Wall clock time and date at job start Sat Apr 11 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46882 * 2 1 4 4 C 1.53004 * 109.46882 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47134 * 180.02562 * 4 3 2 6 6 C 1.36939 * 119.99883 * 84.99381 * 5 4 3 7 7 H 1.08001 * 120.00196 * 217.84316 * 6 5 4 8 8 C 1.38806 * 119.99897 * 37.85274 * 6 5 4 9 9 N 1.31617 * 120.00394 * 21.32516 * 8 6 5 10 10 Si 1.86802 * 120.00058 * 201.32526 * 8 6 5 11 11 H 1.48502 * 109.46939 * 89.99761 * 10 8 6 12 12 H 1.48495 * 109.47367 * 209.99532 * 10 8 6 13 13 H 1.48505 * 109.46995 * 330.00206 * 10 8 6 14 14 S 1.65599 * 120.00024 * 265.00304 * 5 4 3 15 15 O 1.42099 * 106.40052 * 208.81724 * 14 5 4 16 16 O 1.42104 * 106.39936 * 341.73495 * 14 5 4 17 17 C 1.76197 * 107.22153 * 95.27852 * 14 5 4 18 18 C 1.38650 * 119.76912 * 90.00137 * 17 14 5 19 19 C 1.37757 * 120.39721 * 180.02562 * 18 17 14 20 20 C 1.39544 * 119.73104 * 359.97438 * 19 18 17 21 21 N 1.36153 * 133.71009 * 179.97438 * 20 19 18 22 22 C 1.30614 * 108.72146 * 180.02562 * 21 20 19 23 23 O 1.35183 * 124.93330 * 179.97438 * 22 21 20 24 24 O 1.34381 * 110.13486 * 359.97438 * 22 21 20 25 25 C 1.35263 * 108.19133 * 0.02562 * 24 22 21 26 26 C 1.38002 * 119.76889 * 269.72757 * 17 14 5 27 27 H 1.09004 * 109.46664 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47246 * 299.99946 * 1 2 3 29 29 H 1.08994 * 109.46745 * 60.00092 * 1 2 3 30 30 H 1.08999 * 109.47143 * 239.99818 * 2 1 3 31 31 H 1.08999 * 109.47171 * 119.99862 * 2 1 3 32 32 H 1.08999 * 109.47381 * 59.99963 * 3 2 1 33 33 H 1.08999 * 109.47106 * 299.99902 * 3 2 1 34 34 H 1.08999 * 109.47171 * 299.99862 * 4 3 2 35 35 H 1.08999 * 109.47143 * 59.99818 * 4 3 2 36 36 H 0.97003 * 120.00489 * 180.02562 * 9 8 6 37 37 H 1.08000 * 119.80862 * 0.02562 * 18 17 14 38 38 H 1.07996 * 120.13887 * 180.02562 * 19 18 17 39 39 H 0.96696 * 114.00059 * 0.02562 * 23 22 21 40 40 H 1.08008 * 120.05241 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8238 0.0013 6 6 4.1885 3.5034 1.1829 7 1 3.9447 4.5544 1.2311 8 6 4.6340 2.8416 2.3188 9 7 5.3168 1.7223 2.2031 10 14 4.2645 3.5394 4.0117 11 1 2.9738 2.9924 4.5016 12 1 5.3507 3.1611 4.9510 13 1 4.1752 5.0194 3.9283 14 16 4.4527 3.5632 -1.4270 15 8 5.4609 4.5165 -1.1203 16 8 4.6293 2.5249 -2.3810 17 6 3.0414 4.4813 -1.9462 18 6 2.8904 5.7990 -1.5421 19 6 1.7918 6.5286 -1.9400 20 6 0.8261 5.9367 -2.7551 21 7 -0.3401 6.3762 -3.3033 22 6 -0.8708 5.4037 -3.9952 23 8 -2.0352 5.4846 -4.6771 24 8 -0.0911 4.3111 -3.9308 25 6 0.9831 4.6036 -3.1625 26 6 2.0967 3.8856 -2.7570 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9289 0.8909 35 1 3.9337 0.9286 -0.8891 36 1 5.6278 1.2595 2.9969 37 1 3.6386 6.2562 -0.9116 38 1 1.6786 7.5548 -1.6231 39 1 -2.4675 6.3474 -4.6162 40 1 2.2230 2.8600 -3.0712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259381314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:34 Heat of formation + Delta-G solvation = -67.514042 kcal Electronic energy + Delta-G solvation = -28216.881945 eV Core-core repulsion = 24126.245645 eV Total energy + Delta-G solvation = -4090.636300 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.43899 -38.77383 -37.74398 -36.47234 -36.10804 -34.79338 -34.67877 -33.84802 -31.36693 -30.76264 -29.50588 -28.16661 -24.69664 -24.15247 -23.32486 -22.35087 -22.16294 -20.45464 -19.44849 -18.95830 -18.24955 -17.69379 -17.40799 -16.94649 -16.29979 -15.97928 -15.02160 -14.84200 -14.72113 -14.42737 -14.10040 -14.02957 -14.01783 -13.49105 -13.31907 -12.86354 -12.68392 -12.39730 -12.24457 -11.76467 -11.58672 -11.49589 -11.35996 -11.26553 -11.09506 -10.99576 -10.91372 -10.83533 -10.60260 -10.43933 -10.33674 -10.31843 -10.05204 -9.72028 -9.07057 -8.85709 -8.54990 -7.75900 -6.32538 -4.04025 0.41320 1.15274 1.27132 1.48504 2.13892 3.18106 3.25959 3.27768 3.31800 3.43398 4.08872 4.24363 4.40729 4.53681 4.69204 4.90623 4.99406 5.15393 5.21000 5.40046 5.43918 5.45551 5.61395 5.67338 5.74066 5.92119 5.98980 6.07564 6.20288 6.20921 6.27130 6.33109 6.40864 6.44026 6.61412 6.69113 6.72821 6.89021 7.27900 7.36449 7.36918 7.72223 8.35567 8.94469 9.32578 10.69646 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011822 B = 0.004465 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.930716 B = 6269.181038 C = 6906.561979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.135 4.135 4 C 0.120 3.880 5 N -0.837 5.837 6 C -0.284 4.284 7 H 0.090 0.910 8 C 0.044 3.956 9 N -0.851 5.851 10 Si 0.915 3.085 11 H -0.278 1.278 12 H -0.284 1.284 13 H -0.268 1.268 14 S 2.626 3.374 15 O -0.964 6.964 16 O -0.993 6.993 17 C -0.633 4.633 18 C -0.015 4.015 19 C -0.094 4.094 20 C 0.086 3.914 21 N -0.529 5.529 22 C 0.455 3.545 23 O -0.414 6.414 24 O -0.199 6.199 25 C -0.022 4.022 26 C 0.023 3.977 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.043 0.957 34 H 0.113 0.887 35 H 0.062 0.938 36 H 0.269 0.731 37 H 0.156 0.844 38 H 0.143 0.857 39 H 0.441 0.559 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.069 3.995 -6.643 14.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.174 4.174 4 C -0.007 4.007 5 N -0.668 5.668 6 C -0.421 4.421 7 H 0.108 0.892 8 C -0.165 4.165 9 N -0.490 5.490 10 Si 0.742 3.258 11 H -0.204 1.204 12 H -0.209 1.209 13 H -0.192 1.192 14 S 2.721 3.279 15 O -0.954 6.954 16 O -0.983 6.983 17 C -0.714 4.714 18 C -0.035 4.035 19 C -0.114 4.114 20 C -0.026 4.026 21 N -0.280 5.280 22 C 0.206 3.794 23 O -0.216 6.216 24 O -0.093 6.093 25 C -0.071 4.071 26 C 0.003 3.997 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.130 0.870 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.174 0.826 38 H 0.160 0.840 39 H 0.301 0.699 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.462 3.823 -7.353 14.144 hybrid contribution -1.142 0.459 0.649 1.392 sum -12.604 4.282 -6.703 14.904 Atomic orbital electron populations 1.21766 0.96755 1.00720 1.01423 1.21462 0.94892 0.97787 1.01904 1.22071 0.98343 0.95492 1.01541 1.21391 0.90894 0.83762 1.04643 1.52540 1.76522 1.20599 1.17134 1.19080 1.42154 0.95931 0.84913 0.89203 1.25402 0.94245 0.96812 1.00029 1.69978 1.31283 1.17544 1.30223 0.86121 0.78113 0.79650 0.81960 1.20351 1.20925 1.19205 1.05406 0.73648 0.73908 0.74915 1.93453 1.53345 1.64515 1.84054 1.93417 1.85013 1.55606 1.64249 1.31692 1.21742 1.08569 1.09414 1.20875 0.96106 0.91595 0.94903 1.20318 0.92239 1.00870 0.97948 1.19595 0.92827 0.91562 0.98623 1.71224 1.11209 1.27548 1.18036 1.22316 0.86694 0.80693 0.89681 1.84662 1.28052 1.42664 1.66198 1.84375 1.29500 1.35905 1.59514 1.20041 0.90351 0.96977 0.99771 1.19568 0.87378 0.99673 0.93067 0.93393 0.92981 0.93282 0.92298 0.91879 0.91322 0.93813 0.86994 0.92002 0.92096 0.82633 0.83964 0.69945 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.12 -1.87 5.93 -26.73 -0.16 -2.03 16 3 C -0.13 -2.44 5.51 -26.73 -0.15 -2.58 16 4 C 0.12 2.57 5.27 -4.04 -0.02 2.55 16 5 N -0.84 -19.29 2.81 -59.91 -0.17 -19.45 16 6 C -0.28 -6.89 8.91 -15.06 -0.13 -7.02 16 7 H 0.09 2.08 7.92 -52.49 -0.42 1.66 16 8 C 0.04 1.07 5.00 -17.43 -0.09 0.98 16 9 N -0.85 -21.78 11.42 55.49 0.63 -21.15 16 10 Si 0.92 19.08 29.60 -169.99 -5.03 14.05 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 12 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 13 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 14 S 2.63 57.99 5.64 -107.50 -0.61 57.38 16 15 O -0.96 -23.71 16.56 -57.17 -0.95 -24.65 16 16 O -0.99 -23.06 15.72 -57.17 -0.90 -23.96 16 17 C -0.63 -11.66 5.98 -39.52 -0.24 -11.90 16 18 C -0.01 -0.24 9.49 -39.61 -0.38 -0.62 16 19 C -0.09 -1.39 10.10 -39.27 -0.40 -1.79 16 20 C 0.09 1.35 7.23 -84.69 -0.61 0.74 16 21 N -0.53 -7.38 11.37 -12.80 -0.15 -7.53 16 22 C 0.46 5.75 9.54 52.24 0.50 6.25 16 23 O -0.41 -3.38 13.62 -40.53 -0.55 -3.93 16 24 O -0.20 -3.01 10.78 -20.51 -0.22 -3.23 16 25 C -0.02 -0.37 7.42 -38.69 -0.29 -0.65 16 26 C 0.02 0.39 8.73 -39.55 -0.35 0.05 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.04 0.75 7.33 -51.93 -0.38 0.37 16 34 H 0.11 2.60 5.51 -51.93 -0.29 2.32 16 35 H 0.06 1.31 6.88 -51.93 -0.36 0.95 16 36 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 37 H 0.16 2.42 7.59 -52.49 -0.40 2.02 16 38 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.44 1.08 9.06 45.56 0.41 1.49 16 40 H 0.15 2.44 7.59 -52.48 -0.40 2.04 16 LS Contribution 354.98 15.07 5.35 5.35 Total: -1.00 -31.53 354.98 -8.44 -39.97 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -3.92 Total: 4.79 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -1.94 Total: -17.64 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.32 Total: -48.13 kcal Atomic # 8 Polarization: -53.15 SS G_CDS: -2.62 Total: -55.77 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Atomic # 16 Polarization: 57.99 SS G_CDS: -0.61 Total: 57.38 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.53 -8.44 -39.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259381314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.540 kcal (2) G-P(sol) polarization free energy of solvation -31.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds