Wall clock time and date at job start Sat Apr 11 2020 05:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42096 * 109.47133 * 2 1 4 4 C 1.81397 * 102.99805 * 116.38770 * 2 1 3 5 5 C 1.53006 * 109.47103 * 179.97438 * 4 2 1 6 6 N 1.46497 * 109.47210 * 179.97438 * 5 4 2 7 7 C 1.34780 * 120.00371 * 180.02562 * 6 5 4 8 8 O 1.21359 * 119.99228 * 0.02562 * 7 6 5 9 9 C 1.49352 * 120.00074 * 179.97438 * 7 6 5 10 10 O 1.21370 * 120.00043 * 0.02562 * 9 7 6 11 11 N 1.34781 * 119.99669 * 180.02562 * 9 7 6 12 12 C 1.39720 * 119.99925 * 175.50119 * 11 9 7 13 13 C 1.39022 * 120.03765 * 214.86153 * 12 11 9 14 14 C 1.38142 * 120.05539 * 179.74052 * 13 12 11 15 15 C 1.38177 * 120.14662 * 0.55566 * 14 13 12 16 16 C 1.38911 * 120.08528 * 359.69722 * 15 14 13 17 17 O 1.35752 * 120.03454 * 180.02562 * 16 15 14 18 18 C 1.34823 * 116.99861 * 5.36347 * 17 16 15 19 19 H 1.07999 * 120.00541 * 354.97074 * 18 17 16 20 20 C 1.38651 * 119.99966 * 174.96395 * 18 17 16 21 21 N 1.31562 * 120.00077 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00145 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47003 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47393 * 120.00113 * 22 20 18 25 25 H 1.48497 * 109.46974 * 240.00000 * 22 20 18 26 26 C 1.38764 * 119.93555 * 0.02562 * 16 15 14 27 27 H 1.08998 * 109.47545 * 303.61650 * 1 2 3 28 28 H 1.09013 * 109.47227 * 63.61220 * 1 2 3 29 29 H 1.08994 * 109.47492 * 183.60984 * 1 2 3 30 30 H 1.09000 * 109.47303 * 299.99481 * 4 2 1 31 31 H 1.09003 * 109.47487 * 60.00222 * 4 2 1 32 32 H 1.08993 * 109.47200 * 300.00085 * 5 4 2 33 33 H 1.09009 * 109.47187 * 60.00204 * 5 4 2 34 34 H 0.97000 * 119.99918 * 0.02562 * 6 5 4 35 35 H 0.97003 * 119.99708 * 355.49535 * 11 9 7 36 36 H 1.08000 * 119.97058 * 359.97438 * 13 12 11 37 37 H 1.08012 * 119.92584 * 180.27287 * 14 13 12 38 38 H 1.08006 * 119.95450 * 179.71905 * 15 14 13 39 39 H 0.97004 * 119.99852 * 179.97438 * 21 20 18 40 40 H 1.08001 * 120.07072 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2219 -0.7855 1.5833 5 6 3.7422 -0.8628 1.7376 6 7 4.0717 -1.4966 3.0165 7 6 5.3606 -1.6717 3.3697 8 8 6.2481 -1.3038 2.6282 9 6 5.6965 -2.3174 4.6739 10 8 4.8088 -2.6849 5.4155 11 7 6.9854 -2.4920 5.0272 12 6 7.3008 -3.0094 6.2861 13 6 8.4352 -2.5662 6.9564 14 6 8.7444 -3.0736 8.2035 15 6 7.9343 -4.0309 8.7836 16 6 6.8021 -4.4819 8.1169 17 8 6.0066 -5.4221 8.6879 18 6 6.3079 -5.7954 9.9479 19 1 7.1962 -5.4113 10.4272 20 6 5.4772 -6.6725 10.6285 21 7 4.3953 -7.1407 10.0446 22 14 5.8942 -7.1892 12.3745 23 1 7.1534 -6.5266 12.7994 24 1 4.7925 -6.7882 13.2859 25 1 6.0679 -8.6631 12.4264 26 6 6.4851 -3.9704 6.8665 27 1 -0.3634 0.5689 0.8558 28 1 -0.3634 0.4568 -0.9207 29 1 -0.3634 -1.0255 0.0647 30 1 1.8031 -0.1970 2.3996 31 1 1.8030 -1.7916 1.6085 32 1 4.1608 -1.4515 0.9214 33 1 4.1616 0.1431 1.7123 34 1 3.3623 -1.7904 3.6093 35 1 7.6941 -2.2585 4.4073 36 1 9.0732 -1.8218 6.5034 37 1 9.6239 -2.7245 8.7244 38 1 8.1814 -4.4288 9.7568 39 1 3.8143 -7.7546 10.5206 40 1 5.6052 -4.3192 6.3464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252004635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:27 Heat of formation + Delta-G solvation = -93.509209 kcal Electronic energy + Delta-G solvation = -25588.372393 eV Core-core repulsion = 21496.608858 eV Total energy + Delta-G solvation = -4091.763535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.91207 -39.35460 -38.38292 -36.66324 -36.21865 -35.85229 -34.14327 -32.27980 -31.21420 -29.67845 -29.43955 -28.66685 -25.70020 -25.16124 -23.24767 -22.03172 -21.35132 -20.36092 -18.85256 -18.17861 -17.91127 -17.12827 -16.94576 -16.41065 -16.02707 -15.63432 -15.39922 -15.16248 -15.10956 -14.92246 -14.51941 -14.27113 -14.19039 -13.92782 -13.61977 -13.50405 -13.19447 -12.90950 -12.62427 -12.57989 -12.53298 -11.99596 -11.88277 -11.71653 -11.59232 -11.16226 -11.06821 -10.85127 -10.75968 -10.45538 -9.88559 -9.69504 -9.56789 -9.23985 -8.85413 -8.80368 -7.81450 -7.24773 -6.45618 -4.04680 0.89349 1.21680 2.03109 2.08813 2.29019 2.35885 3.11217 3.13187 3.18953 3.20090 3.24519 3.59508 3.96210 4.15855 4.36994 4.39087 4.54649 4.60672 4.72498 4.95098 5.08618 5.22006 5.26881 5.36213 5.41002 5.57954 5.78008 5.86744 6.01915 6.11651 6.29115 6.53278 6.64831 6.90831 6.96744 7.02583 7.30270 7.39095 7.43371 7.63185 7.71712 7.98857 8.04165 8.99492 9.69538 10.72219 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016631 B = 0.001980 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.192524 B =14141.272365 C =15638.226684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.491 4.491 2 S 1.264 4.736 3 O -0.846 6.846 4 C -0.473 4.473 5 C 0.139 3.861 6 N -0.699 5.699 7 C 0.513 3.487 8 O -0.519 6.519 9 C 0.499 3.501 10 O -0.490 6.490 11 N -0.636 5.636 12 C 0.167 3.833 13 C -0.229 4.229 14 C -0.058 4.058 15 C -0.241 4.241 16 C 0.165 3.835 17 O -0.173 6.173 18 C -0.391 4.391 19 H 0.094 0.906 20 C 0.039 3.961 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.185 4.185 27 H 0.081 0.919 28 H 0.108 0.892 29 H 0.115 0.885 30 H 0.096 0.904 31 H 0.129 0.871 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.416 0.584 35 H 0.418 0.582 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.129 0.871 39 H 0.270 0.730 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.793 9.343 -19.603 22.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 1.459 4.541 3 O -0.841 6.841 4 C -0.609 4.609 5 C 0.015 3.985 6 N -0.354 5.354 7 C 0.294 3.706 8 O -0.395 6.395 9 C 0.280 3.720 10 O -0.363 6.363 11 N -0.282 5.282 12 C 0.074 3.926 13 C -0.250 4.250 14 C -0.077 4.077 15 C -0.261 4.261 16 C 0.111 3.889 17 O -0.076 6.076 18 C -0.468 4.468 19 H 0.111 0.889 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.767 3.233 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.201 1.201 26 C -0.206 4.206 27 H 0.101 0.899 28 H 0.126 0.874 29 H 0.134 0.866 30 H 0.115 0.885 31 H 0.147 0.853 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.253 0.747 35 H 0.255 0.745 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.147 0.853 39 H 0.080 0.920 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.625 9.456 -20.345 22.726 hybrid contribution -0.772 0.899 2.713 2.961 sum -4.398 10.355 -17.632 20.916 Atomic orbital electron populations 1.27653 1.21340 1.08390 1.07524 1.70788 0.86622 0.98885 0.97758 1.93159 1.73504 1.36904 1.80535 1.28078 1.01259 1.11652 1.19908 1.20940 0.92119 0.99331 0.86091 1.45782 1.07529 1.60584 1.21549 1.20130 0.83550 0.80003 0.86962 1.90766 1.46812 1.49092 1.52787 1.20071 0.83944 0.80922 0.87100 1.90862 1.46585 1.47018 1.51811 1.42991 1.07466 1.61551 1.16213 1.17178 0.96150 0.94676 0.84593 1.20316 1.00392 1.06744 0.97522 1.20525 0.97941 0.95340 0.93851 1.21225 0.98047 1.03778 1.03013 1.19103 0.89795 0.88185 0.91848 1.83985 1.47927 1.46717 1.28929 1.21402 1.10051 1.27703 0.87609 0.88873 1.25315 0.95017 0.96293 0.99962 1.70063 1.12306 1.29722 1.37374 0.85629 0.78707 0.78639 0.80325 1.19059 1.20154 1.20144 1.20149 1.03450 1.00334 0.96645 0.89936 0.87374 0.86619 0.88541 0.85292 0.89494 0.90429 0.74679 0.74474 0.87036 0.86792 0.85287 0.92047 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -1.55 10.74 101.05 1.09 -0.47 16 2 S 1.26 5.06 13.80 -107.50 -1.48 3.58 16 3 O -0.85 -9.77 18.14 -35.23 -0.64 -10.41 16 4 C -0.47 -2.21 6.04 37.16 0.22 -1.99 16 5 C 0.14 1.08 5.68 -4.04 -0.02 1.06 16 6 N -0.70 -7.11 5.55 -60.76 -0.34 -7.44 16 7 C 0.51 6.73 7.89 -11.63 -0.09 6.64 16 8 O -0.52 -7.46 16.48 5.49 0.09 -7.37 16 9 C 0.50 7.81 7.73 -11.63 -0.09 7.72 16 10 O -0.49 -9.14 13.91 5.48 0.08 -9.07 16 11 N -0.64 -9.78 5.32 -10.31 -0.05 -9.83 16 12 C 0.17 3.11 6.29 -83.78 -0.53 2.58 16 13 C -0.23 -3.91 9.97 -39.33 -0.39 -4.30 16 14 C -0.06 -1.04 10.03 -39.64 -0.40 -1.43 16 15 C -0.24 -5.20 9.17 -39.35 -0.36 -5.56 16 16 C 0.17 4.08 6.64 -39.14 -0.26 3.82 16 17 O -0.17 -4.99 9.75 0.06 0.00 -4.99 16 18 C -0.39 -10.95 9.49 30.88 0.29 -10.66 16 19 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 20 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 21 N -0.86 -25.31 13.67 55.48 0.76 -24.55 16 22 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 26 C -0.18 -4.14 8.64 -39.19 -0.34 -4.48 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.11 0.31 8.14 -51.92 -0.42 -0.11 16 29 H 0.12 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.10 0.57 8.14 -51.92 -0.42 0.14 16 31 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.75 8.14 -51.92 -0.42 0.32 16 34 H 0.42 3.88 7.94 -40.82 -0.32 3.56 16 35 H 0.42 5.27 8.30 -40.82 -0.34 4.93 16 36 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 38 H 0.13 2.76 5.63 -52.48 -0.30 2.46 16 39 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.13 3.15 6.22 -52.49 -0.33 2.83 16 LS Contribution 365.99 15.07 5.52 5.52 Total: -1.00 -39.64 365.99 -6.57 -46.21 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -4.50 Total: 9.03 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -0.97 Total: -6.11 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.37 Total: -41.83 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.47 Total: -31.83 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 5.06 SS G_CDS: -1.48 Total: 3.58 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -39.64 -6.57 -46.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252004635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.299 kcal (2) G-P(sol) polarization free energy of solvation -39.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds