Wall clock time and date at job start Sat Apr 11 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46895 * 109.46993 * 2 1 4 4 C 1.46902 * 109.47044 * 240.00081 * 2 1 3 5 5 C 1.46903 * 109.47076 * 120.00241 * 2 1 3 6 6 C 1.53000 * 109.47404 * 66.11678 * 5 2 1 7 7 H 1.08998 * 109.46958 * 180.68926 * 6 5 2 8 8 C 1.50702 * 109.47162 * 300.69164 * 6 5 2 9 9 H 1.08001 * 120.00249 * 92.31023 * 8 6 5 10 10 C 1.37885 * 119.99780 * 272.31406 * 8 6 5 11 11 N 1.31514 * 119.99798 * 173.83922 * 10 8 6 12 12 Si 1.86801 * 119.99743 * 353.83789 * 10 8 6 13 13 H 1.48499 * 109.47142 * 266.48328 * 12 10 8 14 14 H 1.48494 * 109.47367 * 26.48347 * 12 10 8 15 15 H 1.48508 * 109.46660 * 146.48288 * 12 10 8 16 16 O 1.42898 * 109.47114 * 60.68736 * 6 5 2 17 17 C 1.35445 * 116.99876 * 87.74275 * 16 6 5 18 18 N 1.32187 * 120.43742 * 4.45731 * 17 16 6 19 19 C 1.32805 * 121.14111 * 179.71093 * 18 17 16 20 20 S 1.76204 * 119.02702 * 180.26532 * 19 18 17 21 21 N 1.32022 * 121.94170 * 0.57528 * 19 18 17 22 22 C 1.33860 * 120.93016 * 359.71672 * 21 19 18 23 23 S 1.75761 * 131.21335 * 180.02562 * 22 21 19 24 24 C 1.75343 * 92.19609 * 179.97438 * 23 22 21 25 25 C 1.31798 * 111.42198 * 359.97438 * 24 23 22 26 26 C 1.39796 * 119.17221 * 0.02562 * 22 21 19 27 27 H 1.09000 * 109.46977 * 271.96359 * 1 2 3 28 28 H 1.08999 * 109.47043 * 31.96852 * 1 2 3 29 29 H 1.09003 * 109.47012 * 151.96865 * 1 2 3 30 30 H 1.09004 * 109.47142 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47260 * 299.99663 * 3 2 1 32 32 H 1.08998 * 109.47151 * 60.00186 * 3 2 1 33 33 H 1.09004 * 109.47232 * 312.00697 * 4 2 1 34 34 H 1.08997 * 109.47314 * 72.00882 * 4 2 1 35 35 H 1.08997 * 109.47258 * 192.01390 * 4 2 1 36 36 H 1.09004 * 109.46820 * 306.11515 * 5 2 1 37 37 H 1.09001 * 109.47178 * 186.12044 * 5 2 1 38 38 H 0.96996 * 119.99493 * 179.97438 * 11 10 8 39 39 H 1.40990 * 100.00211 * 270.29871 * 20 19 18 40 40 H 1.08000 * 124.28578 * 180.02562 * 24 23 22 41 41 H 1.07996 * 122.58902 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3849 0.0000 4 6 1.9587 -0.6925 -1.1995 5 6 1.9587 -0.6926 1.1994 6 6 1.5781 -2.1726 1.1249 7 1 1.9308 -2.6839 2.0206 8 6 0.0796 -2.3018 1.0298 9 1 -0.3976 -2.3532 0.0623 10 6 -0.6821 -2.3542 2.1780 11 7 -1.9947 -2.3447 2.0972 12 14 0.1505 -2.4389 3.8480 13 1 0.2883 -3.8587 4.2610 14 1 1.4956 -1.8155 3.7628 15 1 -0.6705 -1.7098 4.8479 16 8 2.1811 -2.7620 -0.0287 17 6 3.4334 -3.2569 0.1171 18 7 4.0160 -3.2659 1.3037 19 6 5.2411 -3.7530 1.4637 20 16 5.9616 -3.7438 3.0716 21 7 5.9373 -4.2384 0.4524 22 6 5.4273 -4.2634 -0.7850 23 16 6.1006 -4.8374 -2.3036 24 6 4.6507 -4.4024 -3.1886 25 6 3.7433 -3.8708 -2.3943 26 6 4.1388 -3.7661 -1.0011 27 1 -0.3633 0.0352 1.0271 28 1 -0.3633 0.8718 -0.5441 29 1 -0.3633 -0.9071 -0.4830 30 1 3.0487 1.3850 0.0005 31 1 1.5954 1.8988 -0.8900 32 1 1.5953 1.8988 0.8900 33 1 1.4314 -1.6397 -1.3129 34 1 1.7805 -0.0702 -2.0764 35 1 3.0274 -0.8815 -1.0991 36 1 1.5087 -0.2458 2.0860 37 1 3.0432 -0.5987 1.2559 38 1 -2.5305 -2.3820 2.9049 39 1 6.5882 -2.4809 3.0520 40 1 4.5179 -4.5520 -4.2499 41 1 2.7805 -3.5373 -2.7523 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229569150.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:14 Heat of formation + Delta-G solvation = 159.967608 kcal Electronic energy + Delta-G solvation = -26614.060720 eV Core-core repulsion = 23060.104558 eV Total energy + Delta-G solvation = -3553.956161 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.19625 -42.13904 -39.48624 -37.30689 -35.44531 -34.25303 -32.51194 -30.89961 -29.73750 -29.50848 -27.97863 -26.58667 -25.64452 -24.30623 -23.03427 -22.31592 -21.11315 -19.73969 -19.53650 -18.71090 -17.98305 -17.90993 -17.33195 -17.23759 -16.88592 -16.75007 -16.59557 -15.87283 -15.53510 -15.11279 -15.05242 -14.67117 -14.48409 -14.13057 -13.94651 -13.77715 -13.58829 -13.42186 -13.20340 -13.11793 -13.03990 -12.84111 -12.70243 -12.57162 -12.48138 -12.09577 -11.91859 -11.81649 -11.45724 -11.21129 -10.83411 -10.72197 -10.04248 -9.45496 -9.24804 -8.55558 -6.64949 -1.06147 -0.31822 -0.19448 0.12345 0.75955 0.90236 0.97940 1.19041 1.34060 1.37360 1.45456 1.63070 2.13215 2.30097 2.73472 2.82290 2.92009 3.05754 3.12914 3.22814 3.36535 3.62576 3.81111 3.87604 4.13002 4.18716 4.22443 4.31984 4.36318 4.48585 4.53946 4.64162 4.68117 4.71367 4.76468 4.85891 4.91808 5.02610 5.04387 5.30946 5.41775 5.65980 6.09786 6.45310 6.51748 7.00736 8.52459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.244 5.244 3 C -0.047 4.047 4 C -0.041 4.041 5 C -0.008 4.008 6 C 0.160 3.840 7 H 0.071 0.929 8 C -0.531 4.531 9 H 0.095 0.905 10 C 0.069 3.931 11 N -0.891 5.891 12 Si 0.878 3.122 13 H -0.299 1.299 14 H -0.217 1.217 15 H -0.290 1.290 16 O -0.270 6.270 17 C 0.403 3.597 18 N -0.559 5.559 19 C 0.339 3.661 20 S -0.055 6.055 21 N -0.487 5.487 22 C 0.065 3.935 23 S 0.193 5.807 24 C -0.181 4.181 25 C -0.096 4.096 26 C -0.177 4.177 27 H 0.097 0.903 28 H 0.124 0.876 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.142 0.858 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.144 0.856 35 H 0.097 0.903 36 H 0.132 0.868 37 H 0.118 0.882 38 H 0.275 0.725 39 H 0.140 0.860 40 H 0.216 0.784 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.465 13.345 -11.920 19.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 N 0.099 4.901 3 C -0.188 4.188 4 C -0.182 4.182 5 C -0.131 4.131 6 C 0.104 3.896 7 H 0.088 0.912 8 C -0.567 4.567 9 H 0.112 0.888 10 C -0.137 4.137 11 N -0.526 5.526 12 Si 0.704 3.296 13 H -0.226 1.226 14 H -0.139 1.139 15 H -0.216 1.216 16 O -0.172 6.172 17 C 0.205 3.795 18 N -0.294 5.294 19 C -0.044 4.044 20 S 0.098 5.902 21 N -0.210 5.210 22 C -0.187 4.187 23 S 0.453 5.547 24 C -0.315 4.315 25 C -0.125 4.125 26 C -0.194 4.194 27 H 0.116 0.884 28 H 0.142 0.858 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.160 0.840 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.162 0.838 35 H 0.116 0.884 36 H 0.150 0.850 37 H 0.136 0.864 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.233 0.767 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 10.139 12.520 -10.794 19.393 hybrid contribution -1.699 0.498 0.659 1.889 sum 8.441 13.018 -10.136 18.533 Atomic orbital electron populations 1.24434 0.75290 1.08170 1.08498 1.45633 1.15965 1.14924 1.13619 1.24336 1.05279 0.78969 1.10175 1.24431 1.03876 1.02514 0.87412 1.24421 1.03008 0.96100 0.89616 1.20828 0.93154 0.88912 0.86673 0.91158 1.20866 0.86729 1.53937 0.95209 0.88752 1.25139 0.94562 0.93615 1.00393 1.69828 1.05453 1.46447 1.30861 0.86844 0.81386 0.78828 0.82565 1.22645 1.13949 1.21629 1.86654 1.22284 1.69559 1.38752 1.20393 0.86066 0.85673 0.87341 1.68596 1.12593 1.24616 1.23634 1.23891 0.88667 0.94541 0.97276 1.87347 1.66705 1.29562 1.06614 1.68755 1.36631 1.17924 0.97723 1.24505 0.95138 1.00478 0.98566 1.84664 1.16784 1.61949 0.91304 1.25786 0.95763 1.03950 1.05970 1.20862 1.02347 1.01579 0.87699 1.20203 0.95133 1.07838 0.96184 0.88395 0.85789 0.86465 0.86248 0.83956 0.86096 0.86287 0.83825 0.88426 0.84978 0.86360 0.91507 0.89578 0.76681 0.79876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 0.33 7.15 127.69 0.91 1.25 16 2 N -0.24 4.76 0.05 ******* -0.07 4.69 16 3 C -0.05 1.30 7.83 127.69 1.00 2.30 16 4 C -0.04 0.85 6.72 127.69 0.86 1.70 16 5 C -0.01 0.09 3.98 86.30 0.34 0.43 16 6 C 0.16 0.17 1.63 29.85 0.05 0.22 16 7 H 0.07 0.54 4.40 -2.39 -0.01 0.53 16 8 C -0.53 -4.61 5.69 25.60 0.15 -4.46 16 9 H 0.09 0.98 6.13 -2.91 -0.02 0.96 16 10 C 0.07 1.15 5.07 84.66 0.43 1.58 16 11 N -0.89 -20.80 13.96 21.45 0.30 -20.50 16 12 Si 0.88 13.38 26.57 68.60 1.82 15.20 16 13 H -0.30 -6.56 7.11 99.48 0.71 -5.86 16 14 H -0.22 -1.70 6.11 99.48 0.61 -1.10 16 15 H -0.29 -5.25 7.11 99.48 0.71 -4.54 16 16 O -0.27 0.31 5.67 -87.41 -0.50 -0.18 16 17 C 0.40 0.77 7.05 85.49 0.60 1.37 16 18 N -0.56 -3.15 8.72 -308.39 -2.69 -5.84 16 19 C 0.34 2.37 7.91 180.51 1.43 3.80 16 20 S -0.06 -0.24 26.15 -56.49 -1.48 -1.71 16 21 N -0.49 -3.79 10.42 -192.45 -2.01 -5.79 16 22 C 0.06 0.23 7.69 84.76 0.65 0.88 16 23 S 0.19 -0.51 23.23 -56.49 -1.31 -1.83 16 24 C -0.18 1.59 11.02 67.06 0.74 2.32 16 25 C -0.10 0.68 10.33 23.30 0.24 0.92 16 26 C -0.18 -0.01 6.08 -20.26 -0.12 -0.13 16 27 H 0.10 -0.74 6.48 -2.39 -0.02 -0.75 16 28 H 0.12 -2.68 7.65 -2.39 -0.02 -2.70 16 29 H 0.12 -0.93 4.55 -2.39 -0.01 -0.94 16 30 H 0.12 -3.47 8.10 -2.38 -0.02 -3.49 16 31 H 0.14 -4.56 7.90 -2.39 -0.02 -4.58 16 32 H 0.12 -3.35 8.14 -2.39 -0.02 -3.37 16 33 H 0.12 -1.73 5.10 -2.38 -0.01 -1.74 16 34 H 0.14 -3.98 7.95 -2.39 -0.02 -4.00 16 35 H 0.10 -1.93 7.23 -2.39 -0.02 -1.94 16 36 H 0.13 -1.44 6.88 -2.39 -0.02 -1.46 16 37 H 0.12 -1.64 8.07 -2.39 -0.02 -1.66 16 38 H 0.27 6.65 8.31 -92.71 -0.77 5.88 16 39 H 0.14 -0.32 9.55 73.80 0.70 0.39 16 40 H 0.22 -3.37 8.06 -2.91 -0.02 -3.40 16 41 H 0.18 -2.31 8.06 -2.91 -0.02 -2.33 16 Total: 0.00 -42.91 345.79 3.04 -39.86 By element: Atomic # 1 Polarization: -37.79 SS G_CDS: 1.69 Total: -36.09 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 7.28 Total: 12.19 kcal Atomic # 7 Polarization: -22.98 SS G_CDS: -4.46 Total: -27.44 kcal Atomic # 8 Polarization: 0.31 SS G_CDS: -0.50 Total: -0.18 kcal Atomic # 14 Polarization: 13.38 SS G_CDS: 1.82 Total: 15.20 kcal Atomic # 16 Polarization: -0.75 SS G_CDS: -2.79 Total: -3.54 kcal Total: -42.91 3.04 -39.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229569150.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.832 kcal (2) G-P(sol) polarization free energy of solvation -42.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds