 0.854 32 H 0.429 0.571 33 H 0.289 0.711 34 H 0.122 0.878 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.123 0.877 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.164 11.483 0.957 24.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.249 6.249 3 C 0.027 3.973 4 C -0.153 4.153 5 C -0.119 4.119 6 C 0.017 3.983 7 C -0.222 4.222 8 C 0.047 3.953 9 N -0.790 5.790 10 S 2.789 3.211 11 O -1.009 7.009 12 O -1.010 7.010 13 C -1.154 5.154 14 H 0.121 0.879 15 C -0.103 4.103 16 N -0.467 5.467 17 Si 0.638 3.362 18 H -0.169 1.169 19 H -0.131 1.131 20 H -0.153 1.153 21 N -0.285 5.285 22 C 0.274 3.726 23 C -0.210 4.210 24 O -0.438 6.438 25 C -0.029 4.029 26 C -0.107 4.107 27 H 0.093 0.907 28 H 0.134 0.866 29 H 0.088 0.912 30 H 0.200 0.800 31 H 0.164 0.836 32 H 0.266 0.734 33 H 0.100 0.900 34 H 0.141 0.859 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.141 0.859 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.022 10.655 0.139 23.568 hybrid contribution 1.173 -0.567 0.324 1.343 sum -19.849 10.089 0.463 22.270 Atomic orbital electron populations 1.23432 0.75913 1.05689 1.02852 1.86060 1.23914 1.25542 1.89423 1.18531 0.89139 0.86496 1.03107 1.20563 1.01350 0.88357 1.05036 1.20293 0.90705 0.97185 1.03699 1.18253 0.93823 0.84884 1.01361 1.21487 1.03522 0.90669 1.06498 1.16607 0.88894 0.85079 1.04746 1.52872 1.37138 1.18755 1.70268 1.00936 0.72620 0.73850 0.73683 1.93444 1.78887 1.41048 1.87504 1.93392 1.85584 1.78848 1.43163 1.30631 1.10712 1.45838 1.28267 0.87912 1.25063 0.95390 0.92458 0.97393 1.70029 1.07131 1.31324 1.38245 0.87571 0.84824 0.82168 0.81648 1.16893 1.13067 1.15298 1.46313 1.07663 1.04729 1.69801 1.22198 0.80701 0.94366 0.75322 1.21894 1.05935 0.87175 1.05983 1.91004 1.47631 1.56767 1.48408 1.22664 0.81722 0.92762 1.05737 1.21253 0.96967 0.85871 1.06652 0.90685 0.86601 0.91184 0.80007 0.83645 0.73413 0.90033 0.85901 0.87987 0.88148 0.86782 0.87104 0.85865 0.86164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.82 113.37 1.11 1.35 16 2 O -0.34 -9.87 10.03 -94.38 -0.95 -10.82 16 3 C 0.08 2.61 6.70 22.58 0.15 2.76 16 4 C -0.13 -3.33 9.03 22.34 0.20 -3.13 16 5 C -0.11 -2.98 6.23 -19.59 -0.12 -3.10 16 6 C 0.11 4.25 6.63 38.23 0.25 4.50 16 7 C -0.20 -9.65 8.35 22.63 0.19 -9.46 16 8 C 0.14 6.46 6.20 38.14 0.24 6.70 16 9 N -1.04 -49.51 5.67 -51.26 -0.29 -49.80 16 10 S 2.69 154.93 3.85 -56.49 -0.22 154.72 16 11 O -1.02 -60.31 16.02 -128.00 -2.05 -62.36 16 12 O -1.02 -62.52 16.25 -128.00 -2.08 -64.60 16 13 C -1.02 -65.14 8.12 67.73 0.55 -64.59 16 14 H 0.10 6.93 7.14 -2.91 -0.02 6.91 16 15 C 0.11 7.31 5.47 84.65 0.46 7.78 16 16 N -0.84 -53.31 13.96 21.45 0.30 -53.01 16 17 Si 0.82 45.13 26.54 68.60 1.82 46.95 16 18 H -0.25 -13.29 7.11 99.48 0.71 -12.59 16 19 H -0.21 -9.90 7.11 99.48 0.71 -9.19 16 20 H -0.23 -12.92 5.61 99.48 0.56 -12.36 16 21 N -0.56 -17.27 3.13 -629.39 -1.97 -19.24 16 22 C 0.48 17.56 7.90 87.66 0.69 18.25 16 23 C -0.15 -3.17 10.20 71.24 0.73 -2.44 16 24 O -0.56 -29.82 15.26 -3.07 -0.05 -29.86 16 25 C 0.09 1.30 5.98 86.62 0.52 1.82 16 26 C -0.07 -0.89 6.93 30.26 0.21 -0.68 16 27 H 0.07 0.87 7.68 -2.39 -0.02 0.85 16 28 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 30 H 0.18 2.59 6.30 -2.91 -0.02 2.57 16 31 H 0.15 8.56 2.66 -2.91 -0.01 8.55 16 32 H 0.43 17.58 8.65 -96.74 -0.84 16.74 16 33 H 0.29 16.52 8.31 -92.71 -0.77 15.75 16 34 H 0.12 1.30 6.55 -2.39 -0.02 1.28 16 35 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.11 0.92 8.05 -2.39 -0.02 0.90 16 38 H 0.11 0.97 8.05 -2.39 -0.02 0.95 16 39 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -99.78 339.84 -0.17 -99.95 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.13 Total: 28.32 kcal Atomic # 6 Polarization: -45.43 SS G_CDS: 5.18 Total: -40.25 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -1.96 Total: -122.05 kcal Atomic # 8 Polarization: -162.52 SS G_CDS: -5.12 Total: -167.64 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.82 Total: 46.95 kcal Atomic # 16 Polarization: 154.93 SS G_CDS: -0.22 Total: 154.72 kcal Total: -99.78 -0.17 -99.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980163.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.144 kcal (2) G-P(sol) polarization free energy of solvation -99.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds