Wall clock time and date at job start Sat Apr 11 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46895 * 109.46993 * 2 1 4 4 C 1.46902 * 109.47044 * 240.00081 * 2 1 3 5 5 C 1.46903 * 109.47076 * 120.00241 * 2 1 3 6 6 C 1.53000 * 109.47404 * 66.11678 * 5 2 1 7 7 H 1.08998 * 109.46958 * 180.68926 * 6 5 2 8 8 C 1.50702 * 109.47162 * 300.69164 * 6 5 2 9 9 H 1.08001 * 120.00249 * 92.31023 * 8 6 5 10 10 C 1.37885 * 119.99780 * 272.31406 * 8 6 5 11 11 N 1.31514 * 119.99798 * 173.83922 * 10 8 6 12 12 Si 1.86801 * 119.99743 * 353.83789 * 10 8 6 13 13 H 1.48499 * 109.47142 * 266.48328 * 12 10 8 14 14 H 1.48494 * 109.47367 * 26.48347 * 12 10 8 15 15 H 1.48508 * 109.46660 * 146.48288 * 12 10 8 16 16 O 1.42898 * 109.47114 * 60.68736 * 6 5 2 17 17 C 1.35445 * 116.99876 * 87.74275 * 16 6 5 18 18 N 1.32187 * 120.43742 * 4.45731 * 17 16 6 19 19 C 1.32805 * 121.14111 * 179.71093 * 18 17 16 20 20 S 1.76204 * 119.02702 * 180.26532 * 19 18 17 21 21 N 1.32022 * 121.94170 * 0.57528 * 19 18 17 22 22 C 1.33860 * 120.93016 * 359.71672 * 21 19 18 23 23 S 1.75761 * 131.21335 * 180.02562 * 22 21 19 24 24 C 1.75343 * 92.19609 * 179.97438 * 23 22 21 25 25 C 1.31798 * 111.42198 * 359.97438 * 24 23 22 26 26 C 1.39796 * 119.17221 * 0.02562 * 22 21 19 27 27 H 1.09000 * 109.46977 * 271.96359 * 1 2 3 28 28 H 1.08999 * 109.47043 * 31.96852 * 1 2 3 29 29 H 1.09003 * 109.47012 * 151.96865 * 1 2 3 30 30 H 1.09004 * 109.47142 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47260 * 299.99663 * 3 2 1 32 32 H 1.08998 * 109.47151 * 60.00186 * 3 2 1 33 33 H 1.09004 * 109.47232 * 312.00697 * 4 2 1 34 34 H 1.08997 * 109.47314 * 72.00882 * 4 2 1 35 35 H 1.08997 * 109.47258 * 192.01390 * 4 2 1 36 36 H 1.09004 * 109.46820 * 306.11515 * 5 2 1 37 37 H 1.09001 * 109.47178 * 186.12044 * 5 2 1 38 38 H 0.96996 * 119.99493 * 179.97438 * 11 10 8 39 39 H 1.40990 * 100.00211 * 270.29871 * 20 19 18 40 40 H 1.08000 * 124.28578 * 180.02562 * 24 23 22 41 41 H 1.07996 * 122.58902 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3849 0.0000 4 6 1.9587 -0.6925 -1.1995 5 6 1.9587 -0.6926 1.1994 6 6 1.5781 -2.1726 1.1249 7 1 1.9308 -2.6839 2.0206 8 6 0.0796 -2.3018 1.0298 9 1 -0.3976 -2.3532 0.0623 10 6 -0.6821 -2.3542 2.1780 11 7 -1.9947 -2.3447 2.0972 12 14 0.1505 -2.4389 3.8480 13 1 0.2883 -3.8587 4.2610 14 1 1.4956 -1.8155 3.7628 15 1 -0.6705 -1.7098 4.8479 16 8 2.1811 -2.7620 -0.0287 17 6 3.4334 -3.2569 0.1171 18 7 4.0160 -3.2659 1.3037 19 6 5.2411 -3.7530 1.4637 20 16 5.9616 -3.7438 3.0716 21 7 5.9373 -4.2384 0.4524 22 6 5.4273 -4.2634 -0.7850 23 16 6.1006 -4.8374 -2.3036 24 6 4.6507 -4.4024 -3.1886 25 6 3.7433 -3.8708 -2.3943 26 6 4.1388 -3.7661 -1.0011 27 1 -0.3633 0.0352 1.0271 28 1 -0.3633 0.8718 -0.5441 29 1 -0.3633 -0.9071 -0.4830 30 1 3.0487 1.3850 0.0005 31 1 1.5954 1.8988 -0.8900 32 1 1.5953 1.8988 0.8900 33 1 1.4314 -1.6397 -1.3129 34 1 1.7805 -0.0702 -2.0764 35 1 3.0274 -0.8815 -1.0991 36 1 1.5087 -0.2458 2.0860 37 1 3.0432 -0.5987 1.2559 38 1 -2.5305 -2.3820 2.9049 39 1 6.5882 -2.4809 3.0520 40 1 4.5179 -4.5520 -4.2499 41 1 2.7805 -3.5373 -2.7523 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229569150.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:14 Heat of formation + Delta-G solvation = 165.333621 kcal Electronic energy + Delta-G solvation = -26613.828032 eV Core-core repulsion = 23060.104558 eV Total energy + Delta-G solvation = -3553.723474 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.61937 -42.21324 -39.53523 -37.39458 -35.13969 -34.13865 -32.48794 -30.97548 -30.42141 -30.10103 -28.21442 -26.54115 -25.60005 -24.61357 -23.19379 -22.42657 -21.12643 -19.76127 -19.38238 -18.67203 -18.49427 -18.36798 -17.47939 -17.40079 -17.01687 -16.77921 -16.46971 -15.81000 -15.61384 -15.24532 -15.14097 -14.85564 -14.81669 -14.31629 -14.20323 -14.12272 -14.05444 -13.69120 -13.53289 -13.44088 -13.34753 -13.07177 -12.55199 -12.48335 -12.31732 -12.22937 -11.86058 -11.42937 -11.25678 -11.10791 -10.63872 -10.33158 -10.09393 -9.34867 -9.32023 -8.00151 -6.19462 -1.05853 -0.26112 -0.21241 0.15273 0.33601 0.60857 0.77267 1.32886 1.63294 1.78325 1.91862 2.04158 2.28979 2.31851 2.37544 2.43208 2.67761 2.88915 3.11614 3.18488 3.18939 3.24258 3.35201 3.49428 3.51427 3.59276 3.62227 3.69042 3.77445 3.92284 4.03033 4.10011 4.24542 4.26304 4.50825 4.65725 4.70840 4.80259 4.84500 5.28049 5.51667 5.86479 6.47187 6.56208 6.89892 7.48167 9.05547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.253 5.253 3 C -0.044 4.044 4 C -0.038 4.038 5 C -0.020 4.020 6 C 0.163 3.837 7 H 0.100 0.900 8 C -0.572 4.572 9 H 0.101 0.899 10 C 0.097 3.903 11 N -0.837 5.837 12 Si 0.858 3.142 13 H -0.258 1.258 14 H -0.259 1.259 15 H -0.271 1.271 16 O -0.283 6.283 17 C 0.408 3.592 18 N -0.546 5.546 19 C 0.352 3.648 20 S -0.028 6.028 21 N -0.466 5.466 22 C 0.095 3.905 23 S 0.194 5.806 24 C -0.201 4.201 25 C -0.090 4.090 26 C -0.182 4.182 27 H 0.125 0.875 28 H 0.084 0.916 29 H 0.146 0.854 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.145 0.855 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.098 0.902 38 H 0.288 0.712 39 H 0.112 0.888 40 H 0.183 0.817 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.893 11.174 -8.949 15.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 N 0.089 4.911 3 C -0.186 4.186 4 C -0.179 4.179 5 C -0.142 4.142 6 C 0.107 3.893 7 H 0.118 0.882 8 C -0.607 4.607 9 H 0.119 0.881 10 C -0.116 4.116 11 N -0.467 5.467 12 Si 0.682 3.318 13 H -0.182 1.182 14 H -0.183 1.183 15 H -0.195 1.195 16 O -0.186 6.186 17 C 0.210 3.790 18 N -0.281 5.281 19 C -0.030 4.030 20 S 0.125 5.875 21 N -0.189 5.189 22 C -0.157 4.157 23 S 0.454 5.546 24 C -0.335 4.335 25 C -0.120 4.120 26 C -0.197 4.197 27 H 0.144 0.856 28 H 0.103 0.897 29 H 0.164 0.836 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.163 0.837 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.147 0.853 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.200 0.800 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 8.507 10.323 -7.804 15.487 hybrid contribution -1.332 1.215 -0.075 1.805 sum 7.175 11.539 -7.878 15.706 Atomic orbital electron populations 1.24718 0.74117 1.07764 1.10075 1.45805 1.17083 1.13209 1.15050 1.24078 1.04385 0.81619 1.08481 1.24391 1.04379 1.02724 0.86452 1.24896 1.01650 1.00139 0.87474 1.20994 0.95204 0.85608 0.87468 0.88222 1.20705 0.84966 1.58528 0.96502 0.88123 1.24877 0.94810 0.92633 0.99286 1.69737 1.04309 1.40928 1.31695 0.87113 0.79713 0.81543 0.83453 1.18214 1.18334 1.19533 1.86626 1.22583 1.69392 1.39985 1.20300 0.85858 0.85515 0.87277 1.68628 1.12605 1.24036 1.22831 1.23873 0.88328 0.93691 0.97119 1.87377 1.66219 1.27353 1.06512 1.68809 1.35865 1.17376 0.96847 1.24107 0.94010 0.99264 0.98333 1.84638 1.15372 1.62383 0.92212 1.25378 0.97570 1.05825 1.04760 1.20630 1.01053 1.01133 0.89227 1.19957 0.95791 1.08936 0.95061 0.85628 0.89712 0.83569 0.87541 0.86644 0.86615 0.83733 0.87681 0.88530 0.85288 0.88388 0.90096 0.92423 0.80013 0.82503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 0.18 7.15 60.07 0.43 0.61 16 2 N -0.25 2.21 0.05 -395.62 -0.02 2.19 16 3 C -0.04 0.53 7.83 60.06 0.47 1.00 16 4 C -0.04 0.34 6.72 60.07 0.40 0.75 16 5 C -0.02 0.10 3.98 -3.82 -0.02 0.08 16 6 C 0.16 0.06 1.63 -27.88 -0.05 0.02 16 7 H 0.10 0.34 4.40 -51.93 -0.23 0.11 16 8 C -0.57 -2.07 5.69 -34.44 -0.20 -2.27 16 9 H 0.10 0.45 6.13 -52.49 -0.32 0.13 16 10 C 0.10 0.68 5.07 -17.82 -0.09 0.59 16 11 N -0.84 -8.26 13.96 55.43 0.77 -7.48 16 12 Si 0.86 5.45 26.57 -169.99 -4.52 0.94 16 13 H -0.26 -2.29 7.11 56.52 0.40 -1.89 16 14 H -0.26 -1.00 6.11 56.52 0.35 -0.65 16 15 H -0.27 -2.02 7.11 56.52 0.40 -1.62 16 16 O -0.28 0.13 5.67 -18.03 -0.10 0.03 16 17 C 0.41 0.41 7.05 -16.09 -0.11 0.30 16 18 N -0.55 -1.39 8.72 -13.10 -0.11 -1.50 16 19 C 0.35 1.07 7.91 -91.08 -0.72 0.35 16 20 S -0.03 -0.05 26.15 -107.50 -2.81 -2.86 16 21 N -0.47 -1.61 10.42 -12.18 -0.13 -1.74 16 22 C 0.10 0.17 7.69 -16.09 -0.12 0.05 16 23 S 0.19 -0.17 23.23 -107.50 -2.50 -2.67 16 24 C -0.20 0.62 11.02 28.84 0.32 0.94 16 25 C -0.09 0.22 10.33 -38.71 -0.40 -0.18 16 26 C -0.18 -0.07 6.08 -105.24 -0.64 -0.71 16 27 H 0.13 -0.51 6.48 -51.93 -0.34 -0.85 16 28 H 0.08 -0.80 7.65 -51.93 -0.40 -1.20 16 29 H 0.15 -0.60 4.55 -51.93 -0.24 -0.84 16 30 H 0.11 -1.34 8.10 -51.93 -0.42 -1.76 16 31 H 0.12 -1.57 7.90 -51.93 -0.41 -1.98 16 32 H 0.12 -1.43 8.14 -51.93 -0.42 -1.85 16 33 H 0.14 -0.95 5.10 -51.93 -0.26 -1.22 16 34 H 0.10 -1.23 7.95 -51.93 -0.41 -1.65 16 35 H 0.10 -0.82 7.23 -51.93 -0.38 -1.20 16 36 H 0.13 -0.64 6.88 -51.93 -0.36 -1.00 16 37 H 0.10 -0.58 8.07 -51.93 -0.42 -1.00 16 38 H 0.29 2.84 8.31 -40.82 -0.34 2.50 16 39 H 0.11 -0.13 9.55 96.90 0.93 0.79 16 40 H 0.18 -1.06 8.06 -52.49 -0.42 -1.48 16 41 H 0.16 -0.75 8.06 -52.49 -0.42 -1.17 16 LS Contribution 345.79 15.07 5.21 5.21 Total: 0.00 -15.55 345.79 -8.64 -24.19 By element: Atomic # 1 Polarization: -14.11 SS G_CDS: -3.71 Total: -17.83 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -0.72 Total: 1.52 kcal Atomic # 7 Polarization: -9.04 SS G_CDS: 0.51 Total: -8.52 kcal Atomic # 8 Polarization: 0.13 SS G_CDS: -0.10 Total: 0.03 kcal Atomic # 14 Polarization: 5.45 SS G_CDS: -4.52 Total: 0.94 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -5.31 Total: -5.53 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -15.55 -8.64 -24.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229569150.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.525 kcal (2) G-P(sol) polarization free energy of solvation -15.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds