Wall clock time and date at job start Sat Apr 11 2020 05:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46751 * 2 1 4 4 S 1.81399 * 109.47141 * 119.99980 * 2 1 3 5 5 O 1.42094 * 110.54437 * 308.37517 * 4 2 1 6 6 O 1.42101 * 110.54118 * 171.62550 * 4 2 1 7 7 N 1.65602 * 104.44897 * 60.00368 * 4 2 1 8 8 C 1.46926 * 120.63116 * 89.99836 * 7 4 2 9 9 C 1.53191 * 108.89109 * 126.46643 * 8 7 4 10 10 C 1.53044 * 109.31440 * 54.56430 * 9 8 7 11 11 N 1.46498 * 109.46002 * 178.62636 * 10 9 8 12 12 S 1.65596 * 120.00160 * 214.99846 * 11 10 9 13 13 O 1.42096 * 106.40411 * 178.54078 * 12 11 10 14 14 O 1.42105 * 106.39967 * 311.46229 * 12 11 10 15 15 C 1.76205 * 107.21752 * 64.99831 * 12 11 10 16 16 H 1.08000 * 119.99685 * 0.02562 * 15 12 11 17 17 C 1.37877 * 120.00108 * 180.02562 * 15 12 11 18 18 N 1.31520 * 119.99925 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 120.00248 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47121 * 59.99709 * 19 17 15 21 21 H 1.48498 * 109.47182 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47009 * 300.00058 * 19 17 15 23 23 C 1.53040 * 109.53662 * 298.63203 * 10 9 8 24 24 C 1.46957 * 120.65077 * 269.81777 * 7 4 2 25 25 H 1.08996 * 109.47417 * 60.00043 * 1 2 3 26 26 H 1.09002 * 109.47283 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47392 * 299.99498 * 1 2 3 28 28 H 1.08996 * 109.46946 * 240.00271 * 2 1 3 29 29 H 1.09009 * 109.46881 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47467 * 299.99713 * 3 2 1 31 31 H 1.09004 * 109.47140 * 60.00740 * 3 2 1 32 32 H 1.09002 * 109.58861 * 6.60646 * 8 7 4 33 33 H 1.08996 * 109.58519 * 246.32537 * 8 7 4 34 34 H 1.09003 * 109.49294 * 174.51508 * 9 8 7 35 35 H 1.08997 * 109.50161 * 294.61021 * 9 8 7 36 36 H 1.08994 * 109.45986 * 58.65006 * 10 9 8 37 37 H 0.97001 * 119.99787 * 35.00127 * 11 10 9 38 38 H 0.96993 * 120.00035 * 180.02562 * 18 17 15 39 39 H 1.08995 * 109.49643 * 181.31582 * 23 10 9 40 40 H 1.08996 * 109.49892 * 301.41776 * 23 10 9 41 41 H 1.09001 * 109.46843 * 113.75072 * 24 7 4 42 42 H 1.08997 * 109.71602 * 353.46565 * 24 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 2.1346 -0.8551 1.4811 5 8 1.5221 -0.3245 2.6483 6 8 3.5420 -1.0386 1.4113 7 7 1.5165 -2.3863 1.3555 8 6 2.2693 -3.4434 0.6666 9 6 2.4018 -4.6486 1.6029 10 6 1.0111 -5.0755 2.0783 11 7 1.1313 -6.2483 2.9479 12 16 -0.0395 -7.4192 2.9256 13 8 0.3794 -8.4231 3.8398 14 8 -1.2850 -6.7432 3.0305 15 6 -0.0077 -8.1581 1.3262 16 1 0.6999 -7.8139 0.5864 17 6 -0.8860 -9.1755 1.0193 18 7 -1.7480 -9.5942 1.9201 19 14 -0.8519 -9.9593 -0.6759 20 1 0.4864 -10.5553 -0.9189 21 1 -1.8880 -11.0204 -0.7517 22 1 -1.1273 -8.9249 -1.7052 23 6 0.3619 -3.9286 2.8563 24 6 0.2063 -2.7151 1.9343 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8901 32 1 3.2607 -3.0740 0.4039 33 1 1.7384 -3.7399 -0.2379 34 1 2.8730 -5.4739 1.0690 35 1 3.0125 -4.3755 2.4634 36 1 0.3931 -5.3247 1.2158 37 1 1.8967 -6.3389 3.5369 38 1 -2.3657 -10.3102 1.7043 39 1 -0.6189 -4.2414 3.2146 40 1 0.9918 -3.6622 3.7050 41 1 -0.4952 -2.9517 1.1343 42 1 -0.1660 -1.8661 2.5074 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:59 Heat of formation + Delta-G solvation = -173.949268 kcal Electronic energy + Delta-G solvation = -27017.175964 eV Core-core repulsion = 23057.368238 eV Total energy + Delta-G solvation = -3959.807726 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -38.68948 -37.36125 -36.09520 -35.37253 -35.20153 -34.41061 -33.93399 -33.08945 -31.04421 -29.75477 -27.72066 -26.15118 -23.80215 -23.35513 -22.70220 -20.52065 -19.13092 -18.71296 -17.95565 -17.36892 -16.95372 -16.24234 -16.11201 -15.47865 -15.11676 -14.91846 -14.54202 -14.30756 -14.11462 -13.78451 -13.62297 -13.54527 -13.45912 -13.22845 -12.77695 -12.56220 -12.53434 -12.24263 -12.03480 -11.97663 -11.82780 -11.77442 -11.44601 -11.24192 -11.21599 -11.11144 -10.92937 -10.80000 -10.64725 -10.58290 -10.28410 -10.18168 -9.98434 -9.25784 -9.07498 -9.01503 -8.52427 -6.71635 -5.33891 0.04034 2.34310 2.45352 3.05810 3.11123 3.16021 3.65214 3.84298 4.03804 4.12159 4.36417 4.52880 4.62843 4.68125 4.75512 4.96895 5.05650 5.08999 5.13608 5.19600 5.22958 5.37688 5.41330 5.43569 5.54228 5.58436 5.68653 5.69938 5.78296 5.82935 5.96781 6.06517 6.23696 6.27996 6.41278 6.55934 6.67787 6.91293 7.30572 7.90030 7.96895 8.87085 10.22548 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.020387 B = 0.003242 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.113978 B = 8634.712090 C = 9090.306104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.597 4.597 3 C -0.143 4.143 4 S 2.608 3.392 5 O -0.951 6.951 6 O -0.957 6.957 7 N -0.998 5.998 8 C 0.119 3.881 9 C -0.137 4.137 10 C 0.163 3.837 11 N -1.133 6.133 12 S 2.715 3.285 13 O -1.009 7.009 14 O -1.005 7.005 15 C -1.022 5.022 16 H 0.101 0.899 17 C 0.133 3.867 18 N -0.845 5.845 19 Si 0.920 3.080 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.265 1.265 23 C -0.151 4.151 24 C 0.119 3.881 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.135 0.865 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.402 0.598 38 H 0.291 0.709 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.122 18.630 -7.363 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.706 4.706 3 C -0.202 4.202 4 S 2.701 3.299 5 O -0.942 6.942 6 O -0.947 6.947 7 N -0.836 5.836 8 C -0.007 4.007 9 C -0.178 4.178 10 C 0.055 3.945 11 N -0.885 5.885 12 S 2.814 3.186 13 O -0.999 6.999 14 O -0.995 6.995 15 C -1.155 5.155 16 H 0.119 0.881 17 C -0.085 4.085 18 N -0.475 5.475 19 Si 0.744 3.256 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.189 1.189 23 C -0.192 4.192 24 C -0.007 4.007 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.153 0.847 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.232 0.768 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.767 18.649 -5.985 20.417 hybrid contribution 0.260 -0.619 -1.941 2.054 sum 6.027 18.030 -7.926 20.597 Atomic orbital electron populations 1.21642 0.89763 1.04072 1.04399 1.30436 1.07548 1.09655 1.22970 1.21627 1.01735 0.92188 1.04622 1.05244 0.74304 0.73697 0.76631 1.93574 1.78067 1.78941 1.43571 1.93574 1.29224 1.84499 1.87445 1.57689 1.30367 1.25337 1.70245 1.21491 0.96345 0.87773 0.95074 1.22195 0.97845 0.97514 1.00239 1.20473 0.95977 0.85330 0.92761 1.56099 1.42323 1.36033 1.54091 1.00424 0.71103 0.71100 0.75942 1.93373 1.82379 1.57784 1.66373 1.93354 1.42233 1.75307 1.88599 1.30547 1.29447 1.32476 1.23069 0.88051 1.24735 0.91311 0.93405 0.99030 1.69890 1.17054 1.25667 1.34841 0.86218 0.78855 0.78913 0.81653 1.18890 1.20159 1.18913 1.22462 1.03493 0.94547 0.98677 1.21569 0.82731 0.99259 0.97096 0.90631 0.90638 0.90743 0.84734 0.91125 0.90082 0.91004 0.88848 0.90815 0.89692 0.90984 0.89115 0.76790 0.89840 0.88681 0.91268 0.90748 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.95 37.16 0.33 -0.60 16 2 C -0.60 -4.29 3.58 -26.73 -0.10 -4.39 16 3 C -0.14 -0.92 9.20 37.16 0.34 -0.58 16 4 S 2.61 28.23 4.89 -107.50 -0.53 27.70 16 5 O -0.95 -12.90 16.48 -57.54 -0.95 -13.85 16 6 O -0.96 -12.88 16.59 -57.54 -0.95 -13.83 16 7 N -1.00 -10.79 2.99 -113.50 -0.34 -11.13 16 8 C 0.12 1.23 6.43 -3.71 -0.02 1.21 16 9 C -0.14 -1.73 5.61 -26.61 -0.15 -1.88 16 10 C 0.16 2.59 2.62 -67.89 -0.18 2.41 16 11 N -1.13 -21.38 5.47 -4.86 -0.03 -21.41 16 12 S 2.71 69.46 4.93 -107.50 -0.53 68.93 16 13 O -1.01 -29.21 18.02 -57.17 -1.03 -30.24 16 14 O -1.01 -27.91 17.26 -57.17 -0.99 -28.90 16 15 C -1.02 -27.06 9.57 30.60 0.29 -26.76 16 16 H 0.10 2.41 7.81 -52.49 -0.41 2.00 16 17 C 0.13 3.62 5.46 -17.82 -0.10 3.53 16 18 N -0.84 -24.42 13.19 55.43 0.73 -23.69 16 19 Si 0.92 19.97 29.54 -169.99 -5.02 14.95 16 20 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 23 C -0.15 -2.23 5.69 -26.61 -0.15 -2.38 16 24 C 0.12 1.37 5.33 -3.69 -0.02 1.35 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.47 6.58 -51.93 -0.34 0.13 16 27 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 28 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.87 6.86 -51.93 -0.36 0.52 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.49 7.85 -51.93 -0.41 1.08 16 37 H 0.40 6.65 8.84 -34.47 -0.30 6.34 16 38 H 0.29 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.09 1.57 7.61 -51.93 -0.40 1.18 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 0.74 7.79 -51.93 -0.40 0.33 16 42 H 0.09 1.01 6.87 -51.93 -0.36 0.66 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -37.76 363.02 -10.25 -48.00 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.34 Total: 6.08 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: 0.25 Total: -28.09 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.36 Total: -56.23 kcal Atomic # 8 Polarization: -82.90 SS G_CDS: -3.92 Total: -86.82 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 97.69 SS G_CDS: -1.06 Total: 96.63 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.76 -10.25 -48.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.944 kcal (2) G-P(sol) polarization free energy of solvation -37.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds