Wall clock time and date at job start Sat Apr 11 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 N 1.46505 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.46498 * 119.99594 * 85.00153 * 4 3 2 6 6 C 1.50695 * 109.47417 * 85.00087 * 5 4 3 7 7 H 1.08000 * 119.99673 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00350 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00248 * 179.97438 * 8 6 5 10 10 Si 1.86806 * 119.99768 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.46770 * 90.00319 * 10 8 6 12 12 H 1.48499 * 109.46946 * 209.99820 * 10 8 6 13 13 H 1.48492 * 109.47183 * 330.00017 * 10 8 6 14 14 S 1.65591 * 119.99950 * 265.00044 * 4 3 2 15 15 O 1.42104 * 106.40084 * 203.54145 * 14 4 3 16 16 O 1.42103 * 106.40538 * 336.45791 * 14 4 3 17 17 C 1.76204 * 107.21896 * 90.00181 * 14 4 3 18 18 C 1.38653 * 119.76621 * 269.72637 * 17 14 4 19 19 C 1.37757 * 120.39357 * 179.71891 * 18 17 14 20 20 C 1.39542 * 119.73030 * 0.55177 * 19 18 17 21 21 N 1.36160 * 133.70589 * 179.74609 * 20 19 18 22 22 C 1.30615 * 108.71487 * 179.97438 * 21 20 19 23 23 O 1.35189 * 124.93071 * 180.02562 * 22 21 20 24 24 O 1.34387 * 110.13883 * 0.02562 * 22 21 20 25 25 C 1.35262 * 108.19140 * 359.97438 * 24 22 21 26 26 C 1.37999 * 119.76759 * 90.00035 * 17 14 4 27 27 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 28 28 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 30 30 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 31 31 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 33 33 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 34 34 H 1.08999 * 109.46835 * 205.00119 * 5 4 3 35 35 H 1.09001 * 109.47298 * 324.99692 * 5 4 3 36 36 H 0.97007 * 119.99872 * 180.02562 * 9 8 6 37 37 H 1.07997 * 119.80500 * 359.97438 * 18 17 14 38 38 H 1.07998 * 120.13468 * 180.29126 * 19 18 17 39 39 H 0.96702 * 113.99769 * 359.97438 * 23 22 21 40 40 H 1.07998 * 120.05737 * 359.97271 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2380 1.3316 -1.2630 6 6 4.3822 2.6982 -1.8816 7 1 3.9689 3.5627 -1.3834 8 6 5.0419 2.8448 -3.0833 9 7 5.1673 4.0374 -3.6234 10 14 5.7574 1.3495 -3.9445 11 1 4.7398 0.7702 -4.8577 12 1 6.9523 1.7541 -4.7279 13 1 6.1490 0.3357 -2.9326 14 16 4.3324 1.5675 1.4296 15 8 5.6155 2.0857 1.1062 16 8 3.4504 2.1949 2.3504 17 6 4.5929 -0.0697 2.0266 18 6 3.6549 -0.6546 2.8634 19 6 3.8427 -1.9360 3.3331 20 6 4.9899 -2.6439 2.9727 21 7 5.4579 -3.8887 3.2649 22 6 6.6023 -4.0592 2.6587 23 8 7.3534 -5.1812 2.7244 24 8 6.9246 -2.9572 1.9603 25 6 5.9394 -2.0461 2.1306 26 6 5.7319 -0.7586 1.6625 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 5.2261 0.9121 -1.0742 35 1 3.6909 0.6802 -1.9445 36 1 5.6311 4.1404 -4.4692 37 1 2.7697 -0.1040 3.1455 38 1 3.1070 -2.3893 3.9809 39 1 6.9709 -5.8790 3.2739 40 1 6.4602 -0.2951 1.0135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259381763.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:38 Heat of formation + Delta-G solvation = -62.618225 kcal Electronic energy + Delta-G solvation = -27965.297113 eV Core-core repulsion = 23874.873112 eV Total energy + Delta-G solvation = -4090.424001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -43.66714 -38.98224 -38.01444 -36.90001 -36.54944 -35.36833 -34.95542 -33.18250 -31.94228 -31.04890 -29.81556 -28.04539 -25.19569 -24.40987 -23.58976 -22.43864 -22.22512 -21.11329 -19.66748 -19.15495 -18.15070 -17.76709 -17.61280 -17.02184 -16.88045 -16.38877 -15.61857 -15.09588 -14.73276 -14.46531 -14.28826 -14.26731 -14.21256 -13.84165 -13.46023 -13.11247 -12.97902 -12.57630 -12.38559 -12.08455 -12.03380 -11.76214 -11.62075 -11.59594 -11.58072 -11.35526 -11.13021 -11.11208 -10.81338 -10.73691 -10.55689 -10.28928 -10.17427 -9.57785 -9.13870 -8.84265 -8.62128 -8.20560 -6.10727 -4.10356 0.11623 0.76175 0.86682 1.18881 1.90120 3.06849 3.10861 3.23817 3.31584 3.32515 3.54485 4.00264 4.17227 4.27850 4.35697 4.59388 4.81546 4.89452 5.02840 5.12772 5.20732 5.22699 5.30216 5.41160 5.45331 5.60795 5.65668 5.78542 5.82952 5.93432 6.01110 6.06968 6.16234 6.21020 6.45574 6.48661 6.51031 6.67655 7.01001 7.15612 7.28168 7.53533 8.45462 8.94437 9.48026 11.02638 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010854 B = 0.004447 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.125118 B = 6295.515459 C = 7403.591535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.150 4.150 3 C 0.118 3.882 4 N -0.972 5.972 5 C 0.225 3.775 6 C -0.532 4.532 7 H 0.081 0.919 8 C 0.076 3.924 9 N -0.893 5.893 10 Si 0.868 3.132 11 H -0.274 1.274 12 H -0.282 1.282 13 H -0.264 1.264 14 S 2.688 3.312 15 O -0.934 6.934 16 O -0.962 6.962 17 C -0.661 4.661 18 C -0.019 4.019 19 C -0.093 4.093 20 C 0.094 3.906 21 N -0.531 5.531 22 C 0.463 3.537 23 O -0.411 6.411 24 O -0.196 6.196 25 C -0.022 4.022 26 C 0.033 3.967 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.034 0.966 35 H 0.033 0.967 36 H 0.265 0.735 37 H 0.155 0.845 38 H 0.145 0.855 39 H 0.442 0.558 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.821 -17.220 12.836 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.189 4.189 3 C -0.008 4.008 4 N -0.811 5.811 5 C 0.102 3.898 6 C -0.571 4.571 7 H 0.099 0.901 8 C -0.127 4.127 9 N -0.531 5.531 10 Si 0.695 3.305 11 H -0.200 1.200 12 H -0.208 1.208 13 H -0.189 1.189 14 S 2.773 3.227 15 O -0.924 6.924 16 O -0.952 6.952 17 C -0.743 4.743 18 C -0.039 4.039 19 C -0.113 4.113 20 C -0.018 4.018 21 N -0.282 5.282 22 C 0.215 3.785 23 O -0.213 6.213 24 O -0.090 6.090 25 C -0.071 4.071 26 C 0.013 3.987 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.173 0.827 38 H 0.163 0.837 39 H 0.302 0.698 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.204 -16.632 13.041 21.376 hybrid contribution 0.739 -1.738 -0.750 2.032 sum -2.466 -18.370 12.291 22.239 Atomic orbital electron populations 1.21687 0.95382 1.01404 1.02168 1.22069 0.96102 0.98354 1.02364 1.21388 0.78956 0.95896 1.04583 1.57205 1.14222 1.88232 1.21405 1.19519 0.90943 0.98685 0.80702 1.21339 1.36910 0.92863 1.05957 0.90141 1.24834 0.95324 0.95666 0.96907 1.69886 1.42455 1.21934 1.18821 0.86976 0.79472 0.83708 0.80330 1.20007 1.20805 1.18904 1.02379 0.73983 0.73425 0.72888 1.93627 1.40013 1.75532 1.83212 1.93524 1.66289 1.72390 1.63038 1.31641 1.01904 1.27846 1.12904 1.20797 0.97417 0.93597 0.92081 1.20298 0.95434 0.93704 1.01850 1.19660 0.96324 0.89597 0.96198 1.71278 1.09515 1.18581 1.28827 1.22369 0.85680 0.83917 0.86555 1.84694 1.44877 1.21096 1.70598 1.84415 1.43257 1.21383 1.59909 1.20013 0.88955 0.93006 1.05133 1.19664 0.95783 0.87887 0.95349 0.92306 0.92976 0.92543 0.91296 0.92494 0.89778 0.88864 0.94811 0.94945 0.92468 0.82747 0.83714 0.69753 0.82504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.15 0.37 -1.18 16 2 C -0.15 -1.90 6.26 -26.74 -0.17 -2.07 16 3 C 0.12 1.85 5.68 -4.04 -0.02 1.82 16 4 N -0.97 -18.38 2.77 -115.66 -0.32 -18.70 16 5 C 0.22 4.99 4.17 -5.20 -0.02 4.97 16 6 C -0.53 -14.52 9.94 -34.44 -0.34 -14.86 16 7 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 8 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.89 -26.82 13.96 55.43 0.77 -26.04 16 10 Si 0.87 20.57 27.47 -169.99 -4.67 15.90 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 14 S 2.69 49.59 5.64 -107.50 -0.61 48.98 16 15 O -0.93 -20.68 16.23 -57.17 -0.93 -21.60 16 16 O -0.96 -18.06 15.80 -57.17 -0.90 -18.96 16 17 C -0.66 -9.94 5.98 -39.52 -0.24 -10.18 16 18 C -0.02 -0.23 8.41 -39.60 -0.33 -0.57 16 19 C -0.09 -1.08 10.10 -39.27 -0.40 -1.48 16 20 C 0.09 1.26 7.23 -84.69 -0.61 0.65 16 21 N -0.53 -6.38 11.38 -12.79 -0.15 -6.53 16 22 C 0.46 5.17 9.54 52.25 0.50 5.67 16 23 O -0.41 -2.87 13.62 -40.55 -0.55 -3.42 16 24 O -0.20 -2.71 10.78 -20.52 -0.22 -2.93 16 25 C -0.02 -0.32 7.42 -38.69 -0.29 -0.60 16 26 C 0.03 0.50 9.52 -39.55 -0.38 0.12 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.66 7.02 -51.93 -0.36 0.30 16 32 H 0.08 1.23 6.91 -51.93 -0.36 0.87 16 33 H 0.09 1.53 8.11 -51.93 -0.42 1.11 16 34 H 0.03 0.75 6.66 -51.93 -0.35 0.41 16 35 H 0.03 0.68 7.54 -51.93 -0.39 0.28 16 36 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.15 1.60 7.59 -52.49 -0.40 1.21 16 38 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.44 0.52 9.06 45.56 0.41 0.93 16 40 H 0.16 2.35 7.60 -52.49 -0.40 1.95 16 LS Contribution 355.50 15.07 5.36 5.36 Total: -1.00 -35.29 355.50 -8.21 -43.50 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -3.97 Total: 0.10 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -2.03 Total: -15.66 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.31 Total: -51.27 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -2.61 Total: -46.91 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Atomic # 16 Polarization: 49.59 SS G_CDS: -0.61 Total: 48.98 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.29 -8.21 -43.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259381763.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.118 kcal (2) G-P(sol) polarization free energy of solvation -35.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds