Wall clock time and date at job start Sat Apr 11 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46882 * 2 1 4 4 C 1.53004 * 109.46882 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47134 * 180.02562 * 4 3 2 6 6 C 1.36939 * 119.99883 * 84.99381 * 5 4 3 7 7 H 1.08001 * 120.00196 * 217.84316 * 6 5 4 8 8 C 1.38806 * 119.99897 * 37.85274 * 6 5 4 9 9 N 1.31617 * 120.00394 * 21.32516 * 8 6 5 10 10 Si 1.86802 * 120.00058 * 201.32526 * 8 6 5 11 11 H 1.48502 * 109.46939 * 89.99761 * 10 8 6 12 12 H 1.48495 * 109.47367 * 209.99532 * 10 8 6 13 13 H 1.48505 * 109.46995 * 330.00206 * 10 8 6 14 14 S 1.65599 * 120.00024 * 265.00304 * 5 4 3 15 15 O 1.42099 * 106.40052 * 208.81724 * 14 5 4 16 16 O 1.42104 * 106.39936 * 341.73495 * 14 5 4 17 17 C 1.76197 * 107.22153 * 95.27852 * 14 5 4 18 18 C 1.38650 * 119.76912 * 90.00137 * 17 14 5 19 19 C 1.37757 * 120.39721 * 180.02562 * 18 17 14 20 20 C 1.39544 * 119.73104 * 359.97438 * 19 18 17 21 21 N 1.36153 * 133.71009 * 179.97438 * 20 19 18 22 22 C 1.30614 * 108.72146 * 180.02562 * 21 20 19 23 23 O 1.35183 * 124.93330 * 179.97438 * 22 21 20 24 24 O 1.34381 * 110.13486 * 359.97438 * 22 21 20 25 25 C 1.35263 * 108.19133 * 0.02562 * 24 22 21 26 26 C 1.38002 * 119.76889 * 269.72757 * 17 14 5 27 27 H 1.09004 * 109.46664 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47246 * 299.99946 * 1 2 3 29 29 H 1.08994 * 109.46745 * 60.00092 * 1 2 3 30 30 H 1.08999 * 109.47143 * 239.99818 * 2 1 3 31 31 H 1.08999 * 109.47171 * 119.99862 * 2 1 3 32 32 H 1.08999 * 109.47381 * 59.99963 * 3 2 1 33 33 H 1.08999 * 109.47106 * 299.99902 * 3 2 1 34 34 H 1.08999 * 109.47171 * 299.99862 * 4 3 2 35 35 H 1.08999 * 109.47143 * 59.99818 * 4 3 2 36 36 H 0.97003 * 120.00489 * 180.02562 * 9 8 6 37 37 H 1.08000 * 119.80862 * 0.02562 * 18 17 14 38 38 H 1.07996 * 120.13887 * 180.02562 * 19 18 17 39 39 H 0.96696 * 114.00059 * 0.02562 * 23 22 21 40 40 H 1.08008 * 120.05241 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8238 0.0013 6 6 4.1885 3.5034 1.1829 7 1 3.9447 4.5544 1.2311 8 6 4.6340 2.8416 2.3188 9 7 5.3168 1.7223 2.2031 10 14 4.2645 3.5394 4.0117 11 1 2.9738 2.9924 4.5016 12 1 5.3507 3.1611 4.9510 13 1 4.1752 5.0194 3.9283 14 16 4.4527 3.5632 -1.4270 15 8 5.4609 4.5165 -1.1203 16 8 4.6293 2.5249 -2.3810 17 6 3.0414 4.4813 -1.9462 18 6 2.8904 5.7990 -1.5421 19 6 1.7918 6.5286 -1.9400 20 6 0.8261 5.9367 -2.7551 21 7 -0.3401 6.3762 -3.3033 22 6 -0.8708 5.4037 -3.9952 23 8 -2.0352 5.4846 -4.6771 24 8 -0.0911 4.3111 -3.9308 25 6 0.9831 4.6036 -3.1625 26 6 2.0967 3.8856 -2.7570 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9289 0.8909 35 1 3.9337 0.9286 -0.8891 36 1 5.6278 1.2595 2.9969 37 1 3.6386 6.2562 -0.9116 38 1 1.6786 7.5548 -1.6231 39 1 -2.4675 6.3474 -4.6162 40 1 2.2230 2.8600 -3.0712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259381314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:33 Heat of formation + Delta-G solvation = -92.922396 kcal Electronic energy + Delta-G solvation = -28217.983734 eV Core-core repulsion = 24126.245645 eV Total energy + Delta-G solvation = -4091.738089 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -44.57583 -39.72885 -38.83755 -38.17847 -37.89672 -36.59466 -35.85918 -35.29901 -33.14310 -32.01327 -30.73626 -29.64695 -26.43686 -25.26576 -24.58830 -23.83942 -23.33599 -21.83921 -20.71766 -20.17677 -19.75335 -18.97534 -18.61530 -18.48983 -18.06749 -17.36717 -16.65802 -16.26343 -16.01830 -15.82857 -15.55180 -15.17139 -15.06582 -14.92378 -14.76238 -14.09890 -14.00636 -13.81152 -13.71070 -13.14510 -13.08038 -12.99756 -12.99726 -12.87660 -12.78299 -12.60601 -12.50224 -12.17656 -12.08234 -11.89111 -11.80536 -11.73184 -11.58322 -11.27985 -10.84269 -10.10329 -9.76034 -9.54107 -8.15541 -5.92871 -0.83102 -0.31220 -0.09319 0.39805 1.00686 1.53264 1.55344 1.64798 2.13748 2.21247 2.41215 2.70154 2.92471 3.11063 3.19955 3.37968 3.71440 3.83220 3.91731 4.13825 4.18311 4.22739 4.38114 4.45398 4.51789 4.56109 4.71924 4.87551 4.89084 4.92119 4.94467 5.01071 5.06993 5.26177 5.26767 5.37271 5.45395 5.56452 5.67972 5.78644 5.96038 6.41628 6.52364 7.11845 7.48250 8.87090 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011822 B = 0.004465 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.930716 B = 6269.181038 C = 6906.561979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.125 4.125 4 C 0.117 3.883 5 N -0.849 5.849 6 C -0.303 4.303 7 H 0.096 0.904 8 C 0.002 3.998 9 N -0.888 5.888 10 Si 0.973 3.027 11 H -0.271 1.271 12 H -0.287 1.287 13 H -0.259 1.259 14 S 2.638 3.362 15 O -0.997 6.997 16 O -1.013 7.013 17 C -0.644 4.644 18 C -0.022 4.022 19 C -0.084 4.084 20 C 0.087 3.913 21 N -0.534 5.534 22 C 0.474 3.526 23 O -0.397 6.397 24 O -0.209 6.209 25 C -0.034 4.034 26 C 0.020 3.980 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.269 0.731 37 H 0.161 0.839 38 H 0.176 0.824 39 H 0.465 0.535 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.013 5.371 -7.182 17.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.165 4.165 4 C -0.009 4.009 5 N -0.680 5.680 6 C -0.438 4.438 7 H 0.114 0.886 8 C -0.203 4.203 9 N -0.528 5.528 10 Si 0.797 3.203 11 H -0.196 1.196 12 H -0.213 1.213 13 H -0.183 1.183 14 S 2.738 3.262 15 O -0.987 6.987 16 O -1.003 7.003 17 C -0.731 4.731 18 C -0.042 4.042 19 C -0.104 4.104 20 C -0.025 4.025 21 N -0.286 5.286 22 C 0.226 3.774 23 O -0.202 6.202 24 O -0.104 6.104 25 C -0.083 4.083 26 C 0.000 4.000 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.178 0.822 38 H 0.193 0.807 39 H 0.331 0.669 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.409 5.193 -7.873 17.222 hybrid contribution -0.421 0.103 0.586 0.729 sum -14.830 5.297 -7.287 17.352 Atomic orbital electron populations 1.21721 0.94692 1.02129 1.01615 1.21463 0.96665 0.95745 1.02076 1.21959 0.95752 0.97468 1.01325 1.21400 0.93158 0.83091 1.03285 1.52621 1.77054 1.21080 1.17225 1.19364 1.42444 0.96337 0.85688 0.88638 1.26158 0.93965 0.97110 1.03106 1.70083 1.32718 1.18998 1.30978 0.85230 0.77808 0.79396 0.77834 1.19641 1.21340 1.18292 1.04305 0.74192 0.73422 0.74234 1.93408 1.55772 1.65013 1.84510 1.93384 1.85965 1.56663 1.64311 1.30913 1.21055 1.09259 1.11853 1.21005 0.97068 0.90967 0.95172 1.20573 0.90945 1.02004 0.96871 1.19908 0.93342 0.91266 0.98009 1.71285 1.10713 1.27646 1.18936 1.22596 0.86960 0.79500 0.88371 1.84729 1.25984 1.44872 1.64633 1.84358 1.29532 1.37000 1.59495 1.19916 0.90618 0.97326 1.00437 1.19511 0.87672 0.99898 0.92878 0.91405 0.92968 0.92898 0.91708 0.92223 0.92293 0.93119 0.88969 0.92633 0.92130 0.82169 0.80696 0.66941 0.82945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.91 71.98 0.71 -2.84 16 2 C -0.12 -3.65 5.93 30.60 0.18 -3.47 16 3 C -0.13 -4.57 5.51 30.60 0.17 -4.40 16 4 C 0.12 5.20 5.27 86.38 0.46 5.66 16 5 N -0.85 -40.31 2.81 -343.45 -0.97 -41.28 16 6 C -0.30 -15.01 8.91 84.03 0.75 -14.26 16 7 H 0.10 4.49 7.92 -2.91 -0.02 4.46 16 8 C 0.00 0.09 5.00 84.86 0.42 0.51 16 9 N -0.89 -46.97 11.42 21.65 0.25 -46.72 16 10 Si 0.97 39.39 29.60 68.60 2.03 41.42 16 11 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 12 H -0.29 -11.71 7.11 99.48 0.71 -11.00 16 13 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 14 S 2.64 119.90 5.64 -56.49 -0.32 119.58 16 15 O -1.00 -50.55 16.56 -128.00 -2.12 -52.67 16 16 O -1.01 -48.57 15.72 -128.00 -2.01 -50.58 16 17 C -0.64 -23.72 5.98 22.31 0.13 -23.59 16 18 C -0.02 -0.70 9.49 22.25 0.21 -0.49 16 19 C -0.08 -2.29 10.10 22.47 0.23 -2.07 16 20 C 0.09 2.52 7.23 39.28 0.28 2.80 16 21 N -0.53 -13.11 11.37 -422.75 -4.81 -17.92 16 22 C 0.47 10.38 9.54 130.42 1.24 11.62 16 23 O -0.40 -4.83 13.62 -62.36 -0.85 -5.68 16 24 O -0.21 -5.82 10.78 9.28 0.10 -5.72 16 25 C -0.03 -1.04 7.42 22.85 0.17 -0.87 16 26 C 0.02 0.69 8.73 22.29 0.19 0.88 16 27 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.05 1.75 7.33 -2.39 -0.02 1.73 16 34 H 0.09 4.49 5.51 -2.39 -0.01 4.48 16 35 H 0.06 2.46 6.88 -2.39 -0.02 2.44 16 36 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 37 H 0.16 4.92 7.59 -2.91 -0.02 4.90 16 38 H 0.18 3.55 8.06 -2.91 -0.02 3.52 16 39 H 0.46 0.15 9.06 -74.06 -0.67 -0.52 16 40 H 0.15 4.96 7.59 -2.91 -0.02 4.94 16 Total: -1.00 -68.81 354.98 -3.12 -71.92 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.42 Total: 18.18 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 5.16 Total: -30.52 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -5.53 Total: -105.92 kcal Atomic # 8 Polarization: -109.77 SS G_CDS: -4.88 Total: -114.65 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Atomic # 16 Polarization: 119.90 SS G_CDS: -0.32 Total: 119.58 kcal Total: -68.81 -3.12 -71.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259381314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.001 kcal (2) G-P(sol) polarization free energy of solvation -68.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds